3VMHD

Oxygen-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
publication title Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase
pubmed doi rcsb
source organism Janthinobacterium
total genus 18
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2011-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3vmhD00
1EZVE 2NVEA 4HM6A 1SQQE 1VCKA 2HMLA 2QJPC 4NB8D 2E4PA 3D89A 4OGQD 4NB9D 1PPJE 1KYOE 1UUWA 3VMGD 1NDOA 1NTZE 4HJLA 3AZCA 2NUMA 1RFSA 1SJGA 4NBDD 5KLIC 4HM4A 4QDDA 4AIVA 1O7HA 4HM5A 3N0QA 3GTEA 3TGUE 1RIEA 4HM2A 3EQQA 4HKVA 1O7MA 3GZXA 2XSHA 3GB4A 5BOKA 3VCAA 1PP9E 2FYUE 4NBCD 4HM8A 1P84E 1ZRTE 1ULIA 2A06E 2JZAA 5KKZC 5AEWA 4HM1A 3VCPA 4QURA 3CWBE 4U3FE 2E74D 2B1XA 1G8JB 1NU1E 3EN1A 3L74E 4QDCA 2QJYC 3VMID 3L73E 2DE6D 2NVGA 1VF5D 3H1JE 4NBFD 1EG9A 1O7GA 1KB9E 5KLVE 2B24A 2YFJA 1BCCE 2ZT9D 3L71E 3H1LE 2I7FA 2HMNA 2HMJA 2QPZA 3FOUA 4QDFA 4P1BH 2ZYLA 3GOBA 4H0LD 3VMHD 2BMQA 3GL2A 4EMJB 3GKEA 4H44D 2BCCE 2HMKA 1NTME 2DE5D 4NBAD 1G8KB 1ULJA 2YVJB 4H13D 3GZYA 1JM1A 4NBBD 2NWFA 3GCEA 2CKFA 3CX5E 5AEUA 2QJKC 2YIUC 2YFIA 2YFLA 3C0DA 2NVFA 1NTKE 4HM3A 2FYNC 5CXMA 2HMMA 4AAYB 1O7NA 3L72E 4HM7A 1WQLA 2XSOA 2E76D 4NBGD 3CXHE 2IBZE 3GL0A 2JO6A 2D2CD 4NBED 2XRXA 3DQYA 1SQPE 2BMOA 2E4QA 3H1HE 3H1IE 1O7WA 3H1KE 4PD4E 3L75E 1SQXE 3GTSA 2XR8A 2HMOA 4PV1D 2BMRA 4QUQA 2DE7D 2E75D 5HL4A 2Q3WA 1UUVA 1NYKA 1SQBE 4QDFB 4QCKA 3BCCE 4NBHD 2GBWA 1VM9A 1SQVE 2NUKA 3L70E 4P1CH 1BE3E 2GBXA 1Q90C 1FQTA 1L0LE 1L0NE 4QUPA 4HM0A 1O7PA
chains in the Genus database with same CATH superfamily
1EZVE 2NVEA 4HM6A 1SQQE 1VCKA 2HMLA 2QJPC 4NB8D 2E4PA 3D89A 4OGQD 4NB9D 1PPJE 1KYOE 1UUWA 3VMGD 1NDOA 1NTZE 4HJLA 3AZCA 2NUMA 1RFSA 1SJGA 4NBDD 5KLIC 4HM4A 4QDDA 4AIVA 1O7HA 4HM5A 3N0QA 3GTEA 3TGUE 1RIEA 4HM2A 3EQQA 4HKVA 1O7MA 3GZXA 2XSHA 3GB4A 5BOKA 3VCAA 1PP9E 2FYUE 4NBCD 4HM8A 1P84E 1ZRTE 1ULIA 2A06E 2JZAA 5KKZC 5AEWA 4HM1A 3VCPA 4QURA 3CWBE 4U3FE 2E74D 2B1XA 1G8JB 1NU1E 3EN1A 3L74E 4QDCA 2QJYC 3VMID 3L73E 2DE6D 2NVGA 1VF5D 3H1JE 4NBFD 1EG9A 1O7GA 1KB9E 5KLVE 2B24A 2YFJA 1BCCE 2ZT9D 3L71E 3H1LE 2I7FA 2HMNA 2HMJA 2QPZA 3FOUA 4QDFA 4P1BH 2ZYLA 3GOBA 4H0LD 3VMHD 2BMQA 3GL2A 4EMJB 3GKEA 4H44D 2BCCE 2HMKA 1NTME 2DE5D 4NBAD 1G8KB 1ULJA 2YVJB 4H13D 3GZYA 1JM1A 4NBBD 2NWFA 3GCEA 2CKFA 3CX5E 5AEUA 2QJKC 2YIUC 2YFIA 2YFLA 3C0DA 2NVFA 1NTKE 4HM3A 2FYNC 5CXMA 2HMMA 