3VMGD

Reduced carbazole-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
b'IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2011-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3vmgD00
2CKFA 1ZRTE 2NVEA 2E75D 4HM4A 1BCCE 1SQVE 4NBFD 4H44D 1O7NA 1VCKA 1PP9E 2E4PA 2JO6A 1L0NE 3GCEA 3TGUE 3L74E 2YFLA 2Q3WA 2E76D 1O7PA 3GTEA 4QCKA 4NB8D 1EG9A 4AIVA 3EN1A 3H1IE 3GKEA 4QDDA 4U3FE 1NU1E 2QJKC 2JZAA 4NBBD 2GBWA 2B24A 3GL0A 4OGQD 3VCAA 5KLIC 1SQPE 1UUVA 1NTZE 1SQBE 1UUWA 2DE6D 3N0QA 3GZXA 3GOBA 2IBZE 3L71E 4QDFB 4HM3A 3L75E 2YIUC 2HMOA 2XSHA 2GBXA 5AEWA 1NYKA 3BCCE 4HM0A 2BMRA 2D2CD 2XRXA 3GTSA 2ZT9D 3EQQA 3D89A 3GL2A 3H1JE 4H0LD 2HMMA 3L72E 1KB9E 3H1LE 1O7WA 3CWBE 1EZVE 4QDCA 3VCPA 2YFIA 4PV1D 4NBDD 2A06E 2HMLA 2QJYC 1RIEA 4NBGD 4NBAD 1NDOA 1G8KB 2I7FA 2YFJA 4NBCD 4HM2A 1NTME 2HMNA 3H1HE 1ULJA 3L70E 2FYNC 1G8JB 2NUKA 1O7MA 4QURA 2HMKA 2HMJA 1Q90C 3VMID 4QUQA 1PPJE 2BCCE 4PD4E 5BOKA 4HJLA 1VF5D 3C0DA 4QUPA 3VMHD 5CXMA 4HM8A 2B1XA 4NB9D 1SQQE 2DE5D 2YVJB 2FYUE 4HKVA 3L73E 1O7GA 2NVFA 3DQYA 4HM7A 4NBHD 3GB4A 1O7HA 5HL4A 5KLVE 4P1CH 3H1KE 4AAYB 4P1BH 1VM9A 5KKZC 2QJPC 3CX5E 4HM5A 1SJGA 2E4QA 3FOUA 2XR8A 2DE7D 4HM1A 1KYOE 2NWFA 2ZYLA 4HM6A 2QPZA 3GZYA 2BMQA 1L0LE 3AZCA 1BE3E 4H13D 4NBED 1ULIA 2NVGA 1NTKE 1JM1A 2NUMA 1FQTA 4EMJB 3VMGD 1SQXE 1RFSA 3CXHE 1P84E 2E74D 5AEUA 2BMOA 2XSOA 4QDFA 1WQLA
chains in the Genus database with same CATH superfamily
2CKFA 1ZRTE 2NVEA 2E75D 4HM4A 1BCCE 1SQVE 4NBFD 4H44D 1O7NA 1VCKA 1PP9E 2E4PA 2JO6A 1L0NE 3GCEA 3TGUE 3L74E 2YFLA 2Q3WA 2E76D 1O7PA 3GTEA 4QCKA 4NB8D 1EG9A 4AIVA 3EN1A 3H1IE 3GKEA 4QDDA 4U3FE 1NU1E 2QJKC 2JZAA 4NBBD 2GBWA 2B24A 3GL0A 4OGQD 3VCAA 5KLIC 1SQPE 1UUVA 1NTZE 1SQBE 1UUWA 2DE6D 3N0QA 3GZXA 3GOBA 2IBZE 3L71E 4QDFB 4HM3A 3L75E 2YIUC 2HMOA 2XSHA 2GBXA 5AEWA 1NYKA 3BCCE 4HM0A 2BMRA 2D2CD 2XRXA 3GTSA 2ZT9D 3EQQA 3D89A 3GL2A 3H1JE 4H0LD 2HMMA 3L72E 1KB9E 3H1LE 1O7WA 3CWBE 1EZVE 4QDCA 3VCPA 2YFIA 4PV1D 4NBDD 2A06E 2HMLA 2QJYC 1RIEA 4NBGD 4NBAD 1NDOA 1G8KB 2I7FA 2YFJA 4NBCD 4HM2A 1NTME 2HMNA 3H1HE 1ULJA 3L70E 2FYNC 1G8JB 2NUKA 1O7MA 4QURA 2HMKA 2HMJA 1Q90C 3VMID 4QUQA 1PPJE 2BCCE 4PD4E 5BOKA 4HJLA 1VF5D 3C0DA 4QUPA 3VMHD 5CXMA 4HM8A 2B1XA 4NB9D 1SQQE 2DE5D 2YVJB 2FYUE 4HKVA 3L73E 1O7GA 2NVFA 3DQYA 4HM7A 4NBHD 3GB4A 1O7HA 5HL4A 5KLVE 4P1CH 3H1KE 4AAYB 4P1BH 1VM9A 5KKZC 2QJPC 3CX5E 4HM5A 1SJGA 2E4QA 3FOUA 2XR8A 2DE7D 4HM1A 1KYOE 2NWFA 2ZYLA 4HM6A 2QPZA 3GZYA 2BMQA 1L0LE 3AZCA 1BE3E 4H13D 4NBED 1ULIA 2NVGA 1NTKE 1JM1A 2NUMA 1FQTA 4EMJB 3VMGD 1SQXE 1RFSA 3CXHE 1P84E 2E74D 5AEUA 2BMOA 2XSOA 4QDFA 1WQLA
