3VL4A

3-isopropylmalate dehydrogenase from shewanella oneidensis mr-1 at 410 mpa
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
364
structure length
364
Chain Sequence
SSYQIAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGCEAADAILFGSVGGPKWEKLPPNEQPERGALLPLRGHFELFCNLRPAKLHDGLEHMSPLRSDISARGFDVLCVRELTGGIYFGKPKGRQGEGESEEAFDTMRYSRREISRIARIAFEAARGRRKKVTSVDKANVLACSVLWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIAMLTGSMGLLSSASMNSTGFGLFEPAGGSAPDIAGKGIANPIAQILSAALMLRHSLKQEEAASAIERAVTKALNSGYLTGELLSSDQRHKAKTTVQMGDFIADAVKAGV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords 3-isopropylmalate dehydrogenase
publication title High-pressure-induced water penetration into 3-isopropylmalate dehydrogenase
pubmed doi rcsb
source organism Shewanella oneidensis
total genus 130
structure length 364
sequence length 364
ec nomenclature ec 1.1.1.85: 3-isopropylmalate dehydrogenase.
pdb deposition date 2011-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 3vl4A00
3MARA 3MASA 2AYQA 5GRFA 3BLXA 3UDOA 2Y42A 1IDFA 5GRIA 3ASJA 3VL2A 4JA8A 5GRLA 1ZORA 5ICDA 4XS3A 1PTMA 3VL3A 1V5BA 1CW4A 1X0LA 1GROA 1YCOA 5J33A 1XGVA 1CNZA 4L04A 2E5MA 5DE1A 1XACA 3TY4A 3MAPA 3BLVB 3TY3A 5L57A 1DR8A 4AOYA 1T0LA 4AOUA 1PS6A 3WZYA 5J34A 1IDMA 4UMYA 3FLKA 1TYOA 3DMSA 4ICDA 2D1CA 4AJ3A 2Y40A 4HCXA 1A05A 1DR0A 1IPDA 5I96A 3VL7A 1GC9A 5GRHB 3INMA 4L06A 3ICDA 1V94A 4AJBA 5GREB 3BLXB 5L58A 1GC8A 2IV0A 2DHTA 4AOVA 1XAAA 4I3KA 1HJ6A 3LCBC 4XRXA 4P69C 1VI1A 1T09A 3U1HA 1IDEA 2QFWA 4I3LA 5LGEA 1LWDA 4YB4A 2HI1A 2QFXA 4AJAA 4L03A 1WALA 5HN4A 1OSJA 4KZOA 3UDUA 3VMJA 1OSIA 3MASB 1DPZA 1XKDA 5GRFB 1HEXA 3FMXX 1AI2A 5GRIB 3WZWA 4AJCA 1PB3A 1XADA 5GRLB 4Y1PA 3VMLA 2E0CA 4JQPA 1WPWA 4UMXA 8ICDA 2QFYA 5HN6A 1CM7A 1P8FA 1HQSA 5K10A 1AI3A 1YXOA 1V53A 3U9EA 3VL6A 2UXQA 2Y3ZA 2Y41A 1GRPA 6ICDA 5GRHA 3WZVA 2D4VA 1CW1A 3AH3A 1VLCA 4IWHA 2QFVA 3VMKA 5GREA 5HN3A 4F7IA 1BL5A 3TSNA 4ATYA 4BNPA 3VL4A 7ICDA 9ICDA 5K11A 3VKZA 1SJSA 1PS7A 3BLVA 4WUOA 2ZTWA 4XXVA 4AJRA 1PB1A 1W0DA 3UF6A 1ISOA 1IDDA 3TNGA 1IDCA 1G2UA 3R8WA 1U7NA 5I95A 2G4OA 1XABA 5HN5A 3LXYA 1CW7A 3WZXA 3US8A 5J32A 1IKAA 4AJSA 1R8KA 2UXRA
chains in the Genus database with same CATH superfamily
3MARA 3MASA 2AYQA 5GRFA 3BLXA 3UDOA 2Y42A 1IDFA 5GRIA 3ASJA 3VL2A 4JA8A 5GRLA 1ZORA 5ICDA 4XS3A 1PTMA 3VL3A 1V5BA 1CW4A 1X0LA 1GROA 1YCOA 5J33A 1XGVA 1CNZA 4L04A 2E5MA 5DE1A 1XACA 3TY4A 3MAPA 3BLVB 3TY3A 5L57A 1DR8A 4AOYA 1T0LA 4AOUA 1PS6A 3WZYA 5J34A 1IDMA 4UMYA 3FLKA 1TYOA 3DMSA 4ICDA 2D1CA 4AJ3A 2Y40A 4HCXA 1A05A 1DR0A 1IPDA 5I96A 3VL7A 1GC9A 5GRHB 3INMA 4L06A 3ICDA 1V94A 4AJBA 5GREB 3BLXB 5L58A 1GC8A 2IV0A 2DHTA 4AOVA 1XAAA 4I3KA 1HJ6A 3LCBC 4XRXA 4P69C 1VI1A 1T09A 3U1HA 1IDEA 2QFWA 4I3LA 5LGEA 1LWDA 4YB4A 2HI1A 2QFXA 4AJAA 4L03A 1WALA 5HN4A 1OSJA 4KZOA 3UDUA 3VMJA 1OSIA 3MASB 1DPZA 1XKDA 5GRFB 1HEXA 3FMXX 1AI2A 5GRIB 3WZWA 4AJCA 1PB3A 1XADA 5GRLB 4Y1PA 3VMLA 2E0CA 4JQPA 1WPWA 4UMXA 8ICDA 2QFYA 5HN6A 1CM7A 1P8FA 1HQSA 5K10A 1AI3A 1YXOA 1V53A 3U9EA 3VL6A 2UXQA 2Y3ZA 2Y41A 1GRPA 6ICDA 5GRHA 3WZVA 2D4VA 1CW1A 3AH3A 1VLCA 4IWHA 2QFVA 3VMKA 5GREA 5HN3A 4F7IA 1BL5A 3TSNA 4ATYA 4BNPA 3VL4A 7ICDA 9ICDA 5K11A 3VKZA 1SJSA 1PS7A 3BLVA 4WUOA 2ZTWA 4XXVA 4AJRA 1PB1A 1W0DA 3UF6A 1ISOA 1IDDA 3TNGA 1IDCA 1G2UA 3R8WA 1U7NA 5I95A 2G4OA 1XABA 5HN5A 3LXYA 1CW7A 3WZXA 3US8A 5J32A 1IKAA 4AJSA 1R8KA 2UXRA
chains in the Genus database with same CATH topology
3MARA 3MASA 2AYQA 5GRFA 3BLXA 3UDOA 2Y42A 1IDFA 5GRIA 3ASJA 3VL2A 4JA8A 5GRLA 1ZORA 5ICDA 4XS3A 1PTMA 3VL3A 1V5BA 1CW4A 1X0LA 1GROA 1YCOA 5J33A 1XGVA 1CNZA 4L04A 2E5MA 5DE1A 1XACA 3TY4A 3MAPA 3BLVB 3TY3A 5L57A 1DR8A 4AOYA 1T0LA 4AOUA 1PS6A 3WZYA 5J34A 1IDMA 4UMYA 3FLKA 1TYOA 3DMSA 4ICDA 2D1CA 4AJ3A 2Y40A 4HCXA 1A05A 1DR0A 1IPDA 5I96A 3VL7A 1GC9A 5GRHB 3INMA 4L06A 3ICDA 1V94A 4AJBA 5GREB 3BLXB 5L58A 1GC8A 2IV0A 2DHTA 4AOVA 1XAAA 4I3KA 1HJ6A 3LCBC 4XRXA 4P69C 1VI1A 1T09A 3U1HA 1IDEA 2QFWA 4I3LA 5LGEA 1LWDA 4YB4A 2HI1A 2QFXA 4AJAA 4L03A 1WALA 5HN4A 