3VL7A

3-isopropylmalate dehydrogenase from shewanella oneidensis mr-1 at 650 mpa
Total Genus 134
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
sequence length
364
structure length
364
Chain Sequence
SSYQIAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGCEAADAILFGSVGGPKWEKLPPNEQPERGALLPLRGHFELFCNLRPAKLHDGLEHMSPLRSDISARGFDVLCVRELTGGIYFGKPKGRQGEGESEEAFDTMRYSRREISRIARIAFEAARGRRKKVTSVDKANVLACSVLWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIAMLTGSMGLLSSASMNSTGFGLFEPAGGSAPDIAGKGIANPIAQILSAALMLRHSLKQEEAASAIERAVTKALNSGYLTGELLSSDQRHKAKTTVQMGDFIADAVKAGV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords 3-isopropylmalate dehydrogenase
publication title High-pressure-induced water penetration into 3-isopropylmalate dehydrogenase
pubmed doi rcsb
source organism Shewanella oneidensis
total genus 134
structure length 364
sequence length 364
ec nomenclature ec 1.1.1.85: 3-isopropylmalate dehydrogenase.
pdb deposition date 2011-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 3vl7A00
2E0CA 1AI2A 5GRFB 1IDCA 3VL3A 4HCXA 4ICDA 5GREA 2DHTA 5LGEA 1G2UA 1PB3A 1CNZA 1X0LA 1U7NA 3U9EA 3TSNA 5J33A 5L58A 3US8A 1LWDA 1IDEA 2QFYA 4Y1PA 1P8FA 4AJSA 6ICDA 4L03A 5ICDA 3VL2A 1OSIA 3TY3A 2D4VA 2Y42A 1ZORA 2Y41A 3R8WA 5GRIA 1SJSA 3VL6A 1XABA 3BLXA 1HEXA 5GRLB 4AOYA 5GRHA 4AJ3A 5J32A 4ATYA 1DR0A 3FLKA 1BL5A 1IPDA 4F7IA 4L06A 4L04A 3UDOA 5HN5A 1TYOA 4AJCA 5I96A 3WZWA 3LCBC 1A05A 1PS6A 1W0DA 3VMLA 2UXRA 3VMKA 1PB1A 8ICDA 5L57A 5HN6A 1IDDA 3WZYA 3LXYA 4P69C 1YXOA 3MASA 5GRIB 3VKZA 3MAPA 3TNGA 3WZVA 3BLVA 4AJRA 2AYQA 3ASJA 5GREB 4JQPA 5K11A 1XADA 1PS7A 1CW4A 1GC8A 4JA8A 1V5BA 1HJ6A 5GRFA 2IV0A 4KZOA 1IKAA 2QFWA 3FMXX 1HQSA 1T0LA 1XAAA 1XGVA 4AOUA 1GROA 1CW7A 4XS3A 3INMA 1DPZA 1VLCA 1CW1A 3U1HA 5HN3A 2ZTWA 3BLXB 4WUOA 2UXQA 1T09A 2Y3ZA 2E5MA 5GRHB 3ICDA 1R8KA 1IDFA 4AJAA 4AJBA 1IDMA 5K10A 3DMSA 4I3KA 3UF6A 2Y40A 1GRPA 4UMYA 3VL4A 4I3LA 1GC9A 2QFXA 5GRLA 1V94A 4XXVA 1YCOA 4YB4A 3VL7A 1CM7A 1WALA 1OSJA 2HI1A 5HN4A 4IWHA 3WZXA 4XRXA 1WPWA 3MARA 4UMXA 1AI3A 1DR8A 5I95A 1V53A 1XKDA 3MASB 4AOVA 2G4OA 9ICDA 3TY4A 3UDUA 2D1CA 5J34A 1VI1A 1ISOA 7ICDA 3BLVB 3VMJA 2QFVA 5DE1A 1PTMA 3AH3A 4BNPA 1XACA
