3VDKA

Crystal structure of circumsporozoite protein atsr domain, r32 platinum-bound form
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
71
structure length
71
Chain Sequence
YVEFEPSDKHIKEYLNKIQNSLSTEWSPCSVTCGNGIQVRIKPGSANKPKDELDYANDIEKKICKMEKCPH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell invasion
molecule keywords Circumsporozoite (CS) protein
publication title Unexpected fold in the circumsporozoite protein target of malaria vaccines.
pubmed doi rcsb
source organism Plasmodium falciparum
total genus 13
structure length 71
sequence length 71
ec nomenclature
pdb deposition date 2012-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00090 TSP_1 Thrombospondin type 1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.100.10 Mainly Beta Single Sheet TSP-1 type 1 repeat Thrombospondin type-1 (TSP1) repeat 3vdkA00
1SZLA 4HQOA 4HQNA 4A5WB 1LSLA 3R6BA 3T5OA 3VDLA 1VEXA 3VDKA 3VDJA 4HQLA
chains in the Genus database with same CATH superfamily
1SZLA 4HQOA 4HQNA 4A5WB 1LSLA 3R6BA 3T5OA 3VDLA 1VEXA 3VDKA 3VDJA 4HQLA
chains in the Genus database with same CATH topology
1SZLA 4HQOA 4HQNA 4A5WB 1LSLA 3R6BA 3T5OA 3VDLA 1VEXA 3VDKA 3VDJA 4HQLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SZL A;  4HQO A;  4HQN A;  4A5W B;  1LSL A;  3R6B A;  3T5O A;  3VDL A;  1VEX A;  3VDK A;  3VDJ A;  4HQL A; 
#chains in the Genus database with same CATH topology
 1SZL A;  4HQO A;  4HQN A;  4A5W B;  1LSL A;  3R6B A;  3T5O A;  3VDL A;  1VEX A;  3VDK A;  3VDJ A;  4HQL A; 
#chains in the Genus database with same CATH homology
 1SZL A;  4HQO A;  4HQN A;  4A5W B;  1LSL A;  3R6B A;  3T5O A;  3VDL A;  1VEX A;  3VDK A;  3VDJ A;  4HQL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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