3VR8D

Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode ascaris suum
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
129
structure length
129
Chain Sequence
TSAAVTGAAPPQFDPIAAEKGFKPLHSHGTLFKIERYFAAAMVPLIPAAYFIHGREMDLCLALALTLHVHWGVWGVVNDYGRPFVLGDTLAAAVRVGAYIFTACLLAGLLYFNEHDVGLTRAFEMVWEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
publication title Crystal structure of mitochondrial quinol-fumarate reductase from the parasitic nematode Ascaris suum
pubmed doi rcsb
molecule keywords Flavoprotein subunit of complex II
total genus 34
structure length 129
sequence length 129
chains with identical sequence H
ec nomenclature
pdb deposition date 2012-04-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF05328 CybS CybS, succinate dehydrogenase cytochrome B small subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3vr8D00
1YQ3D 3VRBC 3CIRC 1YQ4D 2H88C 3VR8C 2WP9C 3AE9D 2H89D 3SFDD 3AE4C 2WDVD 1NEKD 3AE3D 3P4QC 3AE1D 1NEND 4KX6D 3AEDD 2BS3C 2WDRD 3AE7D 4YTMC 1L0VD 4YTPD 2WS3C 1ZOYC 3AE6D 4YSZD 3AE5D 4YSYC 2B76D 3SFED 3VR9D 2WQYD 3P4RD 3AE9C 2H89C 3SFDC 2WDVC 4YTNC 1NEKC 3VRAD 1ZP0D 3AEAC 3AE3C 3AE1C 1NENC 4KX6C 3ABVC 4YSXD 3AEDC 1KF6D 3AEFD 1KFYC 3P4PD 2WDRC 3AE8D 3AE7C 1L0VC 4YTPC 2WDQD 4YXDC 3VRBD 3CIRD 3AE6C 2WU5D 4YSZC 3AE5C 1YQ3C 4YT0D 3VR8D 2B76C 3VR9C 2WQYC 1QLBC 2WU2D 1YQ4C 3AE4D 3P4RC 2FBWD 5C2TD 3AE2D 2BS4C 3P4SD 3VRAC 1ZP0C 2ACZD 3AEGD 4YSXC 1KF6C 3P4PC 2WS3D 3AE8C 2BS2C 3AEBD 2WDQC 3AEED 3AECD 5C3JD 2WU5C 2H88D 4YT0C 3SFEC 1E7PC 2WP9D 2WU2C 4YTND 2FBWC 5C2TC 3AEAD 3P4QD 3AE2C 3ABVD 3P4SC 1KFYD 2ACZC 3AEGC 4YTMD 3AEFC 4YXDD 1ZOYD 3AEBC 3AEEC 3AECC 4YSYD 5C3JC
chains in the Genus database with same CATH superfamily
1YQ3D 3VRBC 3CIRC 1YQ4D 2H88C 3VR8C 2WP9C 3AE9D 2H89D 3SFDD 3AE4C 2WDVD 1NEKD 3AE3D 4DDGA 3P4QC 3AE1D 4DHJA 1NEND 4KX6D 3AEDD 2BS3C 2WDRD 3AE7D 4YTMC 1L0VD 4YTPD 2WS3C 1ZOYC 3AE6D 4YSZD 3AE5D 4YSYC 2B76D 3SFED 3VR9D 2WQYD 3P4RD 4LDTA 2ZFYA 3AE9C 2H89C 3SFDC 2WDVC 4DDIA 4YTNC 1NEKC 3VRAD 1ZP0D 3AEAC 3AE3C 3VONA 3AE1C 1NENC 4KX6C 3ABVC 4YSXD 3AEDC 1KF6D 3AEFD 1KFYC 3P4PD 2WDRC 3AE8D 3AE7C 1L0VC 4YTPC 2WDQD 4YXDC 3VRBD 3CIRD 3AE6C 2WU5D 4YSZC 3AE5C 4I6LA 1YQ3C 4YT0D 3VR8D 2B76C 3VR9C 2WQYC 1QLBC 1TFFA 2WU2D 1YQ4C 3AE4D 3P4RC 4DHZA 2FBWD 5C2TD 3AE2D 2BS4C 3P4SD 3VRAC 1ZP0C 2ACZD 3AEGD 4YSXC 1KF6C 3P4PC 2WS3D 3AE8C 2BS2C 3AEBD 2WDQC 3AEED 3AECD 5C3JD 2WU5C 2H88D 4YT0C 3SFEC 1E7PC 2WP9D 4FJVA 2WU2C 4YTND 2FBWC 5C2TC 3AEAD 3P4QD 3AE2C 3ABVD 3P4SC 1KFYD 2ACZC 3AEGC 4YTMD 3AEFC 4YXDD 1ZOYD 3AEBC 4DHIB 3AEEC 3AECC 4YSYD 5C3JC