chains in the Genus database with same CATH topology
2CKFA 1ZRTE 2NVEA 2E75D 4HM4A 1BCCE 1SQVE 4NBFD 4H44D 1O7NA 1VCKA 1PP9E 2E4PA 2JO6A 1L0NE 3GCEA 3TGUE 3L74E 2YFLA 2Q3WA 2E76D 1O7PA 3GTEA 4QCKA 4NB8D 1EG9A 4AIVA 3EN1A 3H1IE 3GKEA 4QDDA 4U3FE 1NU1E 2QJKC 2JZAA 4NBBD 2GBWA 2B24A 3GL0A 4OGQD 3VCAA 5KLIC 1SQPE 1UUVA 1NTZE 1SQBE 1UUWA 2DE6D 3N0QA 3GZXA 3GOBA 2IBZE 3L71E 4QDFB 4HM3A 3L75E 2YIUC 2HMOA 2XSHA 2GBXA 5AEWA 1NYKA 3BCCE 4HM0A 2BMRA 2D2CD 2XRXA 3GTSA 2ZT9D 3EQQA 3D89A 3GL2A 3H1JE 4H0LD 2HMMA 3L72E 1KB9E 3H1LE 1O7WA 3CWBE 1EZVE 4QDCA 3VCPA 2YFIA 4PV1D 4NBDD 2A06E 2HMLA 2QJYC 1RIEA 4NBGD 4NBAD 1NDOA 1G8KB 2I7FA 2YFJA 4NBCD 4HM2A 1NTME 2HMNA 3H1HE 1ULJA 3L70E 2FYNC 1G8JB 2NUKA 1O7MA 4QURA 2HMKA 2HMJA 1Q90C 3VMID 4QUQA 1PPJE 2BCCE 4PD4E 5BOKA 4HJLA 1VF5D 3C0DA 4QUPA 3VMHD 5CXMA 4HM8A 2B1XA 4NB9D 1SQQE 2DE5D 2YVJB 2FYUE 4HKVA 3L73E 1O7GA 2NVFA 3DQYA 4HM7A 4NBHD 3GB4A 1O7HA 5HL4A 5KLVE 4P1CH 3H1KE 4AAYB 4P1BH 1VM9A 5KKZC 2QJPC 3CX5E 4HM5A 1SJGA 2E4QA 3FOUA 2XR8A 2DE7D 4HM1A 1KYOE 2NWFA 2ZYLA 4HM6A 2QPZA 3GZYA 2BMQA 1L0LE 3AZCA 1BE3E 4H13D 4NBED 1ULIA 2NVGA 1NTKE 1JM1A 2NUMA 1FQTA 4EMJB 3VMGD 1SQXE 1RFSA 3CXHE 1P84E 2E74D 5AEUA 2BMOA 2XSOA 4QDFA 1WQLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CKF A;  1ZRT E;  2NVE A;  2E75 D;  4HM4 A;  1BCC E;  1SQV E;  4NBF D;  4H44 D;  1O7N A;  1VCK A;  1PP9 E;  2E4P A;  2JO6 A;  1L0N E;  3GCE A;  3TGU E;  3L74 E;  2YFL A;  2Q3W A;  2E76 D;  1O7P A;  3GTE A;  4QCK A;  4NB8 D;  1EG9 A;  4AIV A;  3EN1 A;  3H1I E;  3GKE A;  4QDD A;  4U3F E;  1NU1 E;  2QJK C;  2JZA A;  4NBB D;  2GBW A;  2B24 A;  3GL0 A;  4OGQ D;  3VCA A;  5KLI C;  1SQP E;  1UUV A;  1NTZ E;  1SQB E;  1UUW A;  2DE6 D;  3N0Q A;  3GZX A;  3GOB A;  2IBZ E;  3L71 E;  4QDF B;  4HM3 A;  3L75 E;  2YIU C;  2HMO A;  2XSH A;  2GBX A;  5AEW A;  1NYK A;  3BCC E;  4HM0 A;  2BMR A;  2D2C D;  2XRX A;  3GTS A;  2ZT9 D;  3EQQ A;  3D89 A;  3GL2 A;  3H1J E;  4H0L D;  2HMM A;  3L72 E;  1KB9 E;  3H1L E;  1O7W A;  3CWB E;  1EZV E;  4QDC A;  3VCP A;  2YFI A;  4PV1 