3VMGD

Reduced carbazole-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 19
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Terminal oxygenase component of carbazole
publication title Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2011-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3vmgD00
5AEWA 1SQPE 1G8JB 4NBGD 2YFIA 1UUVA 2D2CD 3CWBE 4HM4A 2I7FA 4HKVA 5HL4A 2NVFA 2E4PA 2Q3WA 3H1KE 2BCCE 1PP9E 2BMRA 4PV1D 3GCEA 2NWFA 1BCCE 1PPJE 4QCKA 4HM5A 1FQTA 4OGQD 4HJLA 5KLIC 1SJGA 1EG9A 4QDDA 1O7HA 4QURA 2NVEA 3GB4A 4H0LD 4HM7A 4NB8D 4QDFB 2HMOA 2CKFA 3H1HE 5KLVE 1VM9A 1ZRTE 2E4QA 4NB9D 4H44D 2BMQA 4NBCD 3FOUA 2NVGA 3L75E 5BOKA 2IBZE 2YVJB 4HM6A 4QUQA 3N0QA 1NU1E 2HMMA 3GOBA 4HM2A 4NBAD 1RFSA 4QUPA 2HMKA 2QJPC 2YFLA 5KKZC 2YFJA 2GBXA 3VCPA 3L72E 3GZYA 3C0DA 4EMJB 1SQVE 2JZAA 4HM8A 3GKEA 3L71E 1P84E 2ZYLA 1O7PA 4QDFA 3L73E 3CXHE 1WQLA 2E74D 3DQYA 1L0LE 2XR8A 1VCKA 3L70E 4P1BH 3GZXA 1VF5D 1O7MA 1RIEA 1Q90C 4HM0A 3D89A 1KYOE 2BMOA 1NYKA 2YIUC 2JO6A 2E75D 2E76D 1ULIA 3GL0A 3H1IE 4H13D 1L0NE 1JM1A 2DE7D 2A06E 5AEUA 1O7WA 4NBFD 4QDCA 1NTME 3H1JE 4NBDD 1SQBE 3L74E 2HMNA 1G8KB 3BCCE 1BE3E 1SQXE 3VMHD 1EZVE 2QJYC 3EN1A 4HM3A 4HM1A 1KB9E 2HMLA 4P1CH 1ULJA 2XRXA 2GBWA 1O7GA 1NTKE 2B24A 2NUMA 2XSHA 4PD4E 5CXMA 4NBHD 3GL2A 2QJKC 3CX5E 1UUWA 4NBED 3VCAA 1SQQE 4U3FE 3H1LE 4NBBD 1NDOA 4AAYB 2NUKA 3EQQA 3TGUE 2QPZA 4AIVA 2B1XA 2DE5D 2ZT9D 3GTEA 3VMGD 3VMID 1O7NA 2HMJA 1NTZE 3AZCA 3GTSA 2DE6D 2XSOA 2FYUE 2FYNC
chains in the Genus database with same CATH superfamily
5AEWA 1SQPE 1G8JB 4NBGD 2YFIA 1UUVA 2D2CD 3CWBE 4HM4A 2I7FA 4HKVA 5HL4A 2NVFA 2E4PA 2Q3WA 3H1KE 2BCCE 1PP9E 2BMRA 4PV1D 3GCEA 2NWFA 1BCCE 1PPJE 4QCKA 4HM5A 1FQTA 4OGQD 4HJLA 5KLIC 1SJGA 1EG9A 4QDDA 1O7HA 4QURA 2NVEA 3GB4A 4H0LD 4HM7A 4NB8D 4QDFB 2HMOA 2CKFA 3H1HE 5KLVE 1VM9A 1ZRTE 2E4QA 4NB9D 4H44D 2BMQA 4NBCD 3FOUA 2NVGA 3L75E 5BOKA 2IBZE 2YVJB 4HM6A 4QUQA 3N0QA 1NU1E 2HMMA 3GOBA 4HM2A 4NBAD 1RFSA 4QUPA 2HMKA 2QJPC 2YFLA 5KKZC 2YFJA 2GBXA 3VCPA 3L72E 3GZYA 3C0DA 4EMJB 1SQVE 2JZAA 4HM8A 3GKEA 3L71E 1P84E 2ZYLA 1O7PA 4QDFA 3L73E 3CXHE 1WQLA 2E74D 3DQYA 1L0LE 2XR8A 1VCKA 3L70E 4P1BH 3GZXA 1VF5D 1O7MA 1RIEA 1Q90C 4HM0A 3D89A 1KYOE 2BMOA 1NYKA 2YIUC 2JO6A 2E75D 2E76D 1ULIA 3GL0A 3H1IE 4H13D 1L0NE 1JM1A 2DE7D 2A06E 5AEUA 1O7WA 4NBFD 4QDCA 1NTME 3H1JE 4NBDD 1SQBE 