3VMSA

Crystal structure of staphylococcus aureus membrane-bound transglycosylase in complex with nbd-lipid ii
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
227
structure length
220
Chain Sequence
LLKILLTILIIIALFIGIMYFLSTRDNVDELRKIENKSSFVSADNMPEYVKGAFISMEDERFYNHHGFDLKGTTRALFSTGGSTITQQVVKNYFYDNDRSFTRKVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNSTTMSHITVLQSAILASKVNAPSVYNINNMSENFTQRVSTNLEKMKQQNYINETQYQQAMSQLNR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Monofunctional glycosyltransferase
publication title Crystal structure of Staphylococcus aureus transglycosylase in complex with a lipid II analog and elucidation of peptidoglycan synthesis mechanism
pubmed doi rcsb
source organism Staphylococcus aureus
total genus 72
structure length 220
sequence length 227
chains with identical sequence B
ec nomenclature ec 2.4.1.129: Peptidoglycan glycosyltransferase.
pdb deposition date 2011-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00912 Transgly Transglycosylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3810.10 Mainly Alpha Orthogonal Bundle Penicillin binding protein transpeptidase fold Biosynthetic peptidoglycan transglycosylase-like 3vmsA00
2OQOA 3FWLA 3VMSA 3D3HA 3VMRA 3VMQA 3NB6A 3VMAA 3ZG7B 3NB7A 3VMTA 3DWKA 2OLUA 2OLVA 3HZSA
chains in the Genus database with same CATH superfamily
2OQOA 3FWLA 3VMSA 3D3HA 3VMRA 3VMQA 3NB6A 3VMAA 3ZG7B 3NB7A 3VMTA 3DWKA 2OLUA 2OLVA 3HZSA
chains in the Genus database with same CATH topology
2OQOA 3FWLA 3VMSA 3D3HA 3VMRA 3VMQA 3NB6A 3VMAA 3ZG7B 3NB7A 3VMTA 3DWKA 2OLUA 2OLVA 3HZSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OQO A;  3FWL A;  3VMS A;  3D3H A;  3VMR A;  3VMQ A;  3NB6 A;  3VMA A;  3ZG7 B;  3NB7 A;  3VMT A;  3DWK A;  2OLU A;  2OLV A;  3HZS A; 
#chains in the Genus database with same CATH topology
 2OQO A;  3FWL A;  3VMS A;  3D3H A;  3VMR A;  3VMQ A;  3NB6 A;  3VMA A;  3ZG7 B;  3NB7 A;  3VMT A;  3DWK A;  2OLU A;  2OLV A;  3HZS A; 
#chains in the Genus database with same CATH homology
 2OQO A;  3FWL A;  3VMS A;  3D3H A;  3VMR A;  3VMQ A;  3NB6 A;  3VMA A;  3ZG7 B;  3NB7 A;  3VMT A;  3DWK A;  2OLU A;  2OLV A;  3HZS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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