1OSJA 4KZOA 3UDUA 3VMJA 1OSIA 3MASB 1DPZA 1XKDA 5GRFB 1HEXA 3FMXX 1AI2A 5GRIB 3WZWA 4AJCA 1PB3A 1XADA 5GRLB 4Y1PA 3VMLA 2E0CA 4JQPA 1WPWA 4UMXA 8ICDA 2QFYA 5HN6A 1CM7A 1P8FA 1HQSA 5K10A 1AI3A 1YXOA 1V53A 3U9EA 3VL6A 2UXQA 2Y3ZA 2Y41A 1GRPA 6ICDA 5GRHA 3WZVA 2D4VA 1CW1A 3AH3A 1VLCA 4IWHA 2QFVA 3VMKA 5GREA 5HN3A 4F7IA 1BL5A 3TSNA 4ATYA 4BNPA 3VL4A 7ICDA 9ICDA 5K11A 3VKZA 1SJSA 1PS7A 3BLVA 4WUOA 2ZTWA 4XXVA 4AJRA 1PB1A 1W0DA 3UF6A 1ISOA 1IDDA 3TNGA 1IDCA 1G2UA 3R8WA 1U7NA 5I95A 2G4OA 1XABA 5HN5A 3LXYA 1CW7A 3WZXA 3US8A 5J32A 1IKAA 4AJSA 1R8KA 2UXRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MAR A;  3MAS A;  2AYQ A;  5GRF A;  3BLX A;  3UDO A;  2Y42 A;  1IDF A;  5GRI A;  3ASJ A;  3VL2 A;  4JA8 A;  5GRL A;  1ZOR A;  5ICD A;  4XS3 A;  1PTM A;  3VL3 A;  1V5B A;  1CW4 A;  1X0L A;  1GRO A;  1YCO A;  5J33 A;  1XGV A;  1CNZ A;  4L04 A;  2E5M A;  5DE1 A;  1XAC A;  3TY4 A;  3MAP A;  3BLV B;  3TY3 A;  5L57 A;  1DR8 A;  4AOY A;  1T0L A;  4AOU A;  1PS6 A;  3WZY A;  5J34 A;  1IDM A;  4UMY A;  3FLK A;  1TYO A;  3DMS A;  4ICD A;  2D1C A;  4AJ3 A;  2Y40 A;  4HCX A;  1A05 A;  1DR0 A;  1IPD A;  5I96 A;  3VL7 A;  1GC9 A;  5GRH B;  3INM A;  4L06 A;  3ICD A;  1V94 A;  4AJB A;  5GRE B;  3BLX B;  5L58 A;  1GC8 A;  2IV0 A;  2DHT A;  4AOV A;  1XAA A;  4I3K A;  1HJ6 A;  3LCB C;  4XRX A;  4P69 C;  1VI1 A;  1T09 A;  3U1H A;  1IDE A;  2QFW A;  4I3L A;  5LGE A;  1LWD A;  4YB4 A;  2HI1 A;  2QFX A;  4AJA A;  4L03 A;  1WAL A;  5HN4 A;  1OSJ A;  4KZO A;  3UDU A;  3VMJ A;  1OSI A;  3MAS B;  1DPZ A;  1XKD A;  5GRF B;  1HEX A;  3FMX X;  1AI2 A;  5GRI B;  3WZW A;  4AJC A;  1PB3 A;  1XAD A;  5GRL B;  4Y1P A;  3VML A;  2E0C A;  4JQP A;  1WPW A;  4UMX A;  8ICD A;  2QFY A;  5HN6 A;  1CM7 A;  1P8F A;  1HQS A;  5K10 A;  1AI3 A;  1YXO A;  1V53 A;  3U9E A;  3VL6 A;  2UXQ A;  2Y3Z A;  2Y41 A;  1GRP A;  6ICD A;  5GRH A;  3WZV A;  2D4V A;  1CW1 A;  3AH3 A;  1VLC A;  4IWH A;  2QFV A;  3VMK A;  5GRE A;  5HN3 A;  4F7I A;  1BL5 A;  3TSN A;  