3VLXA

Assimilatory nitrite reductase (nii3) - n226k mutant - ligand free form from tobacco leaf
Total Genus 193
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
193
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Nitrite reductase
publication title X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
total genus 193
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlxA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlxA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vlxA01
3MMAB 5GEPA 3NOYA 1AOPA 3MM7A 3OR2A 3OR1A 1ZJ8A 3MM7B 3OR2B 4AOPA 4S3AA 3MM6A 3B0GA 3OR1B 3MM9A 3MM6B 3VKPA 4HTRA 4S38A 1ZJ9A 3B0MA 3GEOA 3VKRA 4G9PA 4S3EA 3MM9B 3B0JA 2Y0FA 3VM0A 3VLYA 3MMBA 4S3BA 2V4JA 4GEPA 5AOPA 4G39A 3MMBB 3MM8A 3VM1A 8GEPA 2V4JB 3MM5A 3MM8B 4S3CA 2XSJA 3MM5B 3B0LA 7GEPA 3VKQA 6GEPA 2XSJB 3VKSA 4G38A 3B0HA 3VLZA 2GEPA 3B0NA 3MMCA 2AKJA 3AOPA 3MMAA 4S3FA 3MMCB 4S23A 3VLXA 4S39A 2AOPA 4S3DA 3VKTA
chains in the Genus database with same CATH superfamily
3MMAB 5GEPA 3NOYA 1AOPA 3MM7A 3OR2A 3OR1A 1ZJ8A 3MM7B 3OR2B 4AOPA 4S3AA 3MM6A 3B0GA 3OR1B 3MM9A 3MM6B 3VKPA 4HTRA 4S38A 1ZJ9A 3B0MA 3GEOA 3VKRA 4G9PA 4S3EA 3MM9B 3B0JA 2Y0FA 3VM0A 3VLYA 3MMBA 4S3BA 2V4JA 4GEPA 5AOPA 4G39A 3MMBB 3MM8A 3VM1A 8GEPA 2V4JB 3MM5A 3MM8B 4S3CA 2XSJA 3MM5B 3B0LA 7GEPA 3VKQA 6GEPA 2XSJB 3VKSA 4G38A 3B0HA 3VLZA 2GEPA 3B0NA 3MMCA 2AKJA 3AOPA 3MMAA 4S3FA 3MMCB 4S23A 3VLXA 4S39A 2AOPA 4S3DA 3VKTA
chains in the Genus database with same CATH topology
3MMAB 5GEPA 3NOYA 1AOPA 3MM7A 3OR2A 3OR1A 1ZJ8A 3MM7B 3OR2B 4AOPA 4S3AA 3MM6A 3B0GA 3OR1B 3MM9A 3MM6B 3VKPA 4HTRA 4S38A 1ZJ9A 3B0MA 3GEOA 3VKRA 4G9PA 4S3EA 3MM9B 3B0JA 2Y0FA 3VM0A 3VLYA 3MMBA 4S3BA 2V4JA 4GEPA 5AOPA 4G39A 3MMBB 3MM8A 3VM1A 8GEPA 2V4JB 3MM5A 3MM8B 4S3CA 2XSJA 3MM5B 3B0LA 7GEPA 3VKQA 6GEPA 2XSJB 3VKSA 4G38A 3B0HA 3VLZA 2GEPA 3B0NA 3MMCA 2AKJA 3AOPA 3MMAA 4S3FA 3MMCB 4S23A 3VLXA 4S39A 2AOPA 4S3DA 3VKTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MMA B;  5GEP A;  3NOY A;  1AOP A;  3MM7 A;  3OR2 A;  3OR1 A;  1ZJ8 A;  3MM7 B;  3OR2 B;  4AOP A;  4S3A A;  3MM6 A;  3B0G A;  3OR1 B;  3MM9 A;  3MM6 B;  3VKP A;  4HTR A;  4S38 A;  1ZJ9 A;  3B0M A;  3GEO A;  3VKR A;  4G9P A;  4S3E A;  3MM9 B;  3B0J A;  2Y0F A;  3VM0 A;  3VLY A;  3MMB A;  4S3B A;  2V4J A;  4GEP A;  5AOP A;  4G39 A;  3MMB B;  3MM8 A;  3VM1 A;  8GEP A;  2V4J B;  3MM5 A;  3MM8 B;  4S3C A;  2XSJ A;  3MM5 B;  3B0L A;  7GEP A;  3VKQ A;  6GEP A;  2XSJ B;  3VKS A;  4G38 A;  3B0H A;  3VLZ A;  2GEP A;  3B0N A;  3MMC A;  2AKJ A;  3AOP A;  3MMA A;  4S3F A;  3MMC B;  4S23 A;  3VLX A;  4S39 A;  2AOP A;  4S3D A;  3VKT A; 
#chains in the Genus database with same CATH topology
 3MMA B;  5GEP A;  3NOY A;  1AOP A;  3MM7 A;  3OR2 A;  3OR1 A;  1ZJ8 A;  3MM7 B;  3OR2 B;  4AOP A;  4S3A A;  3MM6 A;  3B0G A;  3OR1 B;  3MM9 A;  3MM6 B;  3VKP A;  4HTR A;  4S38 A;  1ZJ9 A;  3B0M A;  3GEO A;  3VKR A;  4G9P A;  4S3E A;  3MM9 B;  3B0J A;  2Y0F A;  3VM0 A;  3VLY A;  3MMB A;  4S3B A;  2V4J A;  4GEP A;  5AOP A;  4G39 A;  3MMB B;  3MM8 A;  3VM1 A;  8GEP A;  2V4J B;  3MM5 A;  3MM8 B;  4S3C A;  2XSJ A;  3MM5 B;  3B0L A;  7GEP A;  3VKQ A;  6GEP A;  2XSJ B;  3VKS A;  4G38 A;  3B0H A;  3VLZ A;  2GEP A;  3B0N A;  3MMC A;  2AKJ A;  3AOP A;  3MMA A;  4S3F A;  3MMC B;  4S23 A;  3VLX A;  4S39 A;  2AOP A;  4S3D A;  3VKT A; 
#chains in the Genus database with same CATH homology
 3MMA B;  5GEP A;  3NOY A;  1AOP A;  3MM7 A;  3OR2 A;  3OR1 A;  1ZJ8 A;  3MM7 B;  3OR2 B;  4AOP A;  4S3A A;  3MM6 A;  3B0G A;  3OR1 B;  3MM9 A;  3MM6 B;  3VKP A;  4HTR A;  4S38 A;  1ZJ9 A;  3B0M A;  3GEO A;  3VKR A;  4G9P A;  4S3E A;  3MM9 B;  3B0J A;  2Y0F A;  3VM0 A;  3VLY A;  3MMB A;  4S3B A;  2V4J A;  4GEP A;  5AOP A;  4G39 A;  3MMB B;  3MM8 A;  3VM1 A;  8GEP A;  2V4J B;  3MM5 A;  3MM8 B;  4S3C A;  2XSJ A;  3MM5 B;  3B0L A;  7GEP A;  3VKQ A;  6GEP A;  2XSJ B;  3VKS A;  4G38 A;  3B0H A;  3VLZ A;  2GEP A;  3B0N A;  3MMC A;  2AKJ A;  3AOP A;  3MMA A;  4S3F A;  3MMC B;  4S23 A;  3VLX A;  4S39 A;  2AOP A;  4S3D A;  3VKT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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