3VMGD

Reduced carbazole-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2011-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3vmgD00
1SQQE 1ULIA 3GZXA 4QDFA 2I7FA 5KLIC 4H44D 5AEUA 4HM5A 1VCKA 4QCKA 3L71E 4HM8A 4U3FE 1EZVE 1EG9A 2B1XA 3L70E 4QURA 1JM1A 1VF5D 2YFJA 1NYKA 1NTME 3GL2A 4NB8D 2XRXA 4NBHD 3N0QA 4OGQD 3H1IE 3CWBE 4P1CH 2E4PA 3D89A 3BCCE 2JO6A 2GBXA 1NDOA 5AEWA 2ZT9D 4H13D 3H1KE 2NUKA 2YFLA 1SQPE 4QUQA 4HM7A 4AIVA 1RFSA 1O7GA 4PV1D 2FYNC 4HM3A 2BMRA 2HMLA 4EMJB 1G8JB 2NVGA 2QJYC 2DE5D 2NWFA 2B24A 2HMMA 2BMOA 2DE7D 4NBAD 2YVJB 3CXHE 3FOUA 4HM1A 1ZRTE 2HMOA 4H0LD 4HM4A 5HL4A 2QJPC 5KLVE 1BE3E 1SQXE 1SQBE 2HMJA 2NVEA 3EQQA 4HM0A 4NBED 4NBCD 3CX5E 3H1LE 4NBBD 1L0LE 1O7HA 3GTSA 3AZCA 3GZYA 5KKZC 2D2CD 4HKVA 1SQVE 4NBGD 2BCCE 1KYOE 1NTZE 1PPJE 2QJKC 2YIUC 3C0DA 2A06E 4NBFD 1RIEA 2IBZE 2XSHA 4PD4E 3VMID 1Q90C 3GL0A 2GBWA 3VCPA 1FQTA 3L73E 3VMHD 1O7NA 3TGUE 3L72E 5BOKA 2FYUE 4HJLA 5CXMA 4QUPA 1BCCE 2E76D 1ULJA 4HM2A 2QPZA 1VM9A 4QDCA 2HMKA 1O7PA 1P84E 1UUVA 1NTKE 1O7MA 2XR8A 1O7WA 3VMGD 3GOBA 4AAYB 2XSOA 2NUMA 3VCAA 2CKFA 1PP9E 3GB4A 4NB9D 4P1BH 3GCEA 4QDDA 3H1JE 2E74D 1WQLA 2BMQA 2DE6D 3GTEA 3L74E 1KB9E 4HM6A 4NBDD 3EN1A 2E4QA 1SJGA 1UUWA 1NU1E 3DQYA 2E75D 3H1HE 1L0NE 2ZYLA 2Q3WA 2HMNA 3L75E 2NVFA 3GKEA 2YFIA 1G8KB 2JZAA 4QDFB
chains in the Genus database with same CATH superfamily
1SQQE 1ULIA 3GZXA 4QDFA 2I7FA 5KLIC 4H44D 5AEUA 4HM5A 1VCKA 4QCKA 3L71E 4HM8A 4U3FE 1EZVE 1EG9A 2B1XA 3L70E 4QURA 1JM1A 1VF5D 2YFJA 1NYKA 1NTME 3GL2A 4NB8D 2XRXA 4NBHD 3N0QA 4OGQD 3H1IE 3CWBE 4P1CH 2E4PA 3D89A 3BCCE 2JO6A 2GBXA 1NDOA 5AEWA 2ZT9D 4H13D 3H1KE 2NUKA 2YFLA 1SQPE 4QUQA 4HM7A 4AIVA 1RFSA 1O7GA 4PV1D 2FYNC 4HM3A 2BMRA 2HMLA 4EMJB 1G8JB 2NVGA 2QJYC 2DE5D 2NWFA 2B24A 2HMMA 2BMOA 2DE7D 4NBAD 2YVJB 3CXHE 3FOUA 4HM1A 1ZRTE 2HMOA 4H0LD 4HM4A 5HL4A 2QJPC 5KLVE 1BE3E 1SQXE 1SQBE 2HMJA 2NVEA 3EQQA 4HM0A 4NBED 4NBCD 3CX5E 3H1LE 4NBBD 1L0LE 1O7HA 3GTSA 3AZCA 3GZYA 5KKZC 2D2CD 4HKVA 1SQVE 4NBGD 2BCCE 1KYOE 1NTZE 1PPJE 2QJKC 2YIUC 3C0DA 2A06E 4NBFD 1RIEA 2IBZE 2XSHA 4PD4E 3VMID 1Q90C 3GL0A 2GBWA 3VCPA 1FQTA 3L73E 3VMHD 1O7NA 3TGUE 3L72E 5BOKA 2FYUE 4HJLA 5CXMA 4QUPA 1BCCE 2E76D 1ULJA 4HM2A 2QPZA 1VM9A 4QDCA 2HMKA 1O7PA 1P84E 1UUVA 1NTKE 1O7MA 2XR8A 1O7WA 3VMGD 3GOBA 4AAYB 2XSOA 2NUMA 3VCAA 2CKFA 1PP9E 3GB4A 4NB9D 4P1BH 3GCEA 4QDDA 3H1JE 2E74D 1WQLA 2BMQA 2DE6D 3GTEA 3L74E 1KB9E 4HM6A 4NBDD 3EN1A 2E4QA 1SJGA 1UUWA 1NU1E 3DQYA 2E75D 3H1HE 1L0NE 2ZYLA 2Q3WA 2HMNA 3L75E 2NVFA 3GKEA 2YFIA 1G8KB 2JZAA 4QDFB