chains in the Genus database with same CATH superfamily
2E0CA 1AI2A 5GRFB 1IDCA 3VL3A 4HCXA 4ICDA 5GREA 2DHTA 5LGEA 1G2UA 1PB3A 1CNZA 1X0LA 1U7NA 3U9EA 3TSNA 5J33A 5L58A 3US8A 1LWDA 1IDEA 2QFYA 4Y1PA 1P8FA 4AJSA 6ICDA 4L03A 5ICDA 3VL2A 1OSIA 3TY3A 2D4VA 2Y42A 1ZORA 2Y41A 3R8WA 5GRIA 1SJSA 3VL6A 1XABA 3BLXA 1HEXA 5GRLB 4AOYA 5GRHA 4AJ3A 5J32A 4ATYA 1DR0A 3FLKA 1BL5A 1IPDA 4F7IA 4L06A 4L04A 3UDOA 5HN5A 1TYOA 4AJCA 5I96A 3WZWA 3LCBC 1A05A 1PS6A 1W0DA 3VMLA 2UXRA 3VMKA 1PB1A 8ICDA 5L57A 5HN6A 1IDDA 3WZYA 3LXYA 4P69C 1YXOA 3MASA 5GRIB 3VKZA 3MAPA 3TNGA 3WZVA 3BLVA 4AJRA 2AYQA 3ASJA 5GREB 4JQPA 5K11A 1XADA 1PS7A 1CW4A 1GC8A 4JA8A 1V5BA 1HJ6A 5GRFA 2IV0A 4KZOA 1IKAA 2QFWA 3FMXX 1HQSA 1T0LA 1XAAA 1XGVA 4AOUA 1GROA 1CW7A 4XS3A 3INMA 1DPZA 1VLCA 1CW1A 3U1HA 5HN3A 2ZTWA 3BLXB 4WUOA 2UXQA 1T09A 2Y3ZA 2E5MA 5GRHB 3ICDA 1R8KA 1IDFA 4AJAA 4AJBA 1IDMA 5K10A 3DMSA 4I3KA 3UF6A 2Y40A 1GRPA 4UMYA 3VL4A 4I3LA 1GC9A 2QFXA 5GRLA 1V94A 4XXVA 1YCOA 4YB4A 3VL7A 1CM7A 1WALA 1OSJA 2HI1A 5HN4A 4IWHA 3WZXA 4XRXA 1WPWA 3MARA 4UMXA 1AI3A 1DR8A 5I95A 1V53A 1XKDA 3MASB 4AOVA 2G4OA 9ICDA 3TY4A 3UDUA 2D1CA 5J34A 1VI1A 1ISOA 7ICDA 3BLVB 3VMJA 2QFVA 5DE1A 1PTMA 3AH3A 4BNPA 1XACA
chains in the Genus database with same CATH topology
2E0CA 1AI2A 5GRFB 1IDCA 3VL3A 4HCXA 4ICDA 5GREA 2DHTA 5LGEA 1G2UA 1PB3A 1CNZA 1X0LA 1U7NA 3U9EA 3TSNA 5J33A 5L58A 3US8A 1LWDA 1IDEA 2QFYA 4Y1PA 1P8FA 4AJSA 6ICDA 4L03A 5ICDA 3VL2A 1OSIA 3TY3A 2D4VA 2Y42A 1ZORA 2Y41A 3R8WA 5GRIA 1SJSA 3VL6A 1XABA 3BLXA 1HEXA 5GRLB 4AOYA 5GRHA 4AJ3A 5J32A 4ATYA 1DR0A 3FLKA 1BL5A 1IPDA 4F7IA 4L06A 4L04A 3UDOA 5HN5A 1TYOA 4AJCA 5I96A 3WZWA 3LCBC 1A05A 1PS6A 1W0DA 3VMLA 2UXRA 3VMKA 1PB1A 8ICDA 5L57A 5HN6A 1IDDA 3WZYA 3LXYA 4P69C 1YXOA 3MASA 5GRIB 3VKZA 3MAPA 3TNGA 3WZVA 3BLVA 4AJRA 2AYQA 3ASJA 5GREB 