3VM1A

Assimilatory nitrite reductase (nii3) - n226k mutant - hco3 complex from tobacco leaf
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Nitrite reductase
publication title X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
total genus 192
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vm1A02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vm1A03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vm1A01
5GEPA 3B0GA 2AKJA 3MM6A 2XSJA 5AOPA 3B0JA 3MM8A 2GEPA 7GEPA 3VLYA 3OR1B 3MM9A 3MMBA 4S3BA 3MMCA 3MMAA 4G9PA 1ZJ9A 4S3EA 4S39A 3B0LA 3VM0A 3B0MA 2AOPA 3MM7B 4S3DA 4HTRA 4S3FA 4S3AA 3OR2B 2V4JB 3VKQA 4GEPA 3VM1A 3VKRA 1ZJ8A 3MM5B 4S23A 3VKTA 3B0NA 3GEOA 3OR1A 8GEPA 4AOPA 4G39A 4S3CA 2XSJB 3VKPA 1AOPA 3VKSA 3MM8B 3AOPA 3MM6B 3MM7A 3VLXA 2Y0FA 6GEPA 3MMBB 3MM9B 3NOYA 3MMCB 2V4JA 3OR2A 4S38A 3MMAB 3B0HA 3MM5A 4G38A 3VLZA
chains in the Genus database with same CATH superfamily
5GEPA 3B0GA 2AKJA 3MM6A 2XSJA 5AOPA 3B0JA 3MM8A 2GEPA 7GEPA 3VLYA 3OR1B 3MM9A 3MMBA 4S3BA 3MMCA 3MMAA 4G9PA 1ZJ9A 4S3EA 4S39A 3B0LA 3VM0A 3B0MA 2AOPA 3MM7B 4S3DA 4HTRA 4S3FA 4S3AA 3OR2B 2V4JB 3VKQA 4GEPA 3VM1A 3VKRA 1ZJ8A 3MM5B 4S23A 3VKTA 3B0NA 3GEOA 3OR1A 8GEPA 4AOPA 4G39A 4S3CA 2XSJB 3VKPA 1AOPA 3VKSA 3MM8B 3AOPA 3MM6B 3MM7A 3VLXA 2Y0FA 6GEPA 3MMBB 3MM9B 3NOYA 3MMCB 2V4JA 3OR2A 4S38A 3MMAB 3B0HA 3MM5A 4G38A 3VLZA
chains in the Genus database with same CATH topology
5GEPA 3B0GA 2AKJA 3MM6A 2XSJA 5AOPA 3B0JA 3MM8A 2GEPA 7GEPA 3VLYA 3OR1B 3MM9A 3MMBA 4S3BA 3MMCA 3MMAA 4G9PA 1ZJ9A 4S3EA 4S39A 3B0LA 3VM0A 3B0MA 2AOPA 3MM7B 4S3DA 4HTRA 4S3FA 4S3AA 3OR2B 2V4JB 3VKQA 4GEPA 3VM1A 3VKRA 1ZJ8A 3MM5B 4S23A 3VKTA 3B0NA 3GEOA 3OR1A 8GEPA 4AOPA 4G39A 4S3CA 2XSJB 3VKPA 1AOPA 3VKSA 3MM8B 3AOPA 3MM6B 3MM7A 3VLXA 2Y0FA 6GEPA 3MMBB 3MM9B 3NOYA 3MMCB 2V4JA 3OR2A 4S38A 3MMAB 3B0HA 3MM5A 4G38A 3VLZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GEP A;  3B0G A;  2AKJ A;  3MM6 A;  2XSJ A;  5AOP A;  3B0J A;  3MM8 A;  2GEP A;  7GEP A;  3VLY A;  3OR1 B;  3MM9 A;  3MMB A;  4S3B A;  3MMC A;  3MMA A;  4G9P A;  1ZJ9 A;  4S3E A;  4S39 A;  3B0L A;  3VM0 A;  3B0M A;  2AOP A;  3MM7 B;  4S3D A;  4HTR A;  4S3F A;  4S3A A;  3OR2 B;  2V4J B;  3VKQ A;  4GEP A;  3VM1 A;  3VKR A;  1ZJ8 A;  3MM5 B;  4S23 A;  3VKT A;  3B0N A;  3GEO A;  3OR1 A;  8GEP A;  4AOP A;  4G39 A;  4S3C A;  2XSJ B;  3VKP A;  1AOP A;  3VKS A;  3MM8 B;  3AOP A;  3MM6 B;  3MM7 A;  3VLX A;  2Y0F A;  6GEP A;  3MMB B;  3MM9 B;  3NOY A;  3MMC B;  2V4J A;  3OR2 A;  4S38 A;  3MMA B;  3B0H A;  3MM5 A;  4G38 A;  3VLZ A; 
#chains in the Genus database with same CATH topology
 5GEP A;  3B0G A;  2AKJ A;  3MM6 A;  2XSJ A;  5AOP A;  3B0J A;  3MM8 A;  2GEP A;  7GEP A;  3VLY A;  3OR1 B;  3MM9 A;  3MMB A;  4S3B A;  3MMC A;  3MMA A;  4G9P A;  1ZJ9 A;  4S3E A;  4S39 A;  3B0L A;  3VM0 A;  3B0M A;  2AOP A;  3MM7 B;  4S3D A;  4HTR A;  4S3F A;  4S3A A;  3OR2 B;  2V4J B;  3VKQ A;  4GEP A;  3VM1 A;  3VKR A;  1ZJ8 A;  3MM5 B;  4S23 A;  3VKT A;  3B0N A;  3GEO A;  3OR1 A;  8GEP A;  4AOP A;  4G39 A;  4S3C A;  2XSJ B;  3VKP A;  1AOP A;  3VKS A;  3MM8 B;  3AOP A;  3MM6 B;  3MM7 A;  3VLX A;  2Y0F A;  6GEP A;  3MMB B;  3MM9 B;  3NOY A;  3MMC B;  2V4J A;  3OR2 A;  4S38 A;  3MMA B;  3B0H A;  3MM5 A;  4G38 A;  3VLZ A; 
#chains in the Genus database with same CATH homology
 5GEP A;  3B0G A;  2AKJ A;  3MM6 A;  2XSJ A;  5AOP A;  3B0J A;  3MM8 A;  2GEP A;  7GEP A;  3VLY A;  3OR1 B;  3MM9 A;  3MMB A;  4S3B A;  3MMC A;  3MMA A;  4G9P A;  1ZJ9 A;  4S3E A;  4S39 A;  3B0L A;  3VM0 A;  3B0M A;  2AOP A;  3MM7 B;  4S3D A;  4HTR A;  4S3F A;  4S3A A;  3OR2 B;  2V4J B;  3VKQ A;  4GEP A;  3VM1 A;  3VKR A;  1ZJ8 A;  3MM5 B;  4S23 A;  3VKT A;  3B0N A;  3GEO A;  3OR1 A;  8GEP A;  4AOP A;  4G39 A;  4S3C A;  2XSJ B;  3VKP A;  1AOP A;  3VKS A;  3MM8 B;  3AOP A;  3MM6 B;  3MM7 A;  3VLX A;  2Y0F A;  6GEP A;  3MMB B;  3MM9 B;  3NOY A;  3MMC B;  2V4J A;  3OR2 A;  4S38 A;  3MMA B;  3B0H A;  3MM5 A;  4G38 A;  3VLZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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