4ATY A;  4BNP A;  3VL4 A;  7ICD A;  9ICD A;  5K11 A;  3VKZ A;  1SJS A;  1PS7 A;  3BLV A;  4WUO A;  2ZTW A;  4XXV A;  4AJR A;  1PB1 A;  1W0D A;  3UF6 A;  1ISO A;  1IDD A;  3TNG A;  1IDC A;  1G2U A;  3R8W A;  1U7N A;  5I95 A;  2G4O A;  1XAB A;  5HN5 A;  3LXY A;  1CW7 A;  3WZX A;  3US8 A;  5J32 A;  1IKA A;  4AJS A;  1R8K A;  2UXR A; 
#chains in the Genus database with same CATH topology
 3MAR A;  3MAS A;  2AYQ A;  5GRF A;  3BLX A;  3UDO A;  2Y42 A;  1IDF A;  5GRI A;  3ASJ A;  3VL2 A;  4JA8 A;  5GRL A;  1ZOR A;  5ICD A;  4XS3 A;  1PTM A;  3VL3 A;  1V5B A;  1CW4 A;  1X0L A;  1GRO A;  1YCO A;  5J33 A;  1XGV A;  1CNZ A;  4L04 A;  2E5M A;  5DE1 A;  1XAC A;  3TY4 A;  3MAP A;  3BLV B;  3TY3 A;  5L57 A;  1DR8 A;  4AOY A;  1T0L A;  4AOU A;  1PS6 A;  3WZY A;  5J34 A;  1IDM A;  4UMY A;  3FLK A;  1TYO A;  3DMS A;  4ICD A;  2D1C A;  4AJ3 A;  2Y40 A;  4HCX A;  1A05 A;  1DR0 A;  1IPD A;  5I96 A;  3VL7 A;  1GC9 A;  5GRH B;  3INM A;  4L06 A;  3ICD A;  1V94 A;  4AJB A;  5GRE B;  3BLX B;  5L58 A;  1GC8 A;  2IV0 A;  2DHT A;  4AOV A;  1XAA A;  4I3K A;  1HJ6 A;  3LCB C;  4XRX A;  4P69 C;  1VI1 A;  1T09 A;  3U1H A;  1IDE A;  2QFW A;  4I3L A;  5LGE A;  1LWD A;  4YB4 A;  2HI1 A;  2QFX A;  4AJA A;  4L03 A;  1WAL A;  5HN4 A;  1OSJ A;  4KZO A;  3UDU A;  3VMJ A;  1OSI A;  3MAS B;  1DPZ A;  1XKD A;  5GRF B;  1HEX A;  3FMX X;  1AI2 A;  5GRI B;  3WZW A;  4AJC A;  1PB3 A;  1XAD A;  5GRL B;  4Y1P A;  3VML A;  2E0C A;  4JQP A;  1WPW A;  4UMX A;  8ICD A;  2QFY A;  5HN6 A;  1CM7 A;  1P8F A;  1HQS A;  5K10 A;  1AI3 A;  1YXO A;  1V53 A;  3U9E A;  3VL6 A;  2UXQ A;  2Y3Z A;  2Y41 A;  1GRP A;  6ICD A;  5GRH A;  3WZV A;  2D4V A;  1CW1 A;  3AH3 A;  1VLC A;  4IWH A;  2QFV A;  3VMK A;  5GRE A;  5HN3 A;  4F7I A;  1BL5 A;  3TSN A;  4ATY A;  4BNP A;  3VL4 A;  7ICD A;  9ICD A;  5K11 A;  3VKZ A;  1SJS A;  1PS7 A;  3BLV A;  4WUO A;  2ZTW A;  4XXV A;  4AJR A;  1PB1 A;  1W0D A;  3UF6 A;  1ISO A;  1IDD A;  3TNG A;  1IDC A;  1G2U A;  3R8W A;  1U7N A;  5I95 A;  2G4O A;  1XAB A;  5HN5 A;  3LXY A;  1CW7 A;  3WZX A;  3US8 A;  5J32 A;  1IKA A;  4AJS A;  1R8K A;  2UXR A; 