3L74E 2HMNA 1G8KB 3BCCE 1BE3E 1SQXE 3VMHD 1EZVE 2QJYC 3EN1A 4HM3A 4HM1A 1KB9E 2HMLA 4P1CH 1ULJA 2XRXA 2GBWA 1O7GA 1NTKE 2B24A 2NUMA 2XSHA 4PD4E 5CXMA 4NBHD 3GL2A 2QJKC 3CX5E 1UUWA 4NBED 3VCAA 1SQQE 4U3FE 3H1LE 4NBBD 1NDOA 4AAYB 2NUKA 3EQQA 3TGUE 2QPZA 4AIVA 2B1XA 2DE5D 2ZT9D 3GTEA 3VMGD 3VMID 1O7NA 2HMJA 1NTZE 3AZCA 3GTSA 2DE6D 2XSOA 2FYUE 2FYNC
chains in the Genus database with same CATH topology
5AEWA 1SQPE 1G8JB 4NBGD 2YFIA 1UUVA 2D2CD 3CWBE 4HM4A 2I7FA 4HKVA 5HL4A 2NVFA 2E4PA 2Q3WA 3H1KE 2BCCE 1PP9E 2BMRA 4PV1D 3GCEA 2NWFA 1BCCE 1PPJE 4QCKA 4HM5A 1FQTA 4OGQD 4HJLA 5KLIC 1SJGA 1EG9A 4QDDA 1O7HA 4QURA 2NVEA 3GB4A 4H0LD 4HM7A 4NB8D 4QDFB 2HMOA 2CKFA 3H1HE 5KLVE 1VM9A 1ZRTE 2E4QA 4NB9D 4H44D 2BMQA 4NBCD 3FOUA 2NVGA 3L75E 5BOKA 2IBZE 2YVJB 4HM6A 4QUQA 3N0QA 1NU1E 2HMMA 3GOBA 4HM2A 4NBAD 1RFSA 4QUPA 2HMKA 2QJPC 2YFLA 5KKZC 2YFJA 2GBXA 3VCPA 3L72E 3GZYA 3C0DA 4EMJB 1SQVE 2JZAA 4HM8A 3GKEA 3L71E 1P84E 2ZYLA 1O7PA 4QDFA 3L73E 3CXHE 1WQLA 2E74D 3DQYA 1L0LE 2XR8A 1VCKA 3L70E 4P1BH 3GZXA 1VF5D 1O7MA 1RIEA 1Q90C 4HM0A 3D89A 1KYOE 2BMOA 1NYKA 2YIUC 2JO6A 2E75D 2E76D 1ULIA 3GL0A 3H1IE 4H13D 1L0NE 1JM1A 2DE7D 2A06E 5AEUA 1O7WA 4NBFD 4QDCA 1NTME 3H1JE 4NBDD 1SQBE 3L74E 2HMNA 1G8KB 3BCCE 1BE3E 1SQXE 3VMHD 1EZVE 2QJYC 3EN1A 4HM3A 4HM1A 1KB9E 2HMLA 4P1CH 1ULJA 2XRXA 2GBWA 1O7GA 1NTKE 2B24A 2NUMA 2XSHA 4PD4E 5CXMA 4NBHD 3GL2A 2QJKC 3CX5E 1UUWA 4NBED 3VCAA 1SQQE 4U3FE 3H1LE 4NBBD 1NDOA 4AAYB 2NUKA 3EQQA 3TGUE 2QPZA 4AIVA 2B1XA 2DE5D 2ZT9D 3GTEA 3VMGD 3VMID 1O7NA 2HMJA 1NTZE 3AZCA 3GTSA 2DE6D 2XSOA 2FYUE 2FYNC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AEW A;  1SQP E;  1G8J B;  4NBG D;  2YFI A;  1UUV A;  2D2C D;  3CWB E;  4HM4 A;  2I7F A;  4HKV A;  5HL4 A;  2NVF A;  2E4P A;  2Q3W A;  3H1K E;  2BCC E;  1PP9 E;  2BMR A;  4PV1 D;  3GCE A;  2NWF A;  1BCC E;  1PPJ E;  4QCK A;  4HM5 A;  1FQT A;  4OGQ D;  4HJL A;  5KLI C;  1SJG A;  1EG9 A;  4QDD A;  1O7H A;  4QUR A;  2NVE A;  3GB4 A;  4H0L D;  4HM7 A;  4NB8 D;  4QDF B;  2HMO A;  2CKF A;  3H1H E;  5KLV E;  1VM9 A;  1ZRT E;  2E4Q A;  4NB9 D;  4H44 D;  2BMQ A;  4NBC D;  3FOU A;  2NVG A;  3L75 E;  5BOK A;  2IBZ E;  2YVJ B;  4HM6 A;  4QUQ A;  3N0Q A;  1NU1 E;  2HMM A;  3GOB A;  4HM2 A;  4NBA D;  1RFS A;  4QUP A;  2HMK A;  2QJP C;  2YFL A;  5KKZ C;  2YFJ A;  2GBX A;  3VCP A;  3L72 