D;  4NBD D;  2A06 E;  2HML A;  2QJY C;  1RIE A;  4NBG D;  4NBA D;  1NDO A;  1G8K B;  2I7F A;  2YFJ A;  4NBC D;  4HM2 A;  1NTM E;  2HMN A;  3H1H E;  1ULJ A;  3L70 E;  2FYN C;  1G8J B;  2NUK A;  1O7M A;  4QUR A;  2HMK A;  2HMJ A;  1Q90 C;  3VMI D;  4QUQ A;  1PPJ E;  2BCC E;  4PD4 E;  5BOK A;  4HJL A;  1VF5 D;  3C0D A;  4QUP A;  3VMH D;  5CXM A;  4HM8 A;  2B1X A;  4NB9 D;  1SQQ E;  2DE5 D;  2YVJ B;  2FYU E;  4HKV A;  3L73 E;  1O7G A;  2NVF A;  3DQY A;  4HM7 A;  4NBH D;  3GB4 A;  1O7H A;  5HL4 A;  5KLV E;  4P1C H;  3H1K E;  4AAY B;  4P1B H;  1VM9 A;  5KKZ C;  2QJP C;  3CX5 E;  4HM5 A;  1SJG A;  2E4Q A;  3FOU A;  2XR8 A;  2DE7 D;  4HM1 A;  1KYO E;  2NWF A;  2ZYL A;  4HM6 A;  2QPZ A;  3GZY A;  2BMQ A;  1L0L E;  3AZC A;  1BE3 E;  4H13 D;  4NBE D;  1ULI A;  2NVG A;  1NTK E;  1JM1 A;  2NUM A;  1FQT A;  4EMJ B;  3VMG D;  1SQX E;  1RFS A;  3CXH E;  1P84 E;  2E74 D;  5AEU A;  2BMO A;  2XSO A;  4QDF A;  1WQL A; 
#chains in the Genus database with same CATH topology
 2CKF A;  1ZRT E;  2NVE A;  2E75 D;  4HM4 A;  1BCC E;  1SQV E;  4NBF D;  4H44 D;  1O7N A;  1VCK A;  1PP9 E;  2E4P A;  2JO6 A;  1L0N E;  3GCE A;  3TGU E;  3L74 E;  2YFL A;  2Q3W A;  2E76 D;  1O7P A;  3GTE A;  4QCK A;  4NB8 D;  1EG9 A;  4AIV A;  3EN1 A;  3H1I E;  3GKE A;  4QDD A;  4U3F E;  1NU1 E;  2QJK C;  2JZA A;  4NBB D;  2GBW A;  2B24 A;  3GL0 A;  4OGQ D;  3VCA A;  5KLI C;  1SQP E;  1UUV A;  1NTZ E;  1SQB E;  1UUW A;  2DE6 D;  3N0Q A;  3GZX A;  3GOB A;  2IBZ E;  3L71 E;  4QDF B;  4HM3 A;  3L75 E;  2YIU C;  2HMO A;  2XSH A;  2GBX A;  5AEW A;  1NYK A;  3BCC E;  4HM0 A;  2BMR A;  2D2C D;  2XRX A;  3GTS A;  2ZT9 D;  3EQQ A;  3D89 A;  3GL2 A;  3H1J E;  4H0L D;  2HMM A;  3L72 E;  1KB9 E;  3H1L E;  1O7W A;  3CWB E;  1EZV E;  4QDC A;  3VCP A;  2YFI A;  4PV1 D;  4NBD D;  2A06 E;  2HML A;  2QJY C;  1RIE A;  4NBG D;  4NBA D;  1NDO A;  1G8K B;  2I7F A;  2YFJ A;  4NBC D;  4HM2 A;  1NTM E;  2HMN A;  3H1H E;  1ULJ A;  3L70 E;  2FYN C;  1G8J B;  2NUK A;  1O7M A;  4QUR A;  2HMK A;  2HMJ A;  1Q90 C;  3VMI D;  4QUQ A;  1PPJ E;  2BCC E;  4PD4 E;  5BOK A;  4HJL A;  1VF5 D;  3C0D A;  4QUP A;  3VMH D;  5CXM A;  4HM8 A;  2B1X A;  4NB9 D;  1SQQ E;  2DE5 D;  2YVJ B;  2FYU E;  4HKV A;  3L73 E;  1O7G A;  2NVF A;  3DQY A;  4HM7 A;  4NBH D;  3GB4 A;  1O7H A;  5HL4 A;  5KLV E;  