chains in the Genus database with same CATH topology
1SQQE 1ULIA 3GZXA 4QDFA 2I7FA 5KLIC 4H44D 5AEUA 4HM5A 1VCKA 4QCKA 3L71E 4HM8A 4U3FE 1EZVE 1EG9A 2B1XA 3L70E 4QURA 1JM1A 1VF5D 2YFJA 1NYKA 1NTME 3GL2A 4NB8D 2XRXA 4NBHD 3N0QA 4OGQD 3H1IE 3CWBE 4P1CH 2E4PA 3D89A 3BCCE 2JO6A 2GBXA 1NDOA 5AEWA 2ZT9D 4H13D 3H1KE 2NUKA 2YFLA 1SQPE 4QUQA 4HM7A 4AIVA 1RFSA 1O7GA 4PV1D 2FYNC 4HM3A 2BMRA 2HMLA 4EMJB 1G8JB 2NVGA 2QJYC 2DE5D 2NWFA 2B24A 2HMMA 2BMOA 2DE7D 4NBAD 2YVJB 3CXHE 3FOUA 4HM1A 1ZRTE 2HMOA 4H0LD 4HM4A 5HL4A 2QJPC 5KLVE 1BE3E 1SQXE 1SQBE 2HMJA 2NVEA 3EQQA 4HM0A 4NBED 4NBCD 3CX5E 3H1LE 4NBBD 1L0LE 1O7HA 3GTSA 3AZCA 3GZYA 5KKZC 2D2CD 4HKVA 1SQVE 4NBGD 2BCCE 1KYOE 1NTZE 1PPJE 2QJKC 2YIUC 3C0DA 2A06E 4NBFD 1RIEA 2IBZE 2XSHA 4PD4E 3VMID 1Q90C 3GL0A 2GBWA 3VCPA 1FQTA 3L73E 3VMHD 1O7NA 3TGUE 3L72E 5BOKA 2FYUE 4HJLA 5CXMA 4QUPA 1BCCE 2E76D 1ULJA 4HM2A 2QPZA 1VM9A 4QDCA 2HMKA 1O7PA 1P84E 1UUVA 1NTKE 1O7MA 2XR8A 1O7WA 3VMGD 3GOBA 4AAYB 2XSOA 2NUMA 3VCAA 2CKFA 1PP9E 3GB4A 4NB9D 4P1BH 3GCEA 4QDDA 3H1JE 2E74D 1WQLA 2BMQA 2DE6D 3GTEA 3L74E 1KB9E 4HM6A 4NBDD 3EN1A 2E4QA 1SJGA 1UUWA 1NU1E 3DQYA 2E75D 3H1HE 1L0NE 2ZYLA 2Q3WA 2HMNA 3L75E 2NVFA 3GKEA 2YFIA 1G8KB 2JZAA 4QDFB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SQQ E;  1ULI A;  3GZX A;  4QDF A;  2I7F A;  5KLI C;  4H44 D;  5AEU A;  4HM5 A;  1VCK A;  4QCK A;  3L71 E;  4HM8 A;  4U3F E;  1EZV E;  1EG9 A;  2B1X A;  3L70 E;  4QUR A;  1JM1 A;  1VF5 D;  2YFJ A;  1NYK A;  1NTM E;  3GL2 A;  4NB8 D;  2XRX A;  4NBH D;  3N0Q A;  4OGQ D;  3H1I E;  3CWB E;  4P1C H;  2E4P A;  3D89 A;  3BCC E;  2JO6 A;  2GBX A;  1NDO A;  5AEW A;  2ZT9 D;  4H13 D;  3H1K E;  2NUK A;  2YFL A;  1SQP E;  4QUQ A;  4HM7 A;  4AIV A;  1RFS A;  1O7G A;  4PV1 D;  2FYN C;  4HM3 A;  2BMR A;  2HML A;  4EMJ B;  1G8J B;  2NVG A;  2QJY C;  2DE5 D;  2NWF A;  2B24 A;  2HMM A;  2BMO A;  2DE7 D;  4NBA D;  2YVJ B;  3CXH E;  3FOU A;  4HM1 A;  1ZRT E;  2HMO A;  4H0L D;  4HM4 A;  5HL4 A;  2QJP C;  5KLV E;  1BE3 E;  1SQX E;  1SQB E;  2HMJ A;  2NVE A;  3EQQ A;  4HM0 A;  4NBE D;  4NBC D;  3CX5 E;  