E;  3GZY A;  3C0D A;  4EMJ B;  1SQV E;  2JZA A;  4HM8 A;  3GKE A;  3L71 E;  1P84 E;  2ZYL A;  1O7P A;  4QDF A;  3L73 E;  3CXH E;  1WQL A;  2E74 D;  3DQY A;  1L0L E;  2XR8 A;  1VCK A;  3L70 E;  4P1B H;  3GZX A;  1VF5 D;  1O7M A;  1RIE A;  1Q90 C;  4HM0 A;  3D89 A;  1KYO E;  2BMO A;  1NYK A;  2YIU C;  2JO6 A;  2E75 D;  2E76 D;  1ULI A;  3GL0 A;  3H1I E;  4H13 D;  1L0N E;  1JM1 A;  2DE7 D;  2A06 E;  5AEU A;  1O7W A;  4NBF D;  4QDC A;  1NTM E;  3H1J E;  4NBD D;  1SQB E;  3L74 E;  2HMN A;  1G8K B;  3BCC E;  1BE3 E;  1SQX E;  3VMH D;  1EZV E;  2QJY C;  3EN1 A;  4HM3 A;  4HM1 A;  1KB9 E;  2HML A;  4P1C H;  1ULJ A;  2XRX A;  2GBW A;  1O7G A;  1NTK E;  2B24 A;  2NUM A;  2XSH A;  4PD4 E;  5CXM A;  4NBH D;  3GL2 A;  2QJK C;  3CX5 E;  1UUW A;  4NBE D;  3VCA A;  1SQQ E;  4U3F E;  3H1L E;  4NBB D;  1NDO A;  4AAY B;  2NUK A;  3EQQ A;  3TGU E;  2QPZ A;  4AIV A;  2B1X A;  2DE5 D;  2ZT9 D;  3GTE A;  3VMG D;  3VMI D;  1O7N A;  2HMJ A;  1NTZ E;  3AZC A;  3GTS A;  2DE6 D;  2XSO A;  2FYU E;  2FYN C; 
#chains in the Genus database with same CATH topology
 5AEW A;  1SQP E;  1G8J B;  4NBG D;  2YFI A;  1UUV A;  2D2C D;  3CWB E;  4HM4 A;  2I7F A;  4HKV A;  5HL4 A;  2NVF A;  2E4P A;  2Q3W A;  3H1K E;  2BCC E;  1PP9 E;  2BMR A;  4PV1 D;  3GCE A;  2NWF A;  1BCC E;  1PPJ E;  4QCK A;  4HM5 A;  1FQT A;  4OGQ D;  4HJL A;  5KLI C;  1SJG A;  1EG9 A;  4QDD A;  1O7H A;  4QUR A;  2NVE A;  3GB4 A;  4H0L D;  4HM7 A;  4NB8 D;  4QDF B;  2HMO A;  2CKF A;  3H1H E;  5KLV E;  1VM9 A;  1ZRT E;  2E4Q A;  4NB9 D;  4H44 D;  2BMQ A;  4NBC D;  3FOU A;  2NVG A;  3L75 E;  5BOK A;  2IBZ E;  2YVJ B;  4HM6 A;  4QUQ A;  3N0Q A;  1NU1 E;  2HMM A;  3GOB A;  4HM2 A;  4NBA D;  1RFS A;  4QUP A;  2HMK A;  2QJP C;  2YFL A;  5KKZ C;  2YFJ A;  2GBX A;  3VCP A;  3L72 E;  3GZY A;  3C0D A;  4EMJ B;  1SQV E;  2JZA A;  4HM8 A;  3GKE A;  3L71 E;  1P84 E;  2ZYL A;  1O7P A;  4QDF A;  3L73 E;  3CXH E;  1WQL A;  2E74 D;  3DQY A;  1L0L E;  2XR8 A;  1VCK A;  3L70 E;  4P1B H;  3GZX A;  1VF5 D;  1O7M A;  1RIE A;  1Q90 C;  4HM0 A;  3D89 A;  1KYO E;  2BMO A;  1NYK A;  2YIU C;  2JO6 A;  2E75 D;  2E76 D;  1ULI A;  3GL0 A;  3H1I E;  4H13 D;  1L0N E;  1JM1 A;  2DE7 D;  2A06 E;  5AEU A;  1O7W A;  4NBF D;  4QDC A;  1NTM E;  3H1J E;  4NBD D;  1SQB E;  3L74 E;  2HMN A;  1G8K B;  3BCC E;  1BE3 E;  1SQX E;  