3VLXA

Assimilatory nitrite reductase (nii3) - n226k mutant - ligand free form from tobacco leaf
Total Genus 193
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
193
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Nitrite reductase
publication title X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity
pubmed doi rcsb
source organism Nicotiana tabacum
total genus 193
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlxA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlxA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vlxA01
3B0HA 4S39A 3VM0A 3MMAB 3AOPA 3MM5A 4GEPA 3VLZA 3VKTA 4HTRA 7GEPA 5AOPA 3OR2B 3MM6A 4G38A 1ZJ8A 5GEPA 3B0LA 2GEPA 3MM5B 3MM9A 3OR1A 4S3CA 3B0MA 3MM6B 4G9PA 3B0JA 2XSJA 3MM7A 3MMCA 2V4JA 4G39A 3MM8A 3MM9B 3OR1B 3MMBA 4S3BA 3VKSA 4S3FA 2XSJB 3MM7B 3MMCB 4S3AA 2V4JB 4S3DA 3VLYA 3B0NA 3MM8B 3VKRA 3MMBB 1ZJ9A 3B0GA 3VM1A 3VKQA 2AOPA 6GEPA 3MMAA 8GEPA 3GEOA 2AKJA 3VLXA 3VKPA 3OR2A 3NOYA 2Y0FA 4S38A 4S3EA 1AOPA 4S23A 4AOPA
chains in the Genus database with same CATH superfamily
3B0HA 4S39A 3VM0A 3MMAB 3AOPA 3MM5A 4GEPA 3VLZA 3VKTA 4HTRA 7GEPA 5AOPA 3OR2B 3MM6A 4G38A 1ZJ8A 5GEPA 3B0LA 2GEPA 3MM5B 3MM9A 3OR1A 4S3CA 3B0MA 3MM6B 4G9PA 3B0JA 2XSJA 3MM7A 3MMCA 2V4JA 4G39A 3MM8A 3MM9B 3OR1B 3MMBA 4S3BA 3VKSA 4S3FA 2XSJB 3MM7B 3MMCB 4S3AA 2V4JB 4S3DA 3VLYA 3B0NA 3MM8B 3VKRA 3MMBB 1ZJ9A 3B0GA 3VM1A 3VKQA 2AOPA 6GEPA 3MMAA 8GEPA 3GEOA 2AKJA 3VLXA 3VKPA 3OR2A 3NOYA 2Y0FA 4S38A 4S3EA 1AOPA 4S23A 4AOPA
chains in the Genus database with same CATH topology
3B0HA 4S39A 3VM0A 3MMAB 3AOPA 3MM5A 4GEPA 3VLZA 3VKTA 4HTRA 7GEPA 5AOPA 3OR2B 3MM6A 4G38A 1ZJ8A 5GEPA 3B0LA 2GEPA 3MM5B 3MM9A 3OR1A 4S3CA 3B0MA 3MM6B 4G9PA 3B0JA 2XSJA 3MM7A 3MMCA 2V4JA 4G39A 3MM8A 3MM9B 3OR1B 3MMBA 4S3BA 3VKSA 4S3FA 2XSJB 3MM7B 3MMCB 4S3AA 2V4JB 4S3DA 3VLYA 3B0NA 3MM8B 3VKRA 3MMBB 1ZJ9A 3B0GA 3VM1A 3VKQA 2AOPA 6GEPA 3MMAA 8GEPA 3GEOA 2AKJA 3VLXA 3VKPA 3OR2A 3NOYA 2Y0FA 4S38A 4S3EA 1AOPA 4S23A 4AOPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B0H A;  4S39 A;  3VM0 A;  3MMA B;  3AOP A;  3MM5 A;  4GEP A;  3VLZ A;  3VKT A;  4HTR A;  7GEP A;  5AOP A;  3OR2 B;  3MM6 A;  4G38 A;  1ZJ8 A;  5GEP A;  3B0L A;  2GEP A;  3MM5 B;  3MM9 A;  3OR1 A;  4S3C A;  3B0M A;  3MM6 B;  4G9P A;  3B0J A;  2XSJ A;  3MM7 A;  3MMC A;  2V4J A;  4G39 A;  3MM8 A;  3MM9 B;  3OR1 B;  3MMB A;  4S3B A;  3VKS A;  4S3F A;  2XSJ B;  3MM7 B;  3MMC B;  4S3A A;  2V4J B;  4S3D A;  3VLY A;  3B0N A;  3MM8 B;  3VKR A;  3MMB B;  1ZJ9 A;  3B0G A;  3VM1 A;  3VKQ A;  2AOP A;  6GEP A;  3MMA A;  8GEP A;  3GEO A;  2AKJ A;  3VLX A;  3VKP A;  3OR2 A;  3NOY A;  2Y0F A;  4S38 A;  4S3E A;  1AOP A;  4S23 A;  4AOP A; 
#chains in the Genus database with same CATH topology
 3B0H A;  4S39 A;  3VM0 A;  3MMA B;  3AOP A;  3MM5 A;  4GEP A;  3VLZ A;  3VKT A;  4HTR A;  7GEP A;  5AOP A;  3OR2 B;  3MM6 A;  4G38 A;  1ZJ8 A;  5GEP A;  3B0L A;  2GEP A;  3MM5 B;  3MM9 A;  3OR1 A;  4S3C A;  3B0M A;  3MM6 B;  4G9P A;  3B0J A;  2XSJ A;  3MM7 A;  3MMC A;  2V4J A;  4G39 A;  3MM8 A;  3MM9 B;  3OR1 B;  3MMB A;  4S3B A;  3VKS A;  4S3F A;  2XSJ B;  3MM7 B;  3MMC B;  4S3A A;  2V4J B;  4S3D A;  3VLY A;  3B0N A;  3MM8 B;  3VKR A;  3MMB B;  1ZJ9 A;  3B0G A;  3VM1 A;  3VKQ A;  2AOP A;  6GEP A;  3MMA A;  8GEP A;  3GEO A;  2AKJ A;  3VLX A;  3VKP A;  3OR2 A;  3NOY A;  2Y0F A;  4S38 A;  4S3E A;  1AOP A;  4S23 A;  4AOP A; 
#chains in the Genus database with same CATH homology
 3B0H A;  4S39 A;  3VM0 A;  3MMA B;  3AOP A;  3MM5 A;  4GEP A;  3VLZ A;  3VKT A;  4HTR A;  7GEP A;  5AOP A;  3OR2 B;  3MM6 A;  4G38 A;  1ZJ8 A;  5GEP A;  3B0L A;  2GEP A;  3MM5 B;  3MM9 A;  3OR1 A;  4S3C A;  3B0M A;  3MM6 B;  4G9P A;  3B0J A;  2XSJ A;  3MM7 A;  3MMC A;  2V4J A;  4G39 A;  3MM8 A;  3MM9 B;  3OR1 B;  3MMB A;  4S3B A;  3VKS A;  4S3F A;  2XSJ B;  3MM7 B;  3MMC B;  4S3A A;  2V4J B;  4S3D A;  3VLY A;  3B0N A;  3MM8 B;  3VKR A;  3MMB B;  1ZJ9 A;  3B0G A;  3VM1 A;  3VKQ A;  2AOP A;  6GEP A;  3MMA A;  8GEP A;  3GEO A;  2AKJ A;  3VLX A;  3VKP A;  3OR2 A;  3NOY A;  2Y0F A;  4S38 A;  4S3E A;  1AOP A;  4S23 A;  4AOP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...