3H1L E;  4NBB D;  1L0L E;  1O7H A;  3GTS A;  3AZC A;  3GZY A;  5KKZ C;  2D2C D;  4HKV A;  1SQV E;  4NBG D;  2BCC E;  1KYO E;  1NTZ E;  1PPJ E;  2QJK C;  2YIU C;  3C0D A;  2A06 E;  4NBF D;  1RIE A;  2IBZ E;  2XSH A;  4PD4 E;  3VMI D;  1Q90 C;  3GL0 A;  2GBW A;  3VCP A;  1FQT A;  3L73 E;  3VMH D;  1O7N A;  3TGU E;  3L72 E;  5BOK A;  2FYU E;  4HJL A;  5CXM A;  4QUP A;  1BCC E;  2E76 D;  1ULJ A;  4HM2 A;  2QPZ A;  1VM9 A;  4QDC A;  2HMK A;  1O7P A;  1P84 E;  1UUV A;  1NTK E;  1O7M A;  2XR8 A;  1O7W A;  3VMG D;  3GOB A;  4AAY B;  2XSO A;  2NUM A;  3VCA A;  2CKF A;  1PP9 E;  3GB4 A;  4NB9 D;  4P1B H;  3GCE A;  4QDD A;  3H1J E;  2E74 D;  1WQL A;  2BMQ A;  2DE6 D;  3GTE A;  3L74 E;  1KB9 E;  4HM6 A;  4NBD D;  3EN1 A;  2E4Q A;  1SJG A;  1UUW A;  1NU1 E;  3DQY A;  2E75 D;  3H1H E;  1L0N E;  2ZYL A;  2Q3W A;  2HMN A;  3L75 E;  2NVF A;  3GKE A;  2YFI A;  1G8K B;  2JZA A;  4QDF B; 
#chains in the Genus database with same CATH topology
 1SQQ E;  1ULI A;  3GZX A;  4QDF A;  2I7F A;  5KLI C;  4H44 D;  5AEU A;  4HM5 A;  1VCK A;  4QCK A;  3L71 E;  4HM8 A;  4U3F E;  1EZV E;  1EG9 A;  2B1X A;  3L70 E;  4QUR A;  1JM1 A;  1VF5 D;  2YFJ A;  1NYK A;  1NTM E;  3GL2 A;  4NB8 D;  2XRX A;  4NBH D;  3N0Q A;  4OGQ D;  3H1I E;  3CWB E;  4P1C H;  2E4P A;  3D89 A;  3BCC E;  2JO6 A;  2GBX A;  1NDO A;  5AEW A;  2ZT9 D;  4H13 D;  3H1K E;  2NUK A;  2YFL A;  1SQP E;  4QUQ A;  4HM7 A;  4AIV A;  1RFS A;  1O7G A;  4PV1 D;  2FYN C;  4HM3 A;  2BMR A;  2HML A;  4EMJ B;  1G8J B;  2NVG A;  2QJY C;  2DE5 D;  2NWF A;  2B24 A;  2HMM A;  2BMO A;  2DE7 D;  4NBA D;  2YVJ B;  3CXH E;  3FOU A;  4HM1 A;  1ZRT E;  2HMO A;  4H0L D;  4HM4 A;  5HL4 A;  2QJP C;  5KLV E;  1BE3 E;  1SQX E;  1SQB E;  2HMJ A;  2NVE A;  3EQQ A;  4HM0 A;  4NBE D;  4NBC D;  3CX5 E;  3H1L E;  4NBB D;  1L0L E;  1O7H A;  3GTS A;  3AZC A;  3GZY A;  5KKZ C;  2D2C D;  4HKV A;  1SQV E;  4NBG D;  2BCC E;  1KYO E;  1NTZ E;  1PPJ E;  2QJK C;  2YIU C;  3C0D A;  2A06 E;  4NBF D;  1RIE A;  2IBZ E;  2XSH A;  4PD4 E;  3VMI D;  1Q90 C;  3GL0 A;  2GBW A;  3VCP A;  1FQT A;  3L73 E;  3VMH D;  1O7N A;  3TGU E;  3L72 E;  5BOK A;  2FYU E;  4HJL A;  5CXM A;  4QUP A;  1BCC E;  2E76 D;  1ULJ A;  4HM2 A;  2QPZ A;  1VM9 A;  4QDC A;  2HMK A;  1O7P A;  1P84 E;  1UUV A;  1NTK E;  1O7M A;  2XR8 