3VMHD

Oxygen-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 18
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2011-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3vmhD00
1EZVE 2FYUE 1O7MA 2YIUC 3L73E 3BCCE 3GTSA 1NYKA 1JM1A 2E75D 2B1XA 1ZRTE 2E74D 2I7FA 1VF5D 1UUWA 4PD4E 1Q90C 2DE5D 2DE6D 1NTME 3H1IE 2NVEA 1RIEA 2BMOA 5CXMA 2DE7D 4NBBD 1SJGA 2BMRA 4NB9D 4H0LD 2XSHA 4QUQA 4HM3A 4HKVA 4HM4A 2E4QA 3GZXA 4PV1D 1ULJA 4HM0A 3GTEA 3VMGD 2NVGA 1VM9A 3GKEA 1VCKA 4H13D 4NBAD 2HMOA 2HMMA 2Q3WA 2QJKC 5HL4A 3L72E 3VCPA 3H1JE 1SQPE 2GBXA 1G8JB 3GL0A 1FQTA 3N0QA 4HM1A 1G8KB 4NBGD 3CX5E 3VMID 1BCCE 1UUVA 4NBHD 3H1HE 4NBFD 1SQBE 2XRXA 1PP9E 2XR8A 5BOKA 2E4PA 4OGQD 4U3FE 3GOBA 4P1CH 4HM2A 3TGUE 2A06E 1L0LE 2YFLA 1EG9A 3L74E 3C0DA 4NB8D 2JZAA 4QDCA 3VMHD 5KKZC 1SQVE 4QDFB 1O7GA 3D89A 4AAYB 1SQQE 2BMQA 3H1KE 3L71E 1KYOE 4HM8A 5KLVE 4QUPA 3GB4A 4H44D 1SQXE 1KB9E 1O7NA 4HJLA 3CWBE 2JO6A 3L70E 2FYNC 2QJPC 3EN1A 3EQQA 3H1LE 1O7WA 5AEWA 2QPZA 1P84E 2E76D 3VCAA 1ULIA 2YFIA 2ZT9D 4NBCD 4QDDA 2YVJB 1NTKE 3FOUA 1NU1E 2HMJA 3DQYA 4HM5A 5AEUA 2NUMA 1WQLA 1NTZE 4QDFA 1PPJE 2YFJA 2D2CD 1BE3E 1L0NE 2HMKA 2HMNA 4AIVA 4HM6A 3AZCA 4HM7A 2B24A 4P1BH 2CKFA 5KLIC 3GCEA 1NDOA 4NBDD 1O7PA 2NVFA 2NWFA 2GBWA 3CXHE 2IBZE 2BCCE 3GL2A 3GZYA 4EMJB 4QURA 1RFSA 1O7HA 2HMLA 2QJYC 2XSOA 2NUKA 3L75E 4QCKA 4NBED 2ZYLA
chains in the Genus database with same CATH superfamily
1EZVE 2FYUE 1O7MA 2YIUC 3L73E 3BCCE 3GTSA 1NYKA 1JM1A 2E75D 2B1XA 1ZRTE 2E74D 2I7FA 1VF5D 1UUWA 4PD4E 1Q90C 2DE5D 2DE6D 1NTME 3H1IE 2NVEA 1RIEA 2BMOA 5CXMA 2DE7D 4NBBD 1SJGA 2BMRA 4NB9D 4H0LD 2XSHA 4QUQA 4HM3A 4HKVA 4HM4A 2E4QA 3GZXA 4PV1D 1ULJA 4HM0A 3GTEA 3VMGD 2NVGA 1VM9A 3GKEA 1VCKA 4H13D 4NBAD 2HMOA 2HMMA 2Q3WA 2QJKC 5HL4A 3L72E 3VCPA 3H1JE 1SQPE 2GBXA 1G8JB 3GL0A 1FQTA 3N0QA 4HM1A 1G8KB 4NBGD 3CX5E 3VMID 1BCCE 1UUVA 4NBHD 3H1HE 4NBFD 1SQBE 2XRXA 1PP9E 2XR8A 5BOKA 2E4PA 4OGQD 4U3FE 3GOBA 4P1CH 4HM2A 3TGUE 2A06E 1L0LE 2YFLA 1EG9A 3L74E 3C0DA 4NB8D 2JZAA 4QDCA 3VMHD 5KKZC 1SQVE 4QDFB 1O7GA 3D89A 4AAYB 1SQQE 2BMQA 3H1KE 3L71E 1KYOE 4HM8A 5KLVE 4QUPA 3GB4A 4H44D 1SQXE 1KB9E 1O7NA 4HJLA 3CWBE 2JO6A 3L70E 2FYNC 2QJPC 3EN1A 3EQQA 3H1LE 1O7WA 5AEWA 2QPZA 1P84E 2E76D 3VCAA 1ULIA 2YFIA 2ZT9D 4NBCD 4QDDA 2YVJB 1NTKE 3FOUA 1NU1E 2HMJA 3DQYA 4HM5A 5AEUA 2NUMA 1WQLA 1NTZE 4QDFA 1PPJE 2YFJA 2D2CD 1BE3E 1L0NE 2HMKA 2HMNA 4AIVA 4HM6A 3AZCA 4HM7A 2B24A 4P1BH 2CKFA 5KLIC 3GCEA 1NDOA 4NBDD 1O7PA 2NVFA 2NWFA 2GBWA 3CXHE 2IBZE 2BCCE 3GL2A 3GZYA 4EMJB 4QURA 1RFSA 1O7HA 2HMLA 2QJYC 2XSOA 2NUKA 3L75E 4QCKA 4NBED 2ZYLA