4JQPA 5K11A 1XADA 1PS7A 1CW4A 1GC8A 4JA8A 1V5BA 1HJ6A 5GRFA 2IV0A 4KZOA 1IKAA 2QFWA 3FMXX 1HQSA 1T0LA 1XAAA 1XGVA 4AOUA 1GROA 1CW7A 4XS3A 3INMA 1DPZA 1VLCA 1CW1A 3U1HA 5HN3A 2ZTWA 3BLXB 4WUOA 2UXQA 1T09A 2Y3ZA 2E5MA 5GRHB 3ICDA 1R8KA 1IDFA 4AJAA 4AJBA 1IDMA 5K10A 3DMSA 4I3KA 3UF6A 2Y40A 1GRPA 4UMYA 3VL4A 4I3LA 1GC9A 2QFXA 5GRLA 1V94A 4XXVA 1YCOA 4YB4A 3VL7A 1CM7A 1WALA 1OSJA 2HI1A 5HN4A 4IWHA 3WZXA 4XRXA 1WPWA 3MARA 4UMXA 1AI3A 1DR8A 5I95A 1V53A 1XKDA 3MASB 4AOVA 2G4OA 9ICDA 3TY4A 3UDUA 2D1CA 5J34A 1VI1A 1ISOA 7ICDA 3BLVB 3VMJA 2QFVA 5DE1A 1PTMA 3AH3A 4BNPA 1XACA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E0C A;  1AI2 A;  5GRF B;  1IDC A;  3VL3 A;  4HCX A;  4ICD A;  5GRE A;  2DHT A;  5LGE A;  1G2U A;  1PB3 A;  1CNZ A;  1X0L A;  1U7N A;  3U9E A;  3TSN A;  5J33 A;  5L58 A;  3US8 A;  1LWD A;  1IDE A;  2QFY A;  4Y1P A;  1P8F A;  4AJS A;  6ICD A;  4L03 A;  5ICD A;  3VL2 A;  1OSI A;  3TY3 A;  2D4V A;  2Y42 A;  1ZOR A;  2Y41 A;  3R8W A;  5GRI A;  1SJS A;  3VL6 A;  1XAB A;  3BLX A;  1HEX A;  5GRL B;  4AOY A;  5GRH A;  4AJ3 A;  5J32 A;  4ATY A;  1DR0 A;  3FLK A;  1BL5 A;  1IPD A;  4F7I A;  4L06 A;  4L04 A;  3UDO A;  5HN5 A;  1TYO A;  4AJC A;  5I96 A;  3WZW A;  3LCB C;  1A05 A;  1PS6 A;  1W0D A;  3VML A;  2UXR A;  3VMK A;  1PB1 A;  8ICD A;  5L57 A;  5HN6 A;  1IDD A;  3WZY A;  3LXY A;  4P69 C;  1YXO A;  3MAS A;  5GRI B;  3VKZ A;  3MAP A;  3TNG A;  3WZV A;  3BLV A;  4AJR A;  2AYQ A;  3ASJ A;  5GRE B;  4JQP A;  5K11 A;  1XAD A;  1PS7 A;  1CW4 A;  1GC8 A;  4JA8 A;  1V5B A;  1HJ6 A;  5GRF A;  2IV0 A;  4KZO A;  1IKA A;  2QFW A;  3FMX X;  1HQS A;  1T0L A;  1XAA A;  1XGV A;  4AOU A;  1GRO A;  1CW7 A;  4XS3 A;  3INM A;  1DPZ A;  1VLC A;  1CW1 A;  3U1H A;  5HN3 A;  2ZTW A;  3BLX B;  4WUO A;  2UXQ A;  1T09 A;  2Y3Z A;  2E5M A;  5GRH B;  3ICD A;  1R8K A;  1IDF A;  4AJA A;  4AJB A;  1IDM A;  5K10 A;  3DMS A;  4I3K A;  3UF6 A;  2Y40 A;  1GRP A;  4UMY A;  3VL4 A;  4I3L A;  1GC9 A;  2QFX A;  5GRL A;  1V94 A;  4XXV