3VM0A

Assimilatory nitrite reductase (nii3) - n226k mutant - no2 complex from tobacco leaf
Total Genus 194
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
538
structure length
538
Chain Sequence
b'VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Nitrite reductase
publication title X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
total genus 194
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vm0A02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vm0A03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vm0A01
2V4JA 4G39A 3OR2B 7GEPA 3MM6A 2XSJB 2Y0FA 5AOPA 2AKJA 6GEPA 4S39A 2GEPA 3MM7B 4S3DA 4S3FA 3MM5A 4G9PA 4GEPA 3VLZA 3VLYA 3MMBB 3VM1A 3VLXA 3MMCA 3MM9B 3OR1A 4HTRA 1AOPA 3VKQA 2V4JB 4S3AA 3VKSA 3B0HA 3B0LA 3VKTA 3MM6B 3VKRA 3MMAA 3VM0A 3MM5B 3VKPA 4S38A 3MM8A 3B0NA 3MMCB 1ZJ9A 3OR2A 3OR1B 4G38A 4S3EA 4AOPA 3AOPA 2XSJA 8GEPA 5GEPA 3MM7A 4S23A 4S3BA 1ZJ8A 3MMAB 3MMBA 3GEOA 3MM9A 3B0JA 3B0MA 3B0GA 4S3CA 3MM8B 3NOYA 2AOPA
chains in the Genus database with same CATH superfamily
2V4JA 4G39A 3OR2B 7GEPA 3MM6A 2XSJB 2Y0FA 5AOPA 2AKJA 6GEPA 4S39A 2GEPA 3MM7B 4S3DA 4S3FA 3MM5A 4G9PA 4GEPA 3VLZA 3VLYA 3MMBB 3VM1A 3VLXA 3MMCA 3MM9B 3OR1A 4HTRA 1AOPA 3VKQA 2V4JB 4S3AA 3VKSA 3B0HA 3B0LA 3VKTA 3MM6B 3VKRA 3MMAA 3VM0A 3MM5B 3VKPA 4S38A 3MM8A 3B0NA 3MMCB 1ZJ9A 3OR2A 3OR1B 4G38A 4S3EA 4AOPA 3AOPA 2XSJA 8GEPA 5GEPA 3MM7A 4S23A 4S3BA 1ZJ8A 3MMAB 3MMBA 3GEOA 3MM9A 3B0JA 3B0MA 3B0GA 4S3CA 3MM8B 3NOYA 2AOPA
chains in the Genus database with same CATH topology
2V4JA 4G39A 3OR2B 7GEPA 3MM6A 2XSJB 2Y0FA 5AOPA 2AKJA 6GEPA 4S39A 2GEPA 3MM7B 4S3DA 4S3FA 3MM5A 4G9PA 4GEPA 3VLZA 3VLYA 3MMBB 3VM1A 3VLXA 3MMCA 3MM9B 3OR1A 4HTRA 1AOPA 3VKQA 2V4JB 4S3AA 3VKSA 3B0HA 3B0LA 3VKTA 3MM6B 3VKRA 3MMAA 3VM0A 3MM5B 3VKPA 4S38A 3MM8A 3B0NA 3MMCB 1ZJ9A 3OR2A 3OR1B 4G38A 4S3EA 4AOPA 3AOPA 2XSJA 8GEPA 5GEPA 3MM7A 4S23A 4S3BA 1ZJ8A 3MMAB 3MMBA 3GEOA 3MM9A 3B0JA 3B0MA 3B0GA 4S3CA 3MM8B 3NOYA 2AOPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V4J A;  4G39 A;  3OR2 B;  7GEP A;  3MM6 A;  2XSJ B;  2Y0F A;  5AOP A;  2AKJ A;  6GEP A;  4S39 A;  2GEP A;  3MM7 B;  4S3D A;  4S3F A;  3MM5 A;  4G9P A;  4GEP A;  3VLZ A;  3VLY A;  3MMB B;  3VM1 A;  3VLX A;  3MMC A;  3MM9 B;  3OR1 A;  4HTR A;  1AOP A;  3VKQ A;  2V4J B;  4S3A A;  3VKS A;  3B0H A;  3B0L A;  3VKT A;  3MM6 B;  3VKR A;  3MMA A;  3VM0 A;  3MM5 B;  3VKP A;  4S38 A;  3MM8 A;  3B0N A;  3MMC B;  1ZJ9 A;  3OR2 A;  3OR1 B;  4G38 A;  4S3E A;  4AOP A;  3AOP A;  2XSJ A;  8GEP A;  5GEP A;  3MM7 A;  4S23 A;  4S3B A;  1ZJ8 A;  3MMA B;  3MMB A;  3GEO A;  3MM9 A;  3B0J A;  3B0M A;  3B0G A;  4S3C A;  3MM8 B;  3NOY A;  2AOP A; 
#chains in the Genus database with same CATH topology
 2V4J A;  4G39 A;  3OR2 B;  7GEP A;  3MM6 A;  2XSJ B;  2Y0F A;  5AOP A;  2AKJ A;  6GEP A;  4S39 A;  2GEP A;  3MM7 B;  4S3D A;  4S3F A;  3MM5 A;  4G9P A;  4GEP A;  3VLZ A;  3VLY A;  3MMB B;  3VM1 A;  3VLX A;  3MMC A;  3MM9 B;  3OR1 A;  4HTR A;  1AOP A;  3VKQ A;  2V4J B;  4S3A A;  3VKS A;  3B0H A;  3B0L A;  3VKT A;  3MM6 B;  3VKR A;  3MMA A;  3VM0 A;  3MM5 B;  3VKP A;  4S38 A;  3MM8 A;  3B0N A;  3MMC B;  1ZJ9 A;  3OR2 A;  3OR1 B;  4G38 A;  4S3E A;  4AOP A;  3AOP A;  2XSJ A;  8GEP A;  5GEP A;  3MM7 A;  4S23 A;  4S3B A;  1ZJ8 A;  3MMA B;  3MMB A;  3GEO A;  3MM9 A;  3B0J A;  3B0M A;  3B0G A;  4S3C A;  3MM8 B;  3NOY A;  2AOP A; 
#chains in the Genus database with same CATH homology
 2V4J A;  4G39 A;  3OR2 B;  7GEP A;  3MM6 A;  2XSJ B;  2Y0F A;  5AOP A;  2AKJ A;  6GEP A;  4S39 A;  2GEP A;  3MM7 B;  4S3D A;  4S3F A;  3MM5 A;  4G9P A;  4GEP A;  3VLZ A;  3VLY A;  3MMB B;  3VM1 A;  3VLX A;  3MMC A;  3MM9 B;  3OR1 A;  4HTR A;  1AOP A;  3VKQ A;  2V4J B;  4S3A A;  3VKS A;  3B0H A;  3B0L A;  3VKT A;  3MM6 B;  3VKR A;  3MMA A;  3VM0 A;  3MM5 B;  3VKP A;  4S38 A;  3MM8 A;  3B0N A;  3MMC B;  1ZJ9 A;  3OR2 A;  3OR1 B;  4G38 A;  4S3E A;  4AOP A;  3AOP A;  2XSJ A;  8GEP A;  5GEP A;  3MM7 A;  4S23 A;  4S3B A;  1ZJ8 A;  3MMA B;  3MMB A;  3GEO A;  3MM9 A;  3B0J A;  3B0M A;  3B0G A;  4S3C A;  3MM8 B;  3NOY A;  2AOP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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