3VDKA

Crystal structure of circumsporozoite protein atsr domain, r32 platinum-bound form
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
71
structure length
71
Chain Sequence
YVEFEPSDKHIKEYLNKIQNSLSTEWSPCSVTCGNGIQVRIKPGSANKPKDELDYANDIEKKICKMEKCPH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Unexpected fold in the circumsporozoite protein target of malaria vaccines.
pubmed doi rcsb
molecule tags Cell invasion
source organism Plasmodium falciparum
molecule keywords Circumsporozoite (CS) protein
total genus 13
structure length 71
sequence length 71
ec nomenclature
pdb deposition date 2012-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00090 TSP_1 Thrombospondin type 1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.100.10 Mainly Beta Single Sheet TSP-1 type 1 repeat Thrombospondin type-1 (TSP1) repeat 3vdkA00
4HQOA 4HQLA 1SZLA 4A5WB 1VEXA 3R6BA 3VDLA 3VDKA 1LSLA 3T5OA 4HQNA 3VDJA
chains in the Genus database with same CATH superfamily
4HQOA 4HQLA 1SZLA 4A5WB 1VEXA 3R6BA 3VDLA 3VDKA 1LSLA 3T5OA 4HQNA 3VDJA
chains in the Genus database with same CATH topology
4HQOA 4HQLA 1SZLA 4A5WB 1VEXA 3R6BA 3VDLA 3VDKA 1LSLA 3T5OA 4HQNA 3VDJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HQO A;  4HQL A;  1SZL A;  4A5W B;  1VEX A;  3R6B A;  3VDL A;  3VDK A;  1LSL A;  3T5O A;  4HQN A;  3VDJ A; 
#chains in the Genus database with same CATH topology
 4HQO A;  4HQL A;  1SZL A;  4A5W B;  1VEX A;  3R6B A;  3VDL A;  3VDK A;  1LSL A;  3T5O A;  4HQN A;  3VDJ A; 
#chains in the Genus database with same CATH homology
 4HQO A;  4HQL A;  1SZL A;  4A5W B;  1VEX A;  3R6B A;  3VDL A;  3VDK A;  1LSL A;  3T5O A;  4HQN A;  3VDJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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