3VJ7A

Crystal structure of the carboxy-terminal ribonuclease domain of colicin e5 r33q mutant
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
94
structure length
94
Chain Sequence
PGLKIDQKIRGQMPEQGWTEDDIKNTVSNGATGTSFDKRSPKKTPPDYLGRNDPATVYGSPGKYVVVNDRTGEVTQISDKTDPGWVDDSRIQWG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Colicin-E5
publication title Identification of the catalytic residues of sequence-specific and histidine-free ribonuclease colicin E5
pubmed doi rcsb
source organism Escherichia coli
total genus 25
structure length 94
sequence length 94
ec nomenclature ec 3.1.-.-:
pdb deposition date 2011-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12106 Colicin_E5 Colicin E5 ribonuclease domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2310.30 Alpha Beta 2-Layer Sandwich YaeB-like fold YaeB-like fold 3vj7A00
3VJ7A 2A8KA 3AO9A 2DFXE 2DJHA 2FHZB
chains in the Genus database with same CATH superfamily
1WMIA 4LTTA 4MMJA 3HI2B 2PD0A 2A6SA 4FXHA 4ML2A 2A8KA 4FXED 3G5OB 3AO9A 4FBDA 5IWHA 4NRNA 2KHEA 4YY3Y 4PX8A 4LS4A 2OTRA 4MCTB 5CZEB 2A6QE 4ML0B 4Q2UB 5CZFC 4MMGA 5CEGB 2KC8A 3KXEA 2FHZB 1XQBA 3OEIC 2A6RA 5CW7B 5IXLA 3VJ7A 4LSYA 2KC9A 4MCXB 2DFXE 2DJHA 4FXIA 3BPQB 1Z8MA
chains in the Genus database with same CATH topology
3VJ7A 2A8KA 3AO9A 2DFXE 4FBDA 3HI2B 2DJHA 2PD0A 2FHZB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VJ7 A;  2A8K A;  3AO9 A;  2DFX E;  2DJH A;  2FHZ B; 
#chains in the Genus database with same CATH topology
 1WMI A;  4LTT A;  4MMJ A;  3HI2 B;  2PD0 A;  2A6S A;  4FXH A;  4ML2 A;  2A8K A;  4FXE D;  3G5O B;  3AO9 A;  4FBD A;  5IWH A;  4NRN A;  2KHE A;  4YY3 Y;  4PX8 A;  4LS4 A;  2OTR A;  4MCT B;  5CZE B;  2A6Q E;  4ML0 B;  4Q2U B;  5CZF C;  4MMG A;  5CEG B;  2KC8 A;  3KXE A;  2FHZ B;  1XQB A;  3OEI C;  2A6R A;  5CW7 B;  5IXL A;  3VJ7 A;  4LSY A;  2KC9 A;  4MCX B;  2DFX E;  2DJH A;  4FXI A;  3BPQ B;  1Z8M A; 
#chains in the Genus database with same CATH homology
 3VJ7 A;  2A8K A;  3AO9 A;  2DFX E;  4FBD A;  3HI2 B;  2DJH A;  2PD0 A;  2FHZ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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