chains in the Genus database with same CATH topology
1EZVE 2FYUE 1O7MA 2YIUC 3L73E 3BCCE 3GTSA 1NYKA 1JM1A 2E75D 2B1XA 1ZRTE 2E74D 2I7FA 1VF5D 1UUWA 4PD4E 1Q90C 2DE5D 2DE6D 1NTME 3H1IE 2NVEA 1RIEA 2BMOA 5CXMA 2DE7D 4NBBD 1SJGA 2BMRA 4NB9D 4H0LD 2XSHA 4QUQA 4HM3A 4HKVA 4HM4A 2E4QA 3GZXA 4PV1D 1ULJA 4HM0A 3GTEA 3VMGD 2NVGA 1VM9A 3GKEA 1VCKA 4H13D 4NBAD 2HMOA 2HMMA 2Q3WA 2QJKC 5HL4A 3L72E 3VCPA 3H1JE 1SQPE 2GBXA 1G8JB 3GL0A 1FQTA 3N0QA 4HM1A 1G8KB 4NBGD 3CX5E 3VMID 1BCCE 1UUVA 4NBHD 3H1HE 4NBFD 1SQBE 2XRXA 1PP9E 2XR8A 5BOKA 2E4PA 4OGQD 4U3FE 3GOBA 4P1CH 4HM2A 3TGUE 2A06E 1L0LE 2YFLA 1EG9A 3L74E 3C0DA 4NB8D 2JZAA 4QDCA 3VMHD 5KKZC 1SQVE 4QDFB 1O7GA 3D89A 4AAYB 1SQQE 2BMQA 3H1KE 3L71E 1KYOE 4HM8A 5KLVE 4QUPA 3GB4A 4H44D 1SQXE 1KB9E 1O7NA 4HJLA 3CWBE 2JO6A 3L70E 2FYNC 2QJPC 3EN1A 3EQQA 3H1LE 1O7WA 5AEWA 2QPZA 1P84E 2E76D 3VCAA 1ULIA 2YFIA 2ZT9D 4NBCD 4QDDA 2YVJB 1NTKE 3FOUA 1NU1E 2HMJA 3DQYA 4HM5A 5AEUA 2NUMA 1WQLA 1NTZE 4QDFA 1PPJE 2YFJA 2D2CD 1BE3E 1L0NE 2HMKA 2HMNA 4AIVA 4HM6A 3AZCA 4HM7A 2B24A 4P1BH 2CKFA 5KLIC 3GCEA 1NDOA 4NBDD 1O7PA 2NVFA 2NWFA 2GBWA 3CXHE 2IBZE 2BCCE 3GL2A 3GZYA 4EMJB 4QURA 1RFSA 1O7HA 2HMLA 2QJYC 2XSOA 2NUKA 3L75E 4QCKA 4NBED 2ZYLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EZV E;  2FYU E;  1O7M A;  2YIU C;  3L73 E;  3BCC E;  3GTS A;  1NYK A;  1JM1 A;  2E75 D;  2B1X A;  1ZRT E;  2E74 D;  2I7F A;  1VF5 D;  1UUW A;  4PD4 E;  1Q90 C;  2DE5 D;  2DE6 D;  1NTM E;  3H1I E;  2NVE A;  1RIE A;  2BMO A;  5CXM A;  2DE7 D;  4NBB D;  1SJG A;  2BMR A;  4NB9 D;  4H0L D;  2XSH A;  4QUQ A;  4HM3 A;  4HKV A;  4HM4 A;  2E4Q A;  3GZX A;  4PV1 D;  1ULJ A;  4HM0 A;  3GTE A;  3VMG D;  2NVG A;  1VM9 A;  3GKE A;  1VCK A;  4H13 D;  4NBA D;  2HMO A;  2HMM A;  2Q3W A;  2QJK C;  5HL4 A;  3L72 E;  3VCP A;  3H1J E;  1SQP E;  2GBX A;  1G8J B;  3GL0 A;  1FQT A;  3N0Q A;  4HM1 A;  1G8K B;  4NBG D;  3CX5 E;  3VMI D;  1BCC E;  1UUV A;  4NBH D;  3H1H E;  4NBF D;  1SQB E;  2XRX A;  1PP9 E;  2XR8 A;  5BOK A;  2E4P A;  4OGQ D;  4U3F E;  3GOB A;  4P1C H;  4HM2 A;  3TGU