4P1C H;  3H1K E;  4AAY B;  4P1B H;  1VM9 A;  5KKZ C;  2QJP C;  3CX5 E;  4HM5 A;  1SJG A;  2E4Q A;  3FOU A;  2XR8 A;  2DE7 D;  4HM1 A;  1KYO E;  2NWF A;  2ZYL A;  4HM6 A;  2QPZ A;  3GZY A;  2BMQ A;  1L0L E;  3AZC A;  1BE3 E;  4H13 D;  4NBE D;  1ULI A;  2NVG A;  1NTK E;  1JM1 A;  2NUM A;  1FQT A;  4EMJ B;  3VMG D;  1SQX E;  1RFS A;  3CXH E;  1P84 E;  2E74 D;  5AEU A;  2BMO A;  2XSO A;  4QDF A;  1WQL A; 
#chains in the Genus database with same CATH homology
 2CKF A;  1ZRT E;  2NVE A;  2E75 D;  4HM4 A;  1BCC E;  1SQV E;  4NBF D;  4H44 D;  1O7N A;  1VCK A;  1PP9 E;  2E4P A;  2JO6 A;  1L0N E;  3GCE A;  3TGU E;  3L74 E;  2YFL A;  2Q3W A;  2E76 D;  1O7P A;  3GTE A;  4QCK A;  4NB8 D;  1EG9 A;  4AIV A;  3EN1 A;  3H1I E;  3GKE A;  4QDD A;  4U3F E;  1NU1 E;  2QJK C;  2JZA A;  4NBB D;  2GBW A;  2B24 A;  3GL0 A;  4OGQ D;  3VCA A;  5KLI C;  1SQP E;  1UUV A;  1NTZ E;  1SQB E;  1UUW A;  2DE6 D;  3N0Q A;  3GZX A;  3GOB A;  2IBZ E;  3L71 E;  4QDF B;  4HM3 A;  3L75 E;  2YIU C;  2HMO A;  2XSH A;  2GBX A;  5AEW A;  1NYK A;  3BCC E;  4HM0 A;  2BMR A;  2D2C D;  2XRX A;  3GTS A;  2ZT9 D;  3EQQ A;  3D89 A;  3GL2 A;  3H1J E;  4H0L D;  2HMM A;  3L72 E;  1KB9 E;  3H1L E;  1O7W A;  3CWB E;  1EZV E;  4QDC A;  3VCP A;  2YFI A;  4PV1 D;  4NBD D;  2A06 E;  2HML A;  2QJY C;  1RIE A;  4NBG D;  4NBA D;  1NDO A;  1G8K B;  2I7F A;  2YFJ A;  4NBC D;  4HM2 A;  1NTM E;  2HMN A;  3H1H E;  1ULJ A;  3L70 E;  2FYN C;  1G8J B;  2NUK A;  1O7M A;  4QUR A;  2HMK A;  2HMJ A;  1Q90 C;  3VMI D;  4QUQ A;  1PPJ E;  2BCC E;  4PD4 E;  5BOK A;  4HJL A;  1VF5 D;  3C0D A;  4QUP A;  3VMH D;  5CXM A;  4HM8 A;  2B1X A;  4NB9 D;  1SQQ E;  2DE5 D;  2YVJ B;  2FYU E;  4HKV A;  3L73 E;  1O7G A;  2NVF A;  3DQY A;  4HM7 A;  4NBH D;  3GB4 A;  1O7H A;  5HL4 A;  5KLV E;  4P1C H;  3H1K E;  4AAY B;  4P1B H;  1VM9 A;  5KKZ C;  2QJP C;  3CX5 E;  4HM5 A;  1SJG A;  2E4Q A;  3FOU A;  2XR8 A;  2DE7 D;  4HM1 A;  1KYO E;  2NWF A;  2ZYL A;  4HM6 A;  2QPZ A;  3GZY A;  2BMQ A;  1L0L E;  3AZC A;  1BE3 E;  4H13 D;  4NBE D;  1ULI A;  2NVG A;  1NTK E;  1JM1 A;  2NUM A;  1FQT A;  4EMJ B;  3VMG D;  1SQX E;  1RFS A;  3CXH E;  1P84 E;  2E74 D;  5AEU A;  2BMO A;  2XSO A;  4QDF A;  1WQL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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