chains in the Genus database with same CATH topology
1YQ3D 3VRBC 3CIRC 1YQ4D 2H88C 3VR8C 2WP9C 3AE9D 2H89D 3SFDD 3AE4C 2WDVD 1NEKD 3AE3D 3P4QC 3AE1D 1NEND 4KX6D 3AEDD 2BS3C 2WDRD 3AE7D 4YTMC 1L0VD 4YTPD 2WS3C 1ZOYC 3AE6D 4YSZD 3AE5D 4YSYC 2B76D 3SFED 3VR9D 2WQYD 3P4RD 3AE9C 2H89C 3SFDC 2WDVC 4YTNC 1NEKC 3VRAD 1ZP0D 3AEAC 3AE3C 3AE1C 1NENC 4KX6C 3ABVC 4YSXD 3AEDC 1KF6D 3AEFD 1KFYC 3P4PD 2WDRC 3AE8D 3AE7C 1L0VC 4YTPC 2WDQD 4YXDC 3VRBD 3CIRD 3AE6C 2WU5D 4YSZC 3AE5C 1YQ3C 4YT0D 3VR8D 2B76C 3VR9C 2WQYC 1QLBC 2WU2D 1YQ4C 3AE4D 3P4RC 2FBWD 5C2TD 3AE2D 2BS4C 3P4SD 3VRAC 1ZP0C 2ACZD 3AEGD 4YSXC 1KF6C 3P4PC 2WS3D 3AE8C 2BS2C 3AEBD 2WDQC 3AEED 3AECD 5C3JD 2WU5C 2H88D 4YT0C 3SFEC 1E7PC 2WP9D 2WU2C 4YTND 2FBWC 5C2TC 3AEAD 3P4QD 3AE2C 3ABVD 3P4SC 1KFYD 2ACZC 3AEGC 4YTMD 3AEFC 4YXDD 1ZOYD 3AEBC 3AEEC 3AECC 4YSYD 5C3JC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YQ3 D;  3VRB C;  3CIR C;  1YQ4 D;  2H88 C;  3VR8 C;  2WP9 C;  3AE9 D;  2H89 D;  3SFD D;  3AE4 C;  2WDV D;  1NEK D;  3AE3 D;  3P4Q C;  3AE1 D;  1NEN D;  4KX6 D;  3AED D;  2BS3 C;  2WDR D;  3AE7 D;  4YTM C;  1L0V D;  4YTP D;  2WS3 C;  1ZOY C;  3AE6 D;  4YSZ D;  3AE5 D;  4YSY C;  2B76 D;  3SFE D;  3VR9 D;  2WQY D;  3P4R D;  3AE9 C;  2H89 C;  3SFD C;  2WDV C;  4YTN C;  1NEK C;  3VRA D;  1ZP0 D;  3AEA C;  3AE3 C;  3AE1 C;  1NEN C;  4KX6 C;  3ABV C;  4YSX D;  3AED C;  1KF6 D;  3AEF D;  1KFY C;  3P4P D;  2WDR C;  3AE8 D;  3AE7 C;  1L0V C;  4YTP C;  2WDQ D;  4YXD C;  3VRB D;  3CIR D;  3AE6 C;  2WU5 D;  4YSZ C;  3AE5 C;  1YQ3 C;  4YT0 D;  3VR8 D;  2B76 C;  3VR9 C;  2WQY C;  1QLB C;  2WU2 D;  1YQ4 C;  3AE4 D;  3P4R C;  2FBW D;  5C2T D;  3AE2 D;  2BS4 C;  3P4S D;  3VRA C;  1ZP0 C;  2ACZ D;  3AEG D;  4YSX C;  1KF6 C;  3P4P C;  2WS3 D;  3AE8 C;  2BS2 C;  3AEB D;  2WDQ C;  3AEE D;  3AEC D;  5C3J D;  2WU5 C;  2H88 D;  4YT0 C;  3SFE C;  1E7P C;  2WP9 D;  2WU2 C;  4YTN D;  2FBW C;  5C2T C;  3AEA D;  3P4Q D;  3AE2 C;  3ABV D;  3P4S C;  1KFY D;  2ACZ C;  3AEG C;  4YTM D;  3AEF C;  4YXD D;  1ZOY D;  3AEB C;  3AEE C;  3AEC C;  4YSY D;  5C3J C; 
#chains in the Genus database with same CATH topology