4AAYB 1O7NA 3L72E 4HM7A 1WQLA 2XSOA 2E76D 4NBGD 3CXHE 2IBZE 3GL0A 2JO6A 2D2CD 4NBED 2XRXA 3DQYA 1SQPE 2BMOA 2E4QA 3H1HE 3H1IE 1O7WA 3H1KE 4PD4E 3L75E 1SQXE 3GTSA 2XR8A 2HMOA 4PV1D 2BMRA 4QUQA 2DE7D 2E75D 5HL4A 2Q3WA 1UUVA 1NYKA 1SQBE 4QDFB 4QCKA 3BCCE 4NBHD 2GBWA 1VM9A 1SQVE 2NUKA 3L70E 4P1CH 1BE3E 2GBXA 1Q90C 1FQTA 1L0LE 1L0NE 4QUPA 4HM0A 1O7PA
chains in the Genus database with same CATH topology
1EZVE 2NVEA 4HM6A 1SQQE 1VCKA 2HMLA 2QJPC 4NB8D 2E4PA 3D89A 4OGQD 4NB9D 1PPJE 1KYOE 1UUWA 3VMGD 1NDOA 1NTZE 4HJLA 3AZCA 2NUMA 1RFSA 1SJGA 4NBDD 5KLIC 4HM4A 4QDDA 4AIVA 1O7HA 4HM5A 3N0QA 3GTEA 3TGUE 1RIEA 4HM2A 3EQQA 4HKVA 1O7MA 3GZXA 2XSHA 3GB4A 5BOKA 3VCAA 1PP9E 2FYUE 4NBCD 4HM8A 1P84E 1ZRTE 1ULIA 2A06E 2JZAA 5KKZC 5AEWA 4HM1A 3VCPA 4QURA 3CWBE 4U3FE 2E74D 2B1XA 1G8JB 1NU1E 3EN1A 3L74E 4QDCA 2QJYC 3VMID 3L73E 2DE6D 2NVGA 1VF5D 3H1JE 4NBFD 1EG9A 1O7GA 1KB9E 5KLVE 2B24A 2YFJA 1BCCE 2ZT9D 3L71E 3H1LE 2I7FA 2HMNA 2HMJA 2QPZA 3FOUA 4QDFA 4P1BH 2ZYLA 3GOBA 4H0LD 3VMHD 2BMQA 3GL2A 4EMJB 3GKEA 4H44D 2BCCE 2HMKA 1NTME 2DE5D 4NBAD 1G8KB 1ULJA 2YVJB 4H13D 3GZYA 1JM1A 4NBBD 2NWFA 3GCEA 2CKFA 3CX5E 5AEUA 2QJKC 2YIUC 2YFIA 2YFLA 3C0DA 2NVFA 1NTKE 4HM3A 2FYNC 5CXMA 2HMMA 4AAYB 1O7NA 3L72E 4HM7A 1WQLA 2XSOA 2E76D 4NBGD 3CXHE 2IBZE 3GL0A 2JO6A 2D2CD 4NBED 2XRXA 3DQYA 1SQPE 2BMOA 2E4QA 3H1HE 3H1IE 1O7WA 3H1KE 4PD4E 3L75E 1SQXE 3GTSA 2XR8A 2HMOA 4PV1D 2BMRA 4QUQA 2DE7D 2E75D 5HL4A 2Q3WA 1UUVA 1NYKA 1SQBE 4QDFB 4QCKA 3BCCE 4NBHD 2GBWA 1VM9A 1SQVE 2NUKA 3L70E 4P1CH 1BE3E 2GBXA 1Q90C 1FQTA 1L0LE 1L0NE 4QUPA 4HM0A 1O7PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EZV E;  2NVE A;  4HM6 A;  1SQQ E;  1VCK A;  2HML A;  2QJP C;  4NB8 D;  2E4P A;  3D89 A;  4OGQ D;  4NB9 D;  1PPJ E;  1KYO E;  1UUW A;  3VMG D;  1NDO A;  1NTZ E;  4HJL A;  3AZC A;  2NUM A;  1RFS A;  1SJG A;  4NBD D;  5KLI C;  4HM4 A;  4QDD A;  4AIV A;  1O7H A;  4HM5 A;  3N0Q A;  3GTE A;  3TGU E;  1RIE A;  4HM2 A;  3EQQ A;  4HKV A;  1O7M A;  3GZX A;  2XSH A;  3GB4 A;  5BOK A;  3VCA A;  1PP9 E;  2FYU E;  4NBC D;  4HM8 A;  1P84 E;  1ZRT E;  1ULI A;  2A06 E;  2JZA A;  5KKZ C;  5AEW A;  4HM1 A;  3VCP A;  4QUR A;  3CWB E;  4U3F E;  2E74 D;  2B1X A;  1G8J B;  1NU1 E;  3EN1 A;  3L74 E;  4QDC A;  2QJY C;  3VMI D;  3L73 E;  2DE6 D;  2NVG A;  1VF5 D;  3H1J E;  4NBF D;  1EG9 A;  1O7G A;  1KB9 E;  5KLV