#chains in the Genus database with same CATH homology
 3MAR A;  3MAS A;  2AYQ A;  5GRF A;  3BLX A;  3UDO A;  2Y42 A;  1IDF A;  5GRI A;  3ASJ A;  3VL2 A;  4JA8 A;  5GRL A;  1ZOR A;  5ICD A;  4XS3 A;  1PTM A;  3VL3 A;  1V5B A;  1CW4 A;  1X0L A;  1GRO A;  1YCO A;  5J33 A;  1XGV A;  1CNZ A;  4L04 A;  2E5M A;  5DE1 A;  1XAC A;  3TY4 A;  3MAP A;  3BLV B;  3TY3 A;  5L57 A;  1DR8 A;  4AOY A;  1T0L A;  4AOU A;  1PS6 A;  3WZY A;  5J34 A;  1IDM A;  4UMY A;  3FLK A;  1TYO A;  3DMS A;  4ICD A;  2D1C A;  4AJ3 A;  2Y40 A;  4HCX A;  1A05 A;  1DR0 A;  1IPD A;  5I96 A;  3VL7 A;  1GC9 A;  5GRH B;  3INM A;  4L06 A;  3ICD A;  1V94 A;  4AJB A;  5GRE B;  3BLX B;  5L58 A;  1GC8 A;  2IV0 A;  2DHT A;  4AOV A;  1XAA A;  4I3K A;  1HJ6 A;  3LCB C;  4XRX A;  4P69 C;  1VI1 A;  1T09 A;  3U1H A;  1IDE A;  2QFW A;  4I3L A;  5LGE A;  1LWD A;  4YB4 A;  2HI1 A;  2QFX A;  4AJA A;  4L03 A;  1WAL A;  5HN4 A;  1OSJ A;  4KZO A;  3UDU A;  3VMJ A;  1OSI A;  3MAS B;  1DPZ A;  1XKD A;  5GRF B;  1HEX A;  3FMX X;  1AI2 A;  5GRI B;  3WZW A;  4AJC A;  1PB3 A;  1XAD A;  5GRL B;  4Y1P A;  3VML A;  2E0C A;  4JQP A;  1WPW A;  4UMX A;  8ICD A;  2QFY A;  5HN6 A;  1CM7 A;  1P8F A;  1HQS A;  5K10 A;  1AI3 A;  1YXO A;  1V53 A;  3U9E A;  3VL6 A;  2UXQ A;  2Y3Z A;  2Y41 A;  1GRP A;  6ICD A;  5GRH A;  3WZV A;  2D4V A;  1CW1 A;  3AH3 A;  1VLC A;  4IWH A;  2QFV A;  3VMK A;  5GRE A;  5HN3 A;  4F7I A;  1BL5 A;  3TSN A;  4ATY A;  4BNP A;  3VL4 A;  7ICD A;  9ICD A;  5K11 A;  3VKZ A;  1SJS A;  1PS7 A;  3BLV A;  4WUO A;  2ZTW A;  4XXV A;  4AJR A;  1PB1 A;  1W0D A;  3UF6 A;  1ISO A;  1IDD A;  3TNG A;  1IDC A;  1G2U A;  3R8W A;  1U7N A;  5I95 A;  2G4O A;  1XAB A;  5HN5 A;  3LXY A;  1CW7 A;  3WZX A;  3US8 A;  5J32 A;  1IKA A;  4AJS A;  1R8K A;  2UXR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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