3VLXA

Assimilatory nitrite reductase (nii3) - n226k mutant - ligand free form from tobacco leaf
Total Genus 193
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
193
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
molecule keywords Nitrite reductase
total genus 193
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlxA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlxA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vlxA01
2AOPA 3NOYA 3B0LA 3VKSA 3MMAB 3B0JA 4G38A 3B0HA 3MM6B 3MMAA 4S38A 3VLXA 3MMBA 3B0NA 3MM6A 3OR2A 4S3EA 3B0MA 3MMBB 5AOPA 3VKTA 3OR2B 4HTRA 4G9PA 6GEPA 3GEOA 3MM5A 3MMCB 3MMCA 2AKJA 3VM0A 4AOPA 1AOPA 3MM8B 2V4JA 3OR1A 3MM8A 2V4JB 3OR1B 4G39A 4S3FA 7GEPA 8GEPA 4S3AA 3VM1A 4S39A 4GEPA 3MM7A 3VKQA 3B0GA 1ZJ8A 3VLZA 3VKRA 3MM7B 4S3BA 2Y0FA 4S3CA 3VLYA 2GEPA 4S3DA 3MM5B 4S23A 3VKPA 3AOPA 1ZJ9A 3MM9B 2XSJA 5GEPA 3MM9A 2XSJB
chains in the Genus database with same CATH superfamily
2AOPA 3NOYA 3B0LA 3VKSA 3MMAB 3B0JA 4G38A 3B0HA 3MM6B 3MMAA 4S38A 3VLXA 3MMBA 3B0NA 3MM6A 3OR2A 4S3EA 3B0MA 3MMBB 5AOPA 3VKTA 3OR2B 4HTRA 4G9PA 6GEPA 3GEOA 3MM5A 3MMCB 3MMCA 2AKJA 3VM0A 4AOPA 1AOPA 3MM8B 2V4JA 3OR1A 3MM8A 2V4JB 3OR1B 4G39A 4S3FA 7GEPA 8GEPA 4S3AA 3VM1A 4S39A 4GEPA 3MM7A 3VKQA 3B0GA 1ZJ8A 3VLZA 3VKRA 3MM7B 4S3BA 2Y0FA 4S3CA 3VLYA 2GEPA 4S3DA 3MM5B 4S23A 3VKPA 3AOPA 1ZJ9A 3MM9B 2XSJA 5GEPA 3MM9A 2XSJB
chains in the Genus database with same CATH topology
2AOPA 3NOYA 3B0LA 3VKSA 3MMAB 3B0JA 4G38A 3B0HA 3MM6B 3MMAA 4S38A 3VLXA 3MMBA 3B0NA 3MM6A 3OR2A 4S3EA 3B0MA 3MMBB 5AOPA 3VKTA 3OR2B 4HTRA 4G9PA 6GEPA 3GEOA 3MM5A 3MMCB 3MMCA 2AKJA 3VM0A 4AOPA 1AOPA 3MM8B 2V4JA 3OR1A 3MM8A 2V4JB 3OR1B 4G39A 4S3FA 7GEPA 8GEPA 4S3AA 3VM1A 4S39A 4GEPA 3MM7A 3VKQA 3B0GA 1ZJ8A 3VLZA 3VKRA 3MM7B 4S3BA 2Y0FA 4S3CA 3VLYA 2GEPA 4S3DA 3MM5B 4S23A 3VKPA 3AOPA 1ZJ9A 3MM9B 2XSJA 5GEPA 3MM9A 2XSJB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AOP A;  3NOY A;  3B0L A;  3VKS A;  3MMA B;  3B0J A;  4G38 A;  3B0H A;  3MM6 B;  3MMA A;  4S38 A;  3VLX A;  3MMB A;  3B0N A;  3MM6 A;  3OR2 A;  4S3E A;  3B0M A;  3MMB B;  5AOP A;  3VKT A;  3OR2 B;  4HTR A;  4G9P A;  6GEP A;  3GEO A;  3MM5 A;  3MMC B;  3MMC A;  2AKJ A;  3VM0 A;  4AOP A;  1AOP A;  3MM8 B;  2V4J A;  3OR1 A;  3MM8 A;  2V4J B;  3OR1 B;  4G39 A;  4S3F A;  7GEP A;  8GEP A;  4S3A A;  3VM1 A;  4S39 A;  4GEP A;  3MM7 A;  3VKQ A;  3B0G A;  1ZJ8 A;  3VLZ A;  3VKR A;  3MM7 B;  4S3B A;  2Y0F A;  4S3C A;  3VLY A;  2GEP A;  4S3D A;  3MM5 B;  4S23 A;  3VKP A;  3AOP A;  1ZJ9 A;  3MM9 B;  2XSJ A;  5GEP A;  3MM9 A;  2XSJ B; 
#chains in the Genus database with same CATH topology
 2AOP A;  3NOY A;  3B0L A;  3VKS A;  3MMA B;  3B0J A;  4G38 A;  3B0H A;  3MM6 B;  3MMA A;  4S38 A;  3VLX A;  3MMB A;  3B0N A;  3MM6 A;  3OR2 A;  4S3E A;  3B0M A;  3MMB B;  5AOP A;  3VKT A;  3OR2 B;  4HTR A;  4G9P A;  6GEP A;  3GEO A;  3MM5 A;  3MMC B;  3MMC A;  2AKJ A;  3VM0 A;  4AOP A;  1AOP A;  3MM8 B;  2V4J A;  3OR1 A;  3MM8 A;  2V4J B;  3OR1 B;  4G39 A;  4S3F A;  7GEP A;  8GEP A;  4S3A A;  3VM1 A;  4S39 A;  4GEP A;  3MM7 A;  3VKQ A;  3B0G A;  1ZJ8 A;  3VLZ A;  3VKR A;  3MM7 B;  4S3B A;  2Y0F A;  4S3C A;  3VLY A;  2GEP A;  4S3D A;  3MM5 B;  4S23 A;  3VKP A;  3AOP A;  1ZJ9 A;  3MM9 B;  2XSJ A;  5GEP A;  3MM9 A;  2XSJ B; 
#chains in the Genus database with same CATH homology
 2AOP A;  3NOY A;  3B0L A;  3VKS A;  3MMA B;  3B0J A;  4G38 A;  3B0H A;  3MM6 B;  3MMA A;  4S38 A;  3VLX A;  3MMB A;  3B0N A;  3MM6 A;  3OR2 A;  4S3E A;  3B0M A;  3MMB B;  5AOP A;  3VKT A;  3OR2 B;  4HTR A;  4G9P A;  6GEP A;  3GEO A;  3MM5 A;  3MMC B;  3MMC A;  2AKJ A;  3VM0 A;  4AOP A;  1AOP A;  3MM8 B;  2V4J A;  3OR1 A;  3MM8 A;  2V4J B;  3OR1 B;  4G39 A;  4S3F A;  7GEP A;  8GEP A;  4S3A A;  3VM1 A;  4S39 A;  4GEP A;  3MM7 A;  3VKQ A;  3B0G A;  1ZJ8 A;  3VLZ A;  3VKR A;  3MM7 B;  4S3B A;  2Y0F A;  4S3C A;  3VLY A;  2GEP A;  4S3D A;  3MM5 B;  4S23 A;  3VKP A;  3AOP A;  1ZJ9 A;  3MM9 B;  2XSJ A;  5GEP A;  3MM9 A;  2XSJ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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