E;  2B24 A;  2YFJ A;  1BCC E;  2ZT9 D;  3L71 E;  3H1L E;  2I7F A;  2HMN A;  2HMJ A;  2QPZ A;  3FOU A;  4QDF A;  4P1B H;  2ZYL A;  3GOB A;  4H0L D;  3VMH D;  2BMQ A;  3GL2 A;  4EMJ B;  3GKE A;  4H44 D;  2BCC E;  2HMK A;  1NTM E;  2DE5 D;  4NBA D;  1G8K B;  1ULJ A;  2YVJ B;  4H13 D;  3GZY A;  1JM1 A;  4NBB D;  2NWF A;  3GCE A;  2CKF A;  3CX5 E;  5AEU A;  2QJK C;  2YIU C;  2YFI A;  2YFL A;  3C0D A;  2NVF A;  1NTK E;  4HM3 A;  2FYN C;  5CXM A;  2HMM A;  4AAY B;  1O7N A;  3L72 E;  4HM7 A;  1WQL A;  2XSO A;  2E76 D;  4NBG D;  3CXH E;  2IBZ E;  3GL0 A;  2JO6 A;  2D2C D;  4NBE D;  2XRX A;  3DQY A;  1SQP E;  2BMO A;  2E4Q A;  3H1H E;  3H1I E;  1O7W A;  3H1K E;  4PD4 E;  3L75 E;  1SQX E;  3GTS A;  2XR8 A;  2HMO A;  4PV1 D;  2BMR A;  4QUQ A;  2DE7 D;  2E75 D;  5HL4 A;  2Q3W A;  1UUV A;  1NYK A;  1SQB E;  4QDF B;  4QCK A;  3BCC E;  4NBH D;  2GBW A;  1VM9 A;  1SQV E;  2NUK A;  3L70 E;  4P1C H;  1BE3 E;  2GBX A;  1Q90 C;  1FQT A;  1L0L E;  1L0N E;  4QUP A;  4HM0 A;  1O7P A; 
#chains in the Genus database with same CATH topology
 1EZV E;  2NVE A;  4HM6 A;  1SQQ E;  1VCK A;  2HML A;  2QJP C;  4NB8 D;  2E4P A;  3D89 A;  4OGQ D;  4NB9 D;  1PPJ E;  1KYO E;  1UUW A;  3VMG D;  1NDO A;  1NTZ E;  4HJL A;  3AZC A;  2NUM A;  1RFS A;  1SJG A;  4NBD D;  5KLI C;  4HM4 A;  4QDD A;  4AIV A;  1O7H A;  4HM5 A;  3N0Q A;  3GTE A;  3TGU E;  1RIE A;  4HM2 A;  3EQQ A;  4HKV A;  1O7M A;  3GZX A;  2XSH A;  3GB4 A;  5BOK A;  3VCA A;  1PP9 E;  2FYU E;  4NBC D;  4HM8 A;  1P84 E;  1ZRT E;  1ULI A;  2A06 E;  2JZA A;  5KKZ C;  5AEW A;  4HM1 A;  3VCP A;  4QUR A;  3CWB E;  4U3F E;  2E74 D;  2B1X A;  1G8J B;  1NU1 E;  3EN1 A;  3L74 E;  4QDC A;  2QJY C;  3VMI D;  3L73 E;  2DE6 D;  2NVG A;  1VF5 D;  3H1J E;  4NBF D;  1EG9 A;  1O7G A;  1KB9 E;  5KLV E;  2B24 A;  2YFJ A;  1BCC E;  2ZT9 D;  3L71 E;  3H1L E;  2I7F A;  2HMN A;  2HMJ A;  2QPZ A;  3FOU A;  4QDF A;  4P1B H;  2ZYL A;  3GOB A;  4H0L D;  3VMH D;  2BMQ A;  3GL2 A;  4EMJ B;  3GKE A;  4H44 D;  2BCC E;  2HMK A;  1NTM E;  2DE5 D;  4NBA D;  1G8K B;  1ULJ A;  2YVJ B;  4H13 D;  3GZY A;  1JM1 A;  4NBB D;  2NWF A;  3GCE A;  2CKF A;  3CX5 E;  5AEU A;  2QJK C;  2YIU C;  2YFI A;  2YFL A;  3C0D A;  2NVF A;  1NTK E;  4HM3 A;  2FYN C;  5CXM A;  2HMM A;  4AAY B;  1O7N A;  3L72 E;  4HM7 A;  1WQL A;  2XSO A;  2E76 D;  4NBG D;  3CXH E;  2IBZ E;  3GL0 A;  2JO6 A;  2D2C D;  4NBE D;  2XRX A;  3DQY A;  1SQP E;  2BMO A;  2E4Q A;  3H1H E;  3H1I E;  1O7W A;  3H1K E;  4PD4 E;  3L75 E;  1SQX E;  3GTS A;  2XR8 A;  2HMO A;  4PV1 D;  2BMR A;  4QUQ A;  2DE7 D;  2E75 D;  5HL4 A;  2Q3W A;  1UUV A;  1NYK A;  1SQB E;  4QDF B;  4QCK A;  3BCC E;  4NBH D;  2GBW A;  1VM9 A;  1SQV E;  2NUK A;  3L70 E;  4P1C H;  1BE3 E;  2GBX A;  1Q90 C;  1FQT A;  1L0L E;  1L0N E;  4QUP A;  4HM0 A;  1O7P A; 
#chains in the Genus database with same CATH homology
 1EZV E;  2NVE A;  4HM6 A;  1SQQ E;  1VCK A;  2HML A;  2QJP C;  4NB8 D;  2E4P A;  3D89 A;  4OGQ D;  4NB9 D;  1PPJ E;  1KYO E;  1UUW A;  3VMG D;  1NDO A;  1NTZ E;  4HJL A;  3AZC A;  2NUM A;  1RFS A;  1SJG A;  4NBD D;  5KLI C;  4HM4 A;  4QDD A;  4AIV A;  1O7H A;  4HM5 A;  3N0Q A;  3GTE A;  3TGU E;  1RIE A;  4HM2 A;  3EQQ A;  4HKV A;  1O7M A;  3GZX A;  2XSH A;  3GB4 A;  5BOK A;  3VCA A;  1PP9 E;  2FYU E;  4NBC D;  4HM8 A;  1P84 E;  1ZRT E;  1ULI A;  2A06 E;  2JZA A;  5KKZ C;  5AEW A;  4HM1 A;  3VCP A;  4QUR A;  3CWB E;  4U3F E;  2E74 D;  2B1X A;  1G8J B;  1NU1 E;  3EN1 A;  3L74 E;  4QDC A;  2QJY C;  3VMI D;  3L73 E;  2DE6 D;  2NVG A;  1VF5 D;  3H1J E;  4NBF D;  1EG9 A;  1O7G A;  1KB9 E;  5KLV E;  2B24 A;  2YFJ A;  1BCC E;  2ZT9 D;  3L71 E;  3H1L E;  2I7F A;  2HMN A;  2HMJ A;  2QPZ A;  3FOU A;  4QDF A;  4P1B H;  2ZYL A;  3GOB A;  4H0L D;  3VMH D;  2BMQ A;  3GL2 A;  4EMJ B;  3GKE A;  4H44 D;  2BCC E;  2HMK A;  1NTM E;  2DE5 D;  4NBA D;  1G8K B;  1ULJ A;  2YVJ B;  4H13 D;  3GZY A;  1JM1 A;  4NBB D;  2NWF A;  3GCE A;  2CKF A;  3CX5 E;  5AEU A;  2QJK C;  2YIU C;  2YFI A;  2YFL A;  3C0D A;  2NVF A;  1NTK E;  4HM3 A;  2FYN C;  5CXM A;  2HMM A;  4AAY B;  1O7N A;  3L72 E;  4HM7 A;  1WQL A;  2XSO A;  2E76 D;  4NBG D;  3CXH E;  2IBZ E;  3GL0 A;  2JO6 A;  2D2C D;  4NBE D;  2XRX A;  3DQY A;  1SQP E;  2BMO A;  2E4Q A;  3H1H E;  3H1I E;  1O7W A;  3H1K E;  4PD4 E;  3L75 E;  1SQX E;  3GTS A;  2XR8 A;  2HMO A;  4PV1 D;  2BMR A;  4QUQ A;  2DE7 D;  2E75 D;  5HL4 A;  2Q3W A;  1UUV A;  1NYK A;  1SQB E;  4QDF B;  4QCK A;  3BCC E;  4NBH D;  2GBW A;  1VM9 A;  1SQV E;  2NUK A;  3L70 E;  4P1C H;  1BE3 E;  2GBX A;  1Q90 C;  1FQT A;  1L0L E;  1L0N E;  4QUP A;  4HM0 A;  1O7P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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