E;  2A06 E;  1L0L E;  2YFL A;  1EG9 A;  3L74 E;  3C0D A;  4NB8 D;  2JZA A;  4QDC A;  3VMH D;  5KKZ C;  1SQV E;  4QDF B;  1O7G A;  3D89 A;  4AAY B;  1SQQ E;  2BMQ A;  3H1K E;  3L71 E;  1KYO E;  4HM8 A;  5KLV E;  4QUP A;  3GB4 A;  4H44 D;  1SQX E;  1KB9 E;  1O7N A;  4HJL A;  3CWB E;  2JO6 A;  3L70 E;  2FYN C;  2QJP C;  3EN1 A;  3EQQ A;  3H1L E;  1O7W A;  5AEW A;  2QPZ A;  1P84 E;  2E76 D;  3VCA A;  1ULI A;  2YFI A;  2ZT9 D;  4NBC D;  4QDD A;  2YVJ B;  1NTK E;  3FOU A;  1NU1 E;  2HMJ A;  3DQY A;  4HM5 A;  5AEU A;  2NUM A;  1WQL A;  1NTZ E;  4QDF A;  1PPJ E;  2YFJ A;  2D2C D;  1BE3 E;  1L0N E;  2HMK A;  2HMN A;  4AIV A;  4HM6 A;  3AZC A;  4HM7 A;  2B24 A;  4P1B H;  2CKF A;  5KLI C;  3GCE A;  1NDO A;  4NBD D;  1O7P A;  2NVF A;  2NWF A;  2GBW A;  3CXH E;  2IBZ E;  2BCC E;  3GL2 A;  3GZY A;  4EMJ B;  4QUR A;  1RFS A;  1O7H A;  2HML A;  2QJY C;  2XSO A;  2NUK A;  3L75 E;  4QCK A;  4NBE D;  2ZYL A; 
#chains in the Genus database with same CATH topology
 1EZV E;  2FYU E;  1O7M A;  2YIU C;  3L73 E;  3BCC E;  3GTS A;  1NYK A;  1JM1 A;  2E75 D;  2B1X A;  1ZRT E;  2E74 D;  2I7F A;  1VF5 D;  1UUW A;  4PD4 E;  1Q90 C;  2DE5 D;  2DE6 D;  1NTM E;  3H1I E;  2NVE A;  1RIE A;  2BMO A;  5CXM A;  2DE7 D;  4NBB D;  1SJG A;  2BMR A;  4NB9 D;  4H0L D;  2XSH A;  4QUQ A;  4HM3 A;  4HKV A;  4HM4 A;  2E4Q A;  3GZX A;  4PV1 D;  1ULJ A;  4HM0 A;  3GTE A;  3VMG D;  2NVG A;  1VM9 A;  3GKE A;  1VCK A;  4H13 D;  4NBA D;  2HMO A;  2HMM A;  2Q3W A;  2QJK C;  5HL4 A;  3L72 E;  3VCP A;  3H1J E;  1SQP E;  2GBX A;  1G8J B;  3GL0 A;  1FQT A;  3N0Q A;  4HM1 A;  1G8K B;  4NBG D;  3CX5 E;  3VMI D;  1BCC E;  1UUV A;  4NBH D;  3H1H E;  4NBF D;  1SQB E;  2XRX A;  1PP9 E;  2XR8 A;  5BOK A;  2E4P A;  4OGQ D;  4U3F E;  3GOB A;  4P1C H;  4HM2 A;  3TGU E;  2A06 E;  1L0L E;  2YFL A;  1EG9 A;  3L74 E;  3C0D A;  4NB8 D;  2JZA A;  4QDC A;  3VMH D;  5KKZ C;  1SQV E;  4QDF B;  1O7G A;  3D89 A;  4AAY B;  1SQQ E;  2BMQ A;  3H1K E;  3L71 E;  1KYO E;  4HM8 A;  5KLV E;  4QUP A;  3GB4 A;  4H44 D;  1SQX E;  1KB9 E;  1O7N A;  4HJL A;  3CWB E;  2JO6 A;  3L70 E;  2FYN C;  2QJP C;  3EN1 A;  3EQQ A;  3H1L E;  1O7W A;  5AEW A;  2QPZ A;  1P84 E;  2E76 D;  3VCA A;  1ULI A;  2YFI A;  2ZT9 D;  4NBC D;  4QDD A;  2YVJ B;  1NTK E;  3FOU A;  1NU1 E;  2HMJ A;  3DQY A;  