3VLZA

Assimilatory nitrite reductase (nii3) - n226k mutant - so3 full complex from tobacco leaf
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
538
structure length
538
Chain Sequence
b'VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Nitrite reductase
publication title X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
total genus 186
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlzA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlzA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vlzA01
4HTRA 3VKTA 3B0GA 3MM6B 3VKSA 3B0LA 4S3FA 4S39A 3VM0A 3VM1A 6GEPA 1ZJ8A 3OR2B 3MM8B 3MMBA 3VKQA 8GEPA 3MM5A 3B0MA 1AOPA 1ZJ9A 3VKRA 3MMAA 3AOPA 3VLZA 3B0NA 2XSJA 3GEOA 3B0JA 3MMBB 2V4JA 3B0HA 3MM5B 3MM7A 3MMCA 4GEPA 3VLYA 7GEPA 3MMAB 4S3BA 2XSJB 3NOYA 3VLXA 3OR1A 3MM7B 2V4JB 2Y0FA 3MMCB 3MM9A 4G38A 2GEPA 4S38A 5GEPA 4AOPA 3OR1B 4S3DA 2AOPA 3MM9B 3MM6A 4G39A 4G9PA 4S3AA 4S3EA 3OR2A 3MM8A 3VKPA 5AOPA 4S3CA 4S23A 2AKJA
chains in the Genus database with same CATH superfamily
4HTRA 3VKTA 3B0GA 3MM6B 3VKSA 3B0LA 4S3FA 4S39A 3VM0A 3VM1A 6GEPA 1ZJ8A 3OR2B 3MM8B 3MMBA 3VKQA 8GEPA 3MM5A 3B0MA 1AOPA 1ZJ9A 3VKRA 3MMAA 3AOPA 3VLZA 3B0NA 2XSJA 3GEOA 3B0JA 3MMBB 2V4JA 3B0HA 3MM5B 3MM7A 3MMCA 4GEPA 3VLYA 7GEPA 3MMAB 4S3BA 2XSJB 3NOYA 3VLXA 3OR1A 3MM7B 2V4JB 2Y0FA 3MMCB 3MM9A 4G38A 2GEPA 4S38A 5GEPA 4AOPA 3OR1B 4S3DA 2AOPA 3MM9B 3MM6A 4G39A 4G9PA 4S3AA 4S3EA 3OR2A 3MM8A 3VKPA 5AOPA 4S3CA 4S23A 2AKJA
chains in the Genus database with same CATH topology
4HTRA 3VKTA 3B0GA 3MM6B 3VKSA 3B0LA 4S3FA 4S39A 3VM0A 3VM1A 6GEPA 1ZJ8A 3OR2B 3MM8B 3MMBA 3VKQA 8GEPA 3MM5A 3B0MA 1AOPA 1ZJ9A 3VKRA 3MMAA 3AOPA 3VLZA 3B0NA 2XSJA 3GEOA 3B0JA 3MMBB 2V4JA 3B0HA 3MM5B 3MM7A 3MMCA 4GEPA 3VLYA 7GEPA 3MMAB 4S3BA 2XSJB 3NOYA 3VLXA 3OR1A 3MM7B 2V4JB 2Y0FA 3MMCB 3MM9A 4G38A 2GEPA 4S38A 5GEPA 4AOPA 3OR1B 4S3DA 2AOPA 3MM9B 3MM6A 4G39A 4G9PA 4S3AA 4S3EA 3OR2A 3MM8A 3VKPA 5AOPA 4S3CA 4S23A 2AKJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HTR A;  3VKT A;  3B0G A;  3MM6 B;  3VKS A;  3B0L A;  4S3F A;  4S39 A;  3VM0 A;  3VM1 A;  6GEP A;  1ZJ8 A;  3OR2 B;  3MM8 B;  3MMB A;  3VKQ A;  8GEP A;  3MM5 A;  3B0M A;  1AOP A;  1ZJ9 A;  3VKR A;  3MMA A;  3AOP A;  3VLZ A;  3B0N A;  2XSJ A;  3GEO A;  3B0J A;  3MMB B;  2V4J A;  3B0H A;  3MM5 B;  3MM7 A;  3MMC A;  4GEP A;  3VLY A;  7GEP A;  3MMA B;  4S3B A;  2XSJ B;  3NOY A;  3VLX A;  3OR1 A;  3MM7 B;  2V4J B;  2Y0F A;  3MMC B;  3MM9 A;  4G38 A;  2GEP A;  4S38 A;  5GEP A;  4AOP A;  3OR1 B;  4S3D A;  2AOP A;  3MM9 B;  3MM6 A;  4G39 A;  4G9P A;  4S3A A;  4S3E A;  3OR2 A;  3MM8 A;  3VKP A;  5AOP A;  4S3C A;  4S23 A;  2AKJ A; 
#chains in the Genus database with same CATH topology
 4HTR A;  3VKT A;  3B0G A;  3MM6 B;  3VKS A;  3B0L A;  4S3F A;  4S39 A;  3VM0 A;  3VM1 A;  6GEP A;  1ZJ8 A;  3OR2 B;  3MM8 B;  3MMB A;  3VKQ A;  8GEP A;  3MM5 A;  3B0M A;  1AOP A;  1ZJ9 A;  3VKR A;  3MMA A;  3AOP A;  3VLZ A;  3B0N A;  2XSJ A;  3GEO A;  3B0J A;  3MMB B;  2V4J A;  3B0H A;  3MM5 B;  3MM7 A;  3MMC A;  4GEP A;  3VLY A;  7GEP A;  3MMA B;  4S3B A;  2XSJ B;  3NOY A;  3VLX A;  3OR1 A;  3MM7 B;  2V4J B;  2Y0F A;  3MMC B;  3MM9 A;  4G38 A;  2GEP A;  4S38 A;  5GEP A;  4AOP A;  3OR1 B;  4S3D A;  2AOP A;  3MM9 B;  3MM6 A;  4G39 A;  4G9P A;  4S3A A;  4S3E A;  3OR2 A;  3MM8 A;  3VKP A;  5AOP A;  4S3C A;  4S23 A;  2AKJ A; 
#chains in the Genus database with same CATH homology
 4HTR A;  3VKT A;  3B0G A;  3MM6 B;  3VKS A;  3B0L A;  4S3F A;  4S39 A;  3VM0 A;  3VM1 A;  6GEP A;  1ZJ8 A;  3OR2 B;  3MM8 B;  3MMB A;  3VKQ A;  8GEP A;  3MM5 A;  3B0M A;  1AOP A;  1ZJ9 A;  3VKR A;  3MMA A;  3AOP A;  3VLZ A;  3B0N A;  2XSJ A;  3GEO A;  3B0J A;  3MMB B;  2V4J A;  3B0H A;  3MM5 B;  3MM7 A;  3MMC A;  4GEP A;  3VLY A;  7GEP A;  3MMA B;  4S3B A;  2XSJ B;  3NOY A;  3VLX A;  3OR1 A;  3MM7 B;  2V4J B;  2Y0F A;  3MMC B;  3MM9 A;  4G38 A;  2GEP A;  4S38 A;  5GEP A;  4AOP A;  3OR1 B;  4S3D A;  2AOP A;  3MM9 B;  3MM6 A;  4G39 A;  4G9P A;  4S3A A;  4S3E A;  3OR2 A;  3MM8 A;  3VKP A;  5AOP A;  4S3C A;  4S23 A;  2AKJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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