3VEJA

Crystal structure of the get5 carboxyl domain from s. cerevisiae
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
40
structure length
40
Chain Sequence
VDLTVPWDDIEALLKNNFENDQAAVRQVMERLQKGWSLAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
molecule keywords Ubiquitin-like protein MDY2
publication title Get5 Carboxyl-terminal Domain Is a Novel Dimerization Motif That Tethers an Extended Get4/Get5 Complex.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 13
structure length 40
sequence length 40
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-01-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.70 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 3vejA00
3VEJA 2LO0A 2LNZA
chains in the Genus database with same CATH superfamily
4DRAE 2PN0A 1FBXA 2LNZA 4R8QA 4JA3A 1IS7A 2WSEK 4E45B 1TFEA 4NE6B 3LW5K 3B0BC 2WSFK 1EFUB 1AIPC 4DRBJ 4Q7JA 2LO0A 1N3SA 1GTPA 1WM9A 2O01G 1N3RA 5DMZA 4E44B 4NE5B 4QPMA 2WSCG 1FB1A 3VEJA 2KR1A 1WPLA 1N3TA 2P11A 1A9CA 1WURA 2WSEG 4DU6A 1A8RA 4NE3B 3BMBA 3LW5G 2WSCK 2WSFG 1EL6A 1IS8A 1WUQA
chains in the Genus database with same CATH topology
4DRAE 2PN0A 1FBXA 2LNZA 4R8QA 4JA3A 1IS7A 4E45B 1TFEA 4NE6B 3B0BC 1EFUB 1AIPC 4DRBJ 4Q7JA 2LO0A 1N3SA 1GTPA 1WM9A 1N3RA 5DMZA 4E44B 4NE5B 4QPMA 3VEJA 1FB1A 2KR1A 1WPLA 1N3TA 2P11A 1A9CA 1WURA 4DU6A 1A8RA 4NE3B 3BMBA 1EL6A 1IS8A 1WUQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VEJ A;  2LO0 A;  2LNZ A; 
#chains in the Genus database with same CATH topology
 4DRA E;  2PN0 A;  1FBX A;  2LNZ A;  4R8Q A;  4JA3 A;  1IS7 A;  2WSE K;  4E45 B;  1TFE A;  4NE6 B;  3LW5 K;  3B0B C;  2WSF K;  1EFU B;  1AIP C;  4DRB J;  4Q7J A;  2LO0 A;  1N3S A;  1GTP A;  1WM9 A;  2O01 G;  1N3R A;  5DMZ A;  4E44 B;  4NE5 B;  4QPM A;  2WSC G;  1FB1 A;  3VEJ A;  2KR1 A;  1WPL A;  1N3T A;  2P11 A;  1A9C A;  1WUR A;  2WSE G;  4DU6 A;  1A8R A;  4NE3 B;  3BMB A;  3LW5 G;  2WSC K;  2WSF G;  1EL6 A;  1IS8 A;  1WUQ A; 
#chains in the Genus database with same CATH homology
 4DRA E;  2PN0 A;  1FBX A;  2LNZ A;  4R8Q A;  4JA3 A;  1IS7 A;  4E45 B;  1TFE A;  4NE6 B;  3B0B C;  1EFU B;  1AIP C;  4DRB J;  4Q7J A;  2LO0 A;  1N3S A;  1GTP A;  1WM9 A;  1N3R A;  5DMZ A;  4E44 B;  4NE5 B;  4QPM A;  3VEJ A;  1FB1 A;  2KR1 A;  1WPL A;  1N3T A;  2P11 A;  1A9C A;  1WUR A;  4DU6 A;  1A8R A;  4NE3 B;  3BMB A;  1EL6 A;  1IS8 A;  1WUQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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