3VM0A

Assimilatory nitrite reductase (nii3) - n226k mutant - no2 complex from tobacco leaf
Total Genus 194
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Nitrite reductase
publication title X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
total genus 194
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vm0A02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vm0A03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vm0A01
3MMBB 3VKSA 4S3AA 3VLZA 4AOPA 3B0GA 3AOPA 3MMCB 2V4JB 3VM0A 2AKJA 3MM8B 3OR1B 3VLXA 7GEPA 3NOYA 4S23A 3B0MA 4S3DA 2XSJA 3MMAB 4S3CA 8GEPA 3MM5B 3MM6A 4G38A 4HTRA 4G9PA 3B0JA 1AOPA 6GEPA 3VLYA 3VKQA 3VKPA 3VKRA 2AOPA 4GEPA 4S3FA 4G39A 3MM7A 2Y0FA 4S3BA 2GEPA 1ZJ8A 1ZJ9A 3VM1A 3B0LA 2XSJB 3GEOA 3MM6B 3MM9A 3OR2A 3MMBA 5AOPA 3B0NA 2V4JA 3MMCA 4S39A 4S38A 3B0HA 3MM8A 3MM7B 3OR1A 3MMAA 5GEPA 4S3EA 3MM5A 3VKTA 3OR2B 3MM9B
chains in the Genus database with same CATH superfamily
3MMBB 3VKSA 4S3AA 3VLZA 4AOPA 3B0GA 3AOPA 3MMCB 2V4JB 3VM0A 2AKJA 3MM8B 3OR1B 3VLXA 7GEPA 3NOYA 4S23A 3B0MA 4S3DA 2XSJA 3MMAB 4S3CA 8GEPA 3MM5B 3MM6A 4G38A 4HTRA 4G9PA 3B0JA 1AOPA 6GEPA 3VLYA 3VKQA 3VKPA 3VKRA 2AOPA 4GEPA 4S3FA 4G39A 3MM7A 2Y0FA 4S3BA 2GEPA 1ZJ8A 1ZJ9A 3VM1A 3B0LA 2XSJB 3GEOA 3MM6B 3MM9A 3OR2A 3MMBA 5AOPA 3B0NA 2V4JA 3MMCA 4S39A 4S38A 3B0HA 3MM8A 3MM7B 3OR1A 3MMAA 5GEPA 4S3EA 3MM5A 3VKTA 3OR2B 3MM9B
chains in the Genus database with same CATH topology
3MMBB 3VKSA 4S3AA 3VLZA 4AOPA 3B0GA 3AOPA 3MMCB 2V4JB 3VM0A 2AKJA 3MM8B 3OR1B 3VLXA 7GEPA 3NOYA 4S23A 3B0MA 4S3DA 2XSJA 3MMAB 4S3CA 8GEPA 3MM5B 3MM6A 4G38A 4HTRA 4G9PA 3B0JA 1AOPA 6GEPA 3VLYA 3VKQA 3VKPA 3VKRA 2AOPA 4GEPA 4S3FA 4G39A 3MM7A 2Y0FA 4S3BA 2GEPA 1ZJ8A 1ZJ9A 3VM1A 3B0LA 2XSJB 3GEOA 3MM6B 3MM9A 3OR2A 3MMBA 5AOPA 3B0NA 2V4JA 3MMCA 4S39A 4S38A 3B0HA 3MM8A 3MM7B 3OR1A 3MMAA 5GEPA 4S3EA 3MM5A 3VKTA 3OR2B 3MM9B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MMB B;  3VKS A;  4S3A A;  3VLZ A;  4AOP A;  3B0G A;  3AOP A;  3MMC B;  2V4J B;  3VM0 A;  2AKJ A;  3MM8 B;  3OR1 B;  3VLX A;  7GEP A;  3NOY A;  4S23 A;  3B0M A;  4S3D A;  2XSJ A;  3MMA B;  4S3C A;  8GEP A;  3MM5 B;  3MM6 A;  4G38 A;  4HTR A;  4G9P A;  3B0J A;  1AOP A;  6GEP A;  3VLY A;  3VKQ A;  3VKP A;  3VKR A;  2AOP A;  4GEP A;  4S3F A;  4G39 A;  3MM7 A;  2Y0F A;  4S3B A;  2GEP A;  1ZJ8 A;  1ZJ9 A;  3VM1 A;  3B0L A;  2XSJ B;  3GEO A;  3MM6 B;  3MM9 A;  3OR2 A;  3MMB A;  5AOP A;  3B0N A;  2V4J A;  3MMC A;  4S39 A;  4S38 A;  3B0H A;  3MM8 A;  3MM7 B;  3OR1 A;  3MMA A;  5GEP A;  4S3E A;  3MM5 A;  3VKT A;  3OR2 B;  3MM9 B; 
#chains in the Genus database with same CATH topology
 3MMB B;  3VKS A;  4S3A A;  3VLZ A;  4AOP A;  3B0G A;  3AOP A;  3MMC B;  2V4J B;  3VM0 A;  2AKJ A;  3MM8 B;  3OR1 B;  3VLX A;  7GEP A;  3NOY A;  4S23 A;  3B0M A;  4S3D A;  2XSJ A;  3MMA B;  4S3C A;  8GEP A;  3MM5 B;  3MM6 A;  4G38 A;  4HTR A;  4G9P A;  3B0J A;  1AOP A;  6GEP A;  3VLY A;  3VKQ A;  3VKP A;  3VKR A;  2AOP A;  4GEP A;  4S3F A;  4G39 A;  3MM7 A;  2Y0F A;  4S3B A;  2GEP A;  1ZJ8 A;  1ZJ9 A;  3VM1 A;  3B0L A;  2XSJ B;  3GEO A;  3MM6 B;  3MM9 A;  3OR2 A;  3MMB A;  5AOP A;  3B0N A;  2V4J A;  3MMC A;  4S39 A;  4S38 A;  3B0H A;  3MM8 A;  3MM7 B;  3OR1 A;  3MMA A;  5GEP A;  4S3E A;  3MM5 A;  3VKT A;  3OR2 B;  3MM9 B; 
#chains in the Genus database with same CATH homology
 3MMB B;  3VKS A;  4S3A A;  3VLZ A;  4AOP A;  3B0G A;  3AOP A;  3MMC B;  2V4J B;  3VM0 A;  2AKJ A;  3MM8 B;  3OR1 B;  3VLX A;  7GEP A;  3NOY A;  4S23 A;  3B0M A;  4S3D A;  2XSJ A;  3MMA B;  4S3C A;  8GEP A;  3MM5 B;  3MM6 A;  4G38 A;  4HTR A;  4G9P A;  3B0J A;  1AOP A;  6GEP A;  3VLY A;  3VKQ A;  3VKP A;  3VKR A;  2AOP A;  4GEP A;  4S3F A;  4G39 A;  3MM7 A;  2Y0F A;  4S3B A;  2GEP A;  1ZJ8 A;  1ZJ9 A;  3VM1 A;  3B0L A;  2XSJ B;  3GEO A;  3MM6 B;  3MM9 A;  3OR2 A;  3MMB A;  5AOP A;  3B0N A;  2V4J A;  3MMC A;  4S39 A;  4S38 A;  3B0H A;  3MM8 A;  3MM7 B;  3OR1 A;  3MMA A;  5GEP A;  4S3E A;  3MM5 A;  3VKT A;  3OR2 B;  3MM9 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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