3VLZA

Assimilatory nitrite reductase (nii3) - n226k mutant - so3 full complex from tobacco leaf
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
molecule keywords Nitrite reductase
total genus 186
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlzA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlzA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vlzA01
3VKQA 2AOPA 3AOPA 3OR2B 8GEPA 3VLYA 1ZJ9A 3OR1B 3MMAB 3VLXA 2XSJB 1ZJ8A 1AOPA 3VKSA 3MM6B 3MM9B 2Y0FA 3NOYA 4G9PA 3MM6A 2V4JB 3OR2A 2GEPA 3MMBA 4HTRA 3MM7B 3MMAA 3B0GA 4S23A 3B0HA 3MM8A 4S3FA 3VKPA 3MM7A 3B0JA 3MM9A 4S3EA 4S38A 2AKJA 5AOPA 4AOPA 3MM5A 3GEOA 3B0NA 3VM0A 2V4JA 3VKRA 3MMBB 4G38A 7GEPA 3MM5B 3B0MA 4S3DA 4GEPA 3MM8B 3VKTA 4S39A 4S3BA 4S3CA 3VM1A 3MMCA 5GEPA 3OR1A 6GEPA 3B0LA 4G39A 2XSJA 3MMCB 4S3AA 3VLZA
chains in the Genus database with same CATH superfamily
3VKQA 2AOPA 3AOPA 3OR2B 8GEPA 3VLYA 1ZJ9A 3OR1B 3MMAB 3VLXA 2XSJB 1ZJ8A 1AOPA 3VKSA 3MM6B 3MM9B 2Y0FA 3NOYA 4G9PA 3MM6A 2V4JB 3OR2A 2GEPA 3MMBA 4HTRA 3MM7B 3MMAA 3B0GA 4S23A 3B0HA 3MM8A 4S3FA 3VKPA 3MM7A 3B0JA 3MM9A 4S3EA 4S38A 2AKJA 5AOPA 4AOPA 3MM5A 3GEOA 3B0NA 3VM0A 2V4JA 3VKRA 3MMBB 4G38A 7GEPA 3MM5B 3B0MA 4S3DA 4GEPA 3MM8B 3VKTA 4S39A 4S3BA 4S3CA 3VM1A 3MMCA 5GEPA 3OR1A 6GEPA 3B0LA 4G39A 2XSJA 3MMCB 4S3AA 3VLZA
chains in the Genus database with same CATH topology
3VKQA 2AOPA 3AOPA 3OR2B 8GEPA 3VLYA 1ZJ9A 3OR1B 3MMAB 3VLXA 2XSJB 1ZJ8A 1AOPA 3VKSA 3MM6B 3MM9B 2Y0FA 3NOYA 4G9PA 3MM6A 2V4JB 3OR2A 2GEPA 3MMBA 4HTRA 3MM7B 3MMAA 3B0GA 4S23A 3B0HA 3MM8A 4S3FA 3VKPA 3MM7A 3B0JA 3MM9A 4S3EA 4S38A 2AKJA 5AOPA 4AOPA 3MM5A 3GEOA 3B0NA 3VM0A 2V4JA 3VKRA 3MMBB 4G38A 7GEPA 3MM5B 3B0MA 4S3DA 4GEPA 3MM8B 3VKTA 4S39A 4S3BA 4S3CA 3VM1A 3MMCA 5GEPA 3OR1A 6GEPA 3B0LA 4G39A 2XSJA 3MMCB 4S3AA 3VLZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VKQ A;  2AOP A;  3AOP A;  3OR2 B;  8GEP A;  3VLY A;  1ZJ9 A;  3OR1 B;  3MMA B;  3VLX A;  2XSJ B;  1ZJ8 A;  1AOP A;  3VKS A;  3MM6 B;  3MM9 B;  2Y0F A;  3NOY A;  4G9P A;  3MM6 A;  2V4J B;  3OR2 A;  2GEP A;  3MMB A;  4HTR A;  3MM7 B;  3MMA A;  3B0G A;  4S23 A;  3B0H A;  3MM8 A;  4S3F A;  3VKP A;  3MM7 A;  3B0J A;  3MM9 A;  4S3E A;  4S38 A;  2AKJ A;  5AOP A;  4AOP A;  3MM5 A;  3GEO A;  3B0N A;  3VM0 A;  2V4J A;  3VKR A;  3MMB B;  4G38 A;  7GEP A;  3MM5 B;  3B0M A;  4S3D A;  4GEP A;  3MM8 B;  3VKT A;  4S39 A;  4S3B A;  4S3C A;  3VM1 A;  3MMC A;  5GEP A;  3OR1 A;  6GEP A;  3B0L A;  4G39 A;  2XSJ A;  3MMC B;  4S3A A;  3VLZ A; 
#chains in the Genus database with same CATH topology
 3VKQ A;  2AOP A;  3AOP A;  3OR2 B;  8GEP A;  3VLY A;  1ZJ9 A;  3OR1 B;  3MMA B;  3VLX A;  2XSJ B;  1ZJ8 A;  1AOP A;  3VKS A;  3MM6 B;  3MM9 B;  2Y0F A;  3NOY A;  4G9P A;  3MM6 A;  2V4J B;  3OR2 A;  2GEP A;  3MMB A;  4HTR A;  3MM7 B;  3MMA A;  3B0G A;  4S23 A;  3B0H A;  3MM8 A;  4S3F A;  3VKP A;  3MM7 A;  3B0J A;  3MM9 A;  4S3E A;  4S38 A;  2AKJ A;  5AOP A;  4AOP A;  3MM5 A;  3GEO A;  3B0N A;  3VM0 A;  2V4J A;  3VKR A;  3MMB B;  4G38 A;  7GEP A;  3MM5 B;  3B0M A;  4S3D A;  4GEP A;  3MM8 B;  3VKT A;  4S39 A;  4S3B A;  4S3C A;  3VM1 A;  3MMC A;  5GEP A;  3OR1 A;  6GEP A;  3B0L A;  4G39 A;  2XSJ A;  3MMC B;  4S3A A;  3VLZ A; 
#chains in the Genus database with same CATH homology
 3VKQ A;  2AOP A;  3AOP A;  3OR2 B;  8GEP A;  3VLY A;  1ZJ9 A;  3OR1 B;  3MMA B;  3VLX A;  2XSJ B;  1ZJ8 A;  1AOP A;  3VKS A;  3MM6 B;  3MM9 B;  2Y0F A;  3NOY A;  4G9P A;  3MM6 A;  2V4J B;  3OR2 A;  2GEP A;  3MMB A;  4HTR A;  3MM7 B;  3MMA A;  3B0G A;  4S23 A;  3B0H A;  3MM8 A;  4S3F A;  3VKP A;  3MM7 A;  3B0J A;  3MM9 A;  4S3E A;  4S38 A;  2AKJ A;  5AOP A;  4AOP A;  3MM5 A;  3GEO A;  3B0N A;  3VM0 A;  2V4J A;  3VKR A;  3MMB B;  4G38 A;  7GEP A;  3MM5 B;  3B0M A;  4S3D A;  4GEP A;  3MM8 B;  3VKT A;  4S39 A;  4S3B A;  4S3C A;  3VM1 A;  3MMC A;  5GEP A;  3OR1 A;  6GEP A;  3B0L A;  4G39 A;  2XSJ A;  3MMC B;  4S3A A;  3VLZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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