A;  1YCO A;  4YB4 A;  3VL7 A;  1CM7 A;  1WAL A;  1OSJ A;  2HI1 A;  5HN4 A;  4IWH A;  3WZX A;  4XRX A;  1WPW A;  3MAR A;  4UMX A;  1AI3 A;  1DR8 A;  5I95 A;  1V53 A;  1XKD A;  3MAS B;  4AOV A;  2G4O A;  9ICD A;  3TY4 A;  3UDU A;  2D1C A;  5J34 A;  1VI1 A;  1ISO A;  7ICD A;  3BLV B;  3VMJ A;  2QFV A;  5DE1 A;  1PTM A;  3AH3 A;  4BNP A;  1XAC A; 
#chains in the Genus database with same CATH topology
 2E0C A;  1AI2 A;  5GRF B;  1IDC A;  3VL3 A;  4HCX A;  4ICD A;  5GRE A;  2DHT A;  5LGE A;  1G2U A;  1PB3 A;  1CNZ A;  1X0L A;  1U7N A;  3U9E A;  3TSN A;  5J33 A;  5L58 A;  3US8 A;  1LWD A;  1IDE A;  2QFY A;  4Y1P A;  1P8F A;  4AJS A;  6ICD A;  4L03 A;  5ICD A;  3VL2 A;  1OSI A;  3TY3 A;  2D4V A;  2Y42 A;  1ZOR A;  2Y41 A;  3R8W A;  5GRI A;  1SJS A;  3VL6 A;  1XAB A;  3BLX A;  1HEX A;  5GRL B;  4AOY A;  5GRH A;  4AJ3 A;  5J32 A;  4ATY A;  1DR0 A;  3FLK A;  1BL5 A;  1IPD A;  4F7I A;  4L06 A;  4L04 A;  3UDO A;  5HN5 A;  1TYO A;  4AJC A;  5I96 A;  3WZW A;  3LCB C;  1A05 A;  1PS6 A;  1W0D A;  3VML A;  2UXR A;  3VMK A;  1PB1 A;  8ICD A;  5L57 A;  5HN6 A;  1IDD A;  3WZY A;  3LXY A;  4P69 C;  1YXO A;  3MAS A;  5GRI B;  3VKZ A;  3MAP A;  3TNG A;  3WZV A;  3BLV A;  4AJR A;  2AYQ A;  3ASJ A;  5GRE B;  4JQP A;  5K11 A;  1XAD A;  1PS7 A;  1CW4 A;  1GC8 A;  4JA8 A;  1V5B A;  1HJ6 A;  5GRF A;  2IV0 A;  4KZO A;  1IKA A;  2QFW A;  3FMX X;  1HQS A;  1T0L A;  1XAA A;  1XGV A;  4AOU A;  1GRO A;  1CW7 A;  4XS3 A;  3INM A;  1DPZ A;  1VLC A;  1CW1 A;  3U1H A;  5HN3 A;  2ZTW A;  3BLX B;  4WUO A;  2UXQ A;  1T09 A;  2Y3Z A;  2E5M A;  5GRH B;  3ICD A;  1R8K A;  1IDF A;  4AJA A;  4AJB A;  1IDM A;  5K10 A;  3DMS A;  4I3K A;  3UF6 A;  2Y40 A;  1GRP A;  4UMY A;  3VL4 A;  4I3L A;  1GC9 A;  2QFX A;  5GRL A;  1V94 A;  4XXV A;  1YCO A;  4YB4 A;  3VL7 A;  1CM7 A;  1WAL A;  1OSJ A;  2HI1 A;  5HN4 A;  4IWH A;  3WZX A;  4XRX A;  1WPW A;  3MAR A;  4UMX A;  1AI3 A;  1DR8 A;  5I95 A;  1V53 A;  1XKD A;  3MAS B;  4AOV A;  2G4O A;  9ICD A;  3TY4 A;  3UDU A;  2D1C A;  5J34 A;  1VI1 A;  1ISO A;  7ICD A;  3BLV B;  3VMJ A;  2QFV A;  5DE1 A;  1PTM A;  3AH3 A;  4BNP A;  1XAC A; 
