3VKSA

Assimilatory nitrite reductase (nii3) - no complex from tobbaco leaf
Total Genus 192
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
538
structure length
538
Chain Sequence
b'VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Nitrite reductase
publication title The reductive reaction mechanism of tobacco nitrite reductase derived from a combination of crystal structures and ultraviolet-visible microspectroscopy
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
total genus 192
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vksA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vksA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vksA01
2XSJA 3MM8B 3MM5B 4S23A 3MMBA 5AOPA 3B0NA 3VKRA 3VKTA 3MMCA 2Y0FA 3OR1B 4G39A 4G38A 3B0HA 4G9PA 3B0JA 4S3FA 3MM6B 3MM7B 8GEPA 4S3EA 3MM9B 3MMAA 3OR2B 1ZJ8A 3MM5A 3MM8A 2V4JA 4S38A 3OR1A 3VM0A 1ZJ9A 3AOPA 3MM6A 4S3DA 2AKJA 3MM9A 5GEPA 3MM7A 3OR2A 4S3AA 3B0GA 3GEOA 4S3BA 4S3CA 3VKQA 1AOPA 4AOPA 3VLYA 2GEPA 2XSJB 3NOYA 4GEPA 3VLXA 3VM1A 4HTRA 3VKPA 3VLZA 3MMBB 6GEPA 2AOPA 3MMCB 3B0MA 3VKSA 3B0LA 7GEPA 3MMAB 2V4JB 4S39A
chains in the Genus database with same CATH superfamily
2XSJA 3MM8B 3MM5B 4S23A 3MMBA 5AOPA 3B0NA 3VKRA 3VKTA 3MMCA 2Y0FA 3OR1B 4G39A 4G38A 3B0HA 4G9PA 3B0JA 4S3FA 3MM6B 3MM7B 8GEPA 4S3EA 3MM9B 3MMAA 3OR2B 1ZJ8A 3MM5A 3MM8A 2V4JA 4S38A 3OR1A 3VM0A 1ZJ9A 3AOPA 3MM6A 4S3DA 2AKJA 3MM9A 5GEPA 3MM7A 3OR2A 4S3AA 3B0GA 3GEOA 4S3BA 4S3CA 3VKQA 1AOPA 4AOPA 3VLYA 2GEPA 2XSJB 3NOYA 4GEPA 3VLXA 3VM1A 4HTRA 3VKPA 3VLZA 3MMBB 6GEPA 2AOPA 3MMCB 3B0MA 3VKSA 3B0LA 7GEPA 3MMAB 2V4JB 4S39A
chains in the Genus database with same CATH topology
2XSJA 3MM8B 3MM5B 4S23A 3MMBA 5AOPA 3B0NA 3VKRA 3VKTA 3MMCA 2Y0FA 3OR1B 4G39A 4G38A 3B0HA 4G9PA 3B0JA 4S3FA 3MM6B 3MM7B 8GEPA 4S3EA 3MM9B 3MMAA 3OR2B 1ZJ8A 3MM5A 3MM8A 2V4JA 4S38A 3OR1A 3VM0A 1ZJ9A 3AOPA 3MM6A 4S3DA 2AKJA 3MM9A 5GEPA 3MM7A 3OR2A 4S3AA 3B0GA 3GEOA 4S3BA 4S3CA 3VKQA 1AOPA 4AOPA 3VLYA 2GEPA 2XSJB 3NOYA 4GEPA 3VLXA 3VM1A 4HTRA 3VKPA 3VLZA 3MMBB 6GEPA 2AOPA 3MMCB 3B0MA 3VKSA 3B0LA 7GEPA 3MMAB 2V4JB 4S39A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XSJ A;  3MM8 B;  3MM5 B;  4S23 A;  3MMB A;  5AOP A;  3B0N A;  3VKR A;  3VKT A;  3MMC A;  2Y0F A;  3OR1 B;  4G39 A;  4G38 A;  3B0H A;  4G9P A;  3B0J A;  4S3F A;  3MM6 B;  3MM7 B;  8GEP A;  4S3E A;  3MM9 B;  3MMA A;  3OR2 B;  1ZJ8 A;  3MM5 A;  3MM8 A;  2V4J A;  4S38 A;  3OR1 A;  3VM0 A;  1ZJ9 A;  3AOP A;  3MM6 A;  4S3D A;  2AKJ A;  3MM9 A;  5GEP A;  3MM7 A;  3OR2 A;  4S3A A;  3B0G A;  3GEO A;  4S3B A;  4S3C A;  3VKQ A;  1AOP A;  4AOP A;  3VLY A;  2GEP A;  2XSJ B;  3NOY A;  4GEP A;  3VLX A;  3VM1 A;  4HTR A;  3VKP A;  3VLZ A;  3MMB B;  6GEP A;  2AOP A;  3MMC B;  3B0M A;  3VKS A;  3B0L A;  7GEP A;  3MMA B;  2V4J B;  4S39 A; 
#chains in the Genus database with same CATH topology
 2XSJ A;  3MM8 B;  3MM5 B;  4S23 A;  3MMB A;  5AOP A;  3B0N A;  3VKR A;  3VKT A;  3MMC A;  2Y0F A;  3OR1 B;  4G39 A;  4G38 A;  3B0H A;  4G9P A;  3B0J A;  4S3F A;  3MM6 B;  3MM7 B;  8GEP A;  4S3E A;  3MM9 B;  3MMA A;  3OR2 B;  1ZJ8 A;  3MM5 A;  3MM8 A;  2V4J A;  4S38 A;  3OR1 A;  3VM0 A;  1ZJ9 A;  3AOP A;  3MM6 A;  4S3D A;  2AKJ A;  3MM9 A;  5GEP A;  3MM7 A;  3OR2 A;  4S3A A;  3B0G A;  3GEO A;  4S3B A;  4S3C A;  3VKQ A;  1AOP A;  4AOP A;  3VLY A;  2GEP A;  2XSJ B;  3NOY A;  4GEP A;  3VLX A;  3VM1 A;  4HTR A;  3VKP A;  3VLZ A;  3MMB B;  6GEP A;  2AOP A;  3MMC B;  3B0M A;  3VKS A;  3B0L A;  7GEP A;  3MMA B;  2V4J B;  4S39 A; 
#chains in the Genus database with same CATH homology
 2XSJ A;  3MM8 B;  3MM5 B;  4S23 A;  3MMB A;  5AOP A;  3B0N A;  3VKR A;  3VKT A;  3MMC A;  2Y0F A;  3OR1 B;  4G39 A;  4G38 A;  3B0H A;  4G9P A;  3B0J A;  4S3F A;  3MM6 B;  3MM7 B;  8GEP A;  4S3E A;  3MM9 B;  3MMA A;  3OR2 B;  1ZJ8 A;  3MM5 A;  3MM8 A;  2V4J A;  4S38 A;  3OR1 A;  3VM0 A;  1ZJ9 A;  3AOP A;  3MM6 A;  4S3D A;  2AKJ A;  3MM9 A;  5GEP A;  3MM7 A;  3OR2 A;  4S3A A;  3B0G A;  3GEO A;  4S3B A;  4S3C A;  3VKQ A;  1AOP A;  4AOP A;  3VLY A;  2GEP A;  2XSJ B;  3NOY A;  4GEP A;  3VLX A;  3VM1 A;  4HTR A;  3VKP A;  3VLZ A;  3MMB B;  6GEP A;  2AOP A;  3MMC B;  3B0M A;  3VKS A;  3B0L A;  7GEP A;  3MMA B;  2V4J B;  4S39 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...