3VMH D;  1EZV E;  2QJY C;  3EN1 A;  4HM3 A;  4HM1 A;  1KB9 E;  2HML A;  4P1C H;  1ULJ A;  2XRX A;  2GBW A;  1O7G A;  1NTK E;  2B24 A;  2NUM A;  2XSH A;  4PD4 E;  5CXM A;  4NBH D;  3GL2 A;  2QJK C;  3CX5 E;  1UUW A;  4NBE D;  3VCA A;  1SQQ E;  4U3F E;  3H1L E;  4NBB D;  1NDO A;  4AAY B;  2NUK A;  3EQQ A;  3TGU E;  2QPZ A;  4AIV A;  2B1X A;  2DE5 D;  2ZT9 D;  3GTE A;  3VMG D;  3VMI D;  1O7N A;  2HMJ A;  1NTZ E;  3AZC A;  3GTS A;  2DE6 D;  2XSO A;  2FYU E;  2FYN C; 
#chains in the Genus database with same CATH homology
 5AEW A;  1SQP E;  1G8J B;  4NBG D;  2YFI A;  1UUV A;  2D2C D;  3CWB E;  4HM4 A;  2I7F A;  4HKV A;  5HL4 A;  2NVF A;  2E4P A;  2Q3W A;  3H1K E;  2BCC E;  1PP9 E;  2BMR A;  4PV1 D;  3GCE A;  2NWF A;  1BCC E;  1PPJ E;  4QCK A;  4HM5 A;  1FQT A;  4OGQ D;  4HJL A;  5KLI C;  1SJG A;  1EG9 A;  4QDD A;  1O7H A;  4QUR A;  2NVE A;  3GB4 A;  4H0L D;  4HM7 A;  4NB8 D;  4QDF B;  2HMO A;  2CKF A;  3H1H E;  5KLV E;  1VM9 A;  1ZRT E;  2E4Q A;  4NB9 D;  4H44 D;  2BMQ A;  4NBC D;  3FOU A;  2NVG A;  3L75 E;  5BOK A;  2IBZ E;  2YVJ B;  4HM6 A;  4QUQ A;  3N0Q A;  1NU1 E;  2HMM A;  3GOB A;  4HM2 A;  4NBA D;  1RFS A;  4QUP A;  2HMK A;  2QJP C;  2YFL A;  5KKZ C;  2YFJ A;  2GBX A;  3VCP A;  3L72 E;  3GZY A;  3C0D A;  4EMJ B;  1SQV E;  2JZA A;  4HM8 A;  3GKE A;  3L71 E;  1P84 E;  2ZYL A;  1O7P A;  4QDF A;  3L73 E;  3CXH E;  1WQL A;  2E74 D;  3DQY A;  1L0L E;  2XR8 A;  1VCK A;  3L70 E;  4P1B H;  3GZX A;  1VF5 D;  1O7M A;  1RIE A;  1Q90 C;  4HM0 A;  3D89 A;  1KYO E;  2BMO A;  1NYK A;  2YIU C;  2JO6 A;  2E75 D;  2E76 D;  1ULI A;  3GL0 A;  3H1I E;  4H13 D;  1L0N E;  1JM1 A;  2DE7 D;  2A06 E;  5AEU A;  1O7W A;  4NBF D;  4QDC A;  1NTM E;  3H1J E;  4NBD D;  1SQB E;  3L74 E;  2HMN A;  1G8K B;  3BCC E;  1BE3 E;  1SQX E;  3VMH D;  1EZV E;  2QJY C;  3EN1 A;  4HM3 A;  4HM1 A;  1KB9 E;  2HML A;  4P1C H;  1ULJ A;  2XRX A;  2GBW A;  1O7G A;  1NTK E;  2B24 A;  2NUM A;  2XSH A;  4PD4 E;  5CXM A;  4NBH D;  3GL2 A;  2QJK C;  3CX5 E;  1UUW A;  4NBE D;  3VCA A;  1SQQ E;  4U3F E;  3H1L E;  4NBB D;  1NDO A;  4AAY B;  2NUK A;  3EQQ A;  3TGU E;  2QPZ A;  4AIV A;  2B1X A;  2DE5 D;  2ZT9 D;  3GTE A;  3VMG D;  3VMI D;  1O7N A;  2HMJ A;  1NTZ E;  3AZC A;  3GTS A;  2DE6 D;  2XSO A;  2FYU E;  2FYN C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...