 1YQ3 D;  3VRB C;  3CIR C;  1YQ4 D;  2H88 C;  3VR8 C;  2WP9 C;  3AE9 D;  2H89 D;  3SFD D;  3AE4 C;  2WDV D;  1NEK D;  3AE3 D;  4DDG A;  3P4Q C;  3AE1 D;  4DHJ A;  1NEN D;  4KX6 D;  3AED D;  2BS3 C;  2WDR D;  3AE7 D;  4YTM C;  1L0V D;  4YTP D;  2WS3 C;  1ZOY C;  3AE6 D;  4YSZ D;  3AE5 D;  4YSY C;  2B76 D;  3SFE D;  3VR9 D;  2WQY D;  3P4R D;  4LDT A;  2ZFY A;  3AE9 C;  2H89 C;  3SFD C;  2WDV C;  4DDI A;  4YTN C;  1NEK C;  3VRA D;  1ZP0 D;  3AEA C;  3AE3 C;  3VON A;  3AE1 C;  1NEN C;  4KX6 C;  3ABV C;  4YSX D;  3AED C;  1KF6 D;  3AEF D;  1KFY C;  3P4P D;  2WDR C;  3AE8 D;  3AE7 C;  1L0V C;  4YTP C;  2WDQ D;  4YXD C;  3VRB D;  3CIR D;  3AE6 C;  2WU5 D;  4YSZ C;  3AE5 C;  4I6L A;  1YQ3 C;  4YT0 D;  3VR8 D;  2B76 C;  3VR9 C;  2WQY C;  1QLB C;  1TFF A;  2WU2 D;  1YQ4 C;  3AE4 D;  3P4R C;  4DHZ A;  2FBW D;  5C2T D;  3AE2 D;  2BS4 C;  3P4S D;  3VRA C;  1ZP0 C;  2ACZ D;  3AEG D;  4YSX C;  1KF6 C;  3P4P C;  2WS3 D;  3AE8 C;  2BS2 C;  3AEB D;  2WDQ C;  3AEE D;  3AEC D;  5C3J D;  2WU5 C;  2H88 D;  4YT0 C;  3SFE C;  1E7P C;  2WP9 D;  4FJV A;  2WU2 C;  4YTN D;  2FBW C;  5C2T C;  3AEA D;  3P4Q D;  3AE2 C;  3ABV D;  3P4S C;  1KFY D;  2ACZ C;  3AEG C;  4YTM D;  3AEF C;  4YXD D;  1ZOY D;  3AEB C;  4DHI B;  3AEE C;  3AEC C;  4YSY D;  5C3J C; 
#chains in the Genus database with same CATH homology
 1YQ3 D;  3VRB C;  3CIR C;  1YQ4 D;  2H88 C;  3VR8 C;  2WP9 C;  3AE9 D;  2H89 D;  3SFD D;  3AE4 C;  2WDV D;  1NEK D;  3AE3 D;  3P4Q C;  3AE1 D;  1NEN D;  4KX6 D;  3AED D;  2BS3 C;  2WDR D;  3AE7 D;  4YTM C;  1L0V D;  4YTP D;  2WS3 C;  1ZOY C;  3AE6 D;  4YSZ D;  3AE5 D;  4YSY C;  2B76 D;  3SFE D;  3VR9 D;  2WQY D;  3P4R D;  3AE9 C;  2H89 C;  3SFD C;  2WDV C;  4YTN C;  1NEK C;  3VRA D;  1ZP0 D;  3AEA C;  3AE3 C;  3AE1 C;  1NEN C;  4KX6 C;  3ABV C;  4YSX D;  3AED C;  1KF6 D;  3AEF D;  1KFY C;  3P4P D;  2WDR C;  3AE8 D;  3AE7 C;  1L0V C;  4YTP C;  2WDQ D;  4YXD C;  3VRB D;  3CIR D;  3AE6 C;  2WU5 D;  4YSZ C;  3AE5 C;  1YQ3 C;  4YT0 D;  3VR8 D;  2B76 C;  3VR9 C;  2WQY C;  1QLB C;  2WU2 D;  1YQ4 C;  3AE4 D;  3P4R C;  2FBW D;  5C2T D;  3AE2 D;  2BS4 C;  3P4S D;  3VRA C;  1ZP0 C;  2ACZ D;  3AEG D;  4YSX C;  1KF6 C;  3P4P C;  2WS3 D;  3AE8 C;  2BS2 C;  3AEB D;  2WDQ C;  3AEE D;  3AEC D;  5C3J D;  2WU5 C;  2H88 D;  4YT0 C;  3SFE C;  1E7P C;  2WP9 D;  2WU2 C;  4YTN D;  2FBW C;  5C2T C;  3AEA D;  3P4Q D;  3AE2 C;  3ABV D;  3P4S C;  1KFY D;  2ACZ C;  3AEG C;  4YTM D;  3AEF C;  4YXD D;  1ZOY D;  3AEB C;  3AEE C;  3AEC C;  4YSY D;  5C3J C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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