#chains in the Genus database with same CATH homology
 2E0C A;  1AI2 A;  5GRF B;  1IDC A;  3VL3 A;  4HCX A;  4ICD A;  5GRE A;  2DHT A;  5LGE A;  1G2U A;  1PB3 A;  1CNZ A;  1X0L A;  1U7N A;  3U9E A;  3TSN A;  5J33 A;  5L58 A;  3US8 A;  1LWD A;  1IDE A;  2QFY A;  4Y1P A;  1P8F A;  4AJS A;  6ICD A;  4L03 A;  5ICD A;  3VL2 A;  1OSI A;  3TY3 A;  2D4V A;  2Y42 A;  1ZOR A;  2Y41 A;  3R8W A;  5GRI A;  1SJS A;  3VL6 A;  1XAB A;  3BLX A;  1HEX A;  5GRL B;  4AOY A;  5GRH A;  4AJ3 A;  5J32 A;  4ATY A;  1DR0 A;  3FLK A;  1BL5 A;  1IPD A;  4F7I A;  4L06 A;  4L04 A;  3UDO A;  5HN5 A;  1TYO A;  4AJC A;  5I96 A;  3WZW A;  3LCB C;  1A05 A;  1PS6 A;  1W0D A;  3VML A;  2UXR A;  3VMK A;  1PB1 A;  8ICD A;  5L57 A;  5HN6 A;  1IDD A;  3WZY A;  3LXY A;  4P69 C;  1YXO A;  3MAS A;  5GRI B;  3VKZ A;  3MAP A;  3TNG A;  3WZV A;  3BLV A;  4AJR A;  2AYQ A;  3ASJ A;  5GRE B;  4JQP A;  5K11 A;  1XAD A;  1PS7 A;  1CW4 A;  1GC8 A;  4JA8 A;  1V5B A;  1HJ6 A;  5GRF A;  2IV0 A;  4KZO A;  1IKA A;  2QFW A;  3FMX X;  1HQS A;  1T0L A;  1XAA A;  1XGV A;  4AOU A;  1GRO A;  1CW7 A;  4XS3 A;  3INM A;  1DPZ A;  1VLC A;  1CW1 A;  3U1H A;  5HN3 A;  2ZTW A;  3BLX B;  4WUO A;  2UXQ A;  1T09 A;  2Y3Z A;  2E5M A;  5GRH B;  3ICD A;  1R8K A;  1IDF A;  4AJA A;  4AJB A;  1IDM A;  5K10 A;  3DMS A;  4I3K A;  3UF6 A;  2Y40 A;  1GRP A;  4UMY A;  3VL4 A;  4I3L A;  1GC9 A;  2QFX A;  5GRL A;  1V94 A;  4XXV A;  1YCO A;  4YB4 A;  3VL7 A;  1CM7 A;  1WAL A;  1OSJ A;  2HI1 A;  5HN4 A;  4IWH A;  3WZX A;  4XRX A;  1WPW A;  3MAR A;  4UMX A;  1AI3 A;  1DR8 A;  5I95 A;  1V53 A;  1XKD A;  3MAS B;  4AOV A;  2G4O A;  9ICD A;  3TY4 A;  3UDU A;  2D1C A;  5J34 A;  1VI1 A;  1ISO A;  7ICD A;  3BLV B;  3VMJ A;  2QFV A;  5DE1 A;  1PTM A;  3AH3 A;  4BNP A;  1XAC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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