A;  1O7W A;  3VMG D;  3GOB A;  4AAY B;  2XSO A;  2NUM A;  3VCA A;  2CKF A;  1PP9 E;  3GB4 A;  4NB9 D;  4P1B H;  3GCE A;  4QDD A;  3H1J E;  2E74 D;  1WQL A;  2BMQ A;  2DE6 D;  3GTE A;  3L74 E;  1KB9 E;  4HM6 A;  4NBD D;  3EN1 A;  2E4Q A;  1SJG A;  1UUW A;  1NU1 E;  3DQY A;  2E75 D;  3H1H E;  1L0N E;  2ZYL A;  2Q3W A;  2HMN A;  3L75 E;  2NVF A;  3GKE A;  2YFI A;  1G8K B;  2JZA A;  4QDF B; 
#chains in the Genus database with same CATH homology
 1SQQ E;  1ULI A;  3GZX A;  4QDF A;  2I7F A;  5KLI C;  4H44 D;  5AEU A;  4HM5 A;  1VCK A;  4QCK A;  3L71 E;  4HM8 A;  4U3F E;  1EZV E;  1EG9 A;  2B1X A;  3L70 E;  4QUR A;  1JM1 A;  1VF5 D;  2YFJ A;  1NYK A;  1NTM E;  3GL2 A;  4NB8 D;  2XRX A;  4NBH D;  3N0Q A;  4OGQ D;  3H1I E;  3CWB E;  4P1C H;  2E4P A;  3D89 A;  3BCC E;  2JO6 A;  2GBX A;  1NDO A;  5AEW A;  2ZT9 D;  4H13 D;  3H1K E;  2NUK A;  2YFL A;  1SQP E;  4QUQ A;  4HM7 A;  4AIV A;  1RFS A;  1O7G A;  4PV1 D;  2FYN C;  4HM3 A;  2BMR A;  2HML A;  4EMJ B;  1G8J B;  2NVG A;  2QJY C;  2DE5 D;  2NWF A;  2B24 A;  2HMM A;  2BMO A;  2DE7 D;  4NBA D;  2YVJ B;  3CXH E;  3FOU A;  4HM1 A;  1ZRT E;  2HMO A;  4H0L D;  4HM4 A;  5HL4 A;  2QJP C;  5KLV E;  1BE3 E;  1SQX E;  1SQB E;  2HMJ A;  2NVE A;  3EQQ A;  4HM0 A;  4NBE D;  4NBC D;  3CX5 E;  3H1L E;  4NBB D;  1L0L E;  1O7H A;  3GTS A;  3AZC A;  3GZY A;  5KKZ C;  2D2C D;  4HKV A;  1SQV E;  4NBG D;  2BCC E;  1KYO E;  1NTZ E;  1PPJ E;  2QJK C;  2YIU C;  3C0D A;  2A06 E;  4NBF D;  1RIE A;  2IBZ E;  2XSH A;  4PD4 E;  3VMI D;  1Q90 C;  3GL0 A;  2GBW A;  3VCP A;  1FQT A;  3L73 E;  3VMH D;  1O7N A;  3TGU E;  3L72 E;  5BOK A;  2FYU E;  4HJL A;  5CXM A;  4QUP A;  1BCC E;  2E76 D;  1ULJ A;  4HM2 A;  2QPZ A;  1VM9 A;  4QDC A;  2HMK A;  1O7P A;  1P84 E;  1UUV A;  1NTK E;  1O7M A;  2XR8 A;  1O7W A;  3VMG D;  3GOB A;  4AAY B;  2XSO A;  2NUM A;  3VCA A;  2CKF A;  1PP9 E;  3GB4 A;  4NB9 D;  4P1B H;  3GCE A;  4QDD A;  3H1J E;  2E74 D;  1WQL A;  2BMQ A;  2DE6 D;  3GTE A;  3L74 E;  1KB9 E;  4HM6 A;  4NBD D;  3EN1 A;  2E4Q A;  1SJG A;  1UUW A;  1NU1 E;  3DQY A;  2E75 D;  3H1H E;  1L0N E;  2ZYL A;  2Q3W A;  2HMN A;  3L75 E;  2NVF A;  3GKE A;  2YFI A;  1G8K B;  2JZA A;  4QDF B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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