4HM5 A;  5AEU A;  2NUM A;  1WQL A;  1NTZ E;  4QDF A;  1PPJ E;  2YFJ A;  2D2C D;  1BE3 E;  1L0N E;  2HMK A;  2HMN A;  4AIV A;  4HM6 A;  3AZC A;  4HM7 A;  2B24 A;  4P1B H;  2CKF A;  5KLI C;  3GCE A;  1NDO A;  4NBD D;  1O7P A;  2NVF A;  2NWF A;  2GBW A;  3CXH E;  2IBZ E;  2BCC E;  3GL2 A;  3GZY A;  4EMJ B;  4QUR A;  1RFS A;  1O7H A;  2HML A;  2QJY C;  2XSO A;  2NUK A;  3L75 E;  4QCK A;  4NBE D;  2ZYL A; 
#chains in the Genus database with same CATH homology
 1EZV E;  2FYU E;  1O7M A;  2YIU C;  3L73 E;  3BCC E;  3GTS A;  1NYK A;  1JM1 A;  2E75 D;  2B1X A;  1ZRT E;  2E74 D;  2I7F A;  1VF5 D;  1UUW A;  4PD4 E;  1Q90 C;  2DE5 D;  2DE6 D;  1NTM E;  3H1I E;  2NVE A;  1RIE A;  2BMO A;  5CXM A;  2DE7 D;  4NBB D;  1SJG A;  2BMR A;  4NB9 D;  4H0L D;  2XSH A;  4QUQ A;  4HM3 A;  4HKV A;  4HM4 A;  2E4Q A;  3GZX A;  4PV1 D;  1ULJ A;  4HM0 A;  3GTE A;  3VMG D;  2NVG A;  1VM9 A;  3GKE A;  1VCK A;  4H13 D;  4NBA D;  2HMO A;  2HMM A;  2Q3W A;  2QJK C;  5HL4 A;  3L72 E;  3VCP A;  3H1J E;  1SQP E;  2GBX A;  1G8J B;  3GL0 A;  1FQT A;  3N0Q A;  4HM1 A;  1G8K B;  4NBG D;  3CX5 E;  3VMI D;  1BCC E;  1UUV A;  4NBH D;  3H1H E;  4NBF D;  1SQB E;  2XRX A;  1PP9 E;  2XR8 A;  5BOK A;  2E4P A;  4OGQ D;  4U3F E;  3GOB A;  4P1C H;  4HM2 A;  3TGU E;  2A06 E;  1L0L E;  2YFL A;  1EG9 A;  3L74 E;  3C0D A;  4NB8 D;  2JZA A;  4QDC A;  3VMH D;  5KKZ C;  1SQV E;  4QDF B;  1O7G A;  3D89 A;  4AAY B;  1SQQ E;  2BMQ A;  3H1K E;  3L71 E;  1KYO E;  4HM8 A;  5KLV E;  4QUP A;  3GB4 A;  4H44 D;  1SQX E;  1KB9 E;  1O7N A;  4HJL A;  3CWB E;  2JO6 A;  3L70 E;  2FYN C;  2QJP C;  3EN1 A;  3EQQ A;  3H1L E;  1O7W A;  5AEW A;  2QPZ A;  1P84 E;  2E76 D;  3VCA A;  1ULI A;  2YFI A;  2ZT9 D;  4NBC D;  4QDD A;  2YVJ B;  1NTK E;  3FOU A;  1NU1 E;  2HMJ A;  3DQY A;  4HM5 A;  5AEU A;  2NUM A;  1WQL A;  1NTZ E;  4QDF A;  1PPJ E;  2YFJ A;  2D2C D;  1BE3 E;  1L0N E;  2HMK A;  2HMN A;  4AIV A;  4HM6 A;  3AZC A;  4HM7 A;  2B24 A;  4P1B H;  2CKF A;  5KLI C;  3GCE A;  1NDO A;  4NBD D;  1O7P A;  2NVF A;  2NWF A;  2GBW A;  3CXH E;  2IBZ E;  2BCC E;  3GL2 A;  3GZY A;  4EMJ B;  4QUR A;  1RFS A;  1O7H A;  2HML A;  2QJY C;  2XSO A;  2NUK A;  3L75 E;  4QCK A;  4NBE D;  2ZYL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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