3VR9C

Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode ascaris suum with the specific inhibitor flutolanil
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
153
structure length
153
Chain Sequence
EKTPIQVWGWDYLMRQRALKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEFIRGLGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKGTDIPSIYRGAYLVLGLAALISLAVVVYPRWERHKKATLPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Flavoprotein subunit of complex II
publication title Crystal structure of mitochondrial quinol-fumarate reductase from parasitic nematode Ascaris suum
rcsb
total genus 44
structure length 153
sequence length 153
chains with identical sequence G
ec nomenclature
pdb deposition date 2012-04-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3vr9C00
4YTPD 1YQ4C 1ZOYC 5C2TD 2B76C 1KF6D 3AE5D 2WDVD 2WDQC 2WS3C 3CIRD 3AE8C 3P4PD 4YTMC 2WQYD 3AE3D 2H89C 3AE7C 3VRAC 1L0VD 2WU2D 3AEBD 4YT0C 1NEKD 1NENC 1ZP0D 3AEAD 2BS2C 3AECC 3P4SC 3AEGC 2ACZD 3AEED 4YXDD 3P4QD 2FBWC 1E7PC 3SFDD 2WDRC 2BS3C 3SFED 1KFYC 3ABVD 3VR9C 4KX6D 2WU5D 1YQ3C 4YSZD 2H88C 4YTNC 3AE2D 3AE9D 3VRBD 3AE4C 4YSYD 4YSXC 5C3JC 3AE1C 3P4RD 3AEFC 2WP9C 3VR8C 3AE6D 3AEDD 4YTPC 1YQ4D 1ZOYD 5C2TC 2B76D 1KF6C 3AE5C 2WDVC 2WDQD 2WS3D 3CIRC 3AE8D 3P4PC 4YTMD 2WQYC 3AE3C 2H89D 3AE7D 3VRAD 1L0VC 2WU2C 3AEBC 4YT0D 1NEKC 1NEND 1ZP0C 3AEAC 3AECD 3P4SD 3AEGD 2ACZC 3AEEC 4YXDC 3P4QC 2FBWD 3SFDC 2WDRD 3SFEC 1KFYD 3ABVC 3VR9D 4KX6C 2BS4C 1QLBC 2WU5C 1YQ3D 4YSZC 2H88D 4YTND 3AE2C 3AE9C 3VRBC 3AE4D 4YSYC 4YSXD 5C3JD 3AE1D 3P4RC 3AEFD 2WP9D 3VR8D 3AE6C 3AEDC
chains in the Genus database with same CATH superfamily
2ZFYA 4YTPD 1YQ4C 1ZOYC 5C2TD 2B76C 1KF6D 3AE5D 2WDVD 2WDQC 2WS3C 3CIRD 3AE8C 4DHJA 3P4PD 4YTMC 2WQYD 3AE3D 2H89C 4I6LA 3AE7C 3VRAC 1L0VD 2WU2D 3AEBD 4YT0C 1NEKD 1NENC 1ZP0D 3AEAD 2BS2C 3AECC 3P4SC 3AEGC 4LDTA 2ACZD 3AEED 4YXDD 3P4QD 2FBWC 4DDIA 1E7PC 3SFDD 2WDRC 2BS3C 3SFED 1TFFA 1KFYC 3ABVD 3VR9C 4KX6D 2WU5D 1YQ3C 4YSZD 2H88C 4YTNC 3AE2D 3AE9D 3VRBD 4DDGA 3AE4C 4YSYD 4YSXC 4DHZA 3AE1C 5C3JC 3P4RD 3AEFC 2WP9C 3VR8C 3AE6D 3AEDD 4YTPC 1YQ4D 1ZOYD 5C2TC 2B76D 1KF6C 3AE5C 2WDVC 2WDQD 2WS3D 3CIRC 3AE8D 3P4PC 4YTMD 2WQYC 3AE3C 2H89D 3AE7D 3VRAD 1L0VC 2WU2C 3AEBC 4YT0D 1NEKC 1NEND 1ZP0C 3AEAC 3AECD 3P4SD 3AEGD 2ACZC 3AEEC 4YXDC 3P4QC 2FBWD 3SFDC 2WDRD 3SFEC 1KFYD 3ABVC 3VR9D 4KX6C 3VONA 2BS4C 1QLBC 2WU5C 1YQ3D 4YSZC 2H88D 4YTND 3AE2C 3AE9C 3VRBC 4FJVA 3AE4D 4YSYC 4DHIB 4YSXD 5C3JD 3AE1D 3P4RC 3AEFD 2WP9D 3VR8D 3AE6C 3AEDC
chains in the Genus database with same CATH topology
4YTPD 1YQ4C 1ZOYC 5C2TD 2B76C 1KF6D 3AE5D 2WDVD 2WDQC 2WS3C 3CIRD 3AE8C 3P4PD 4YTMC 2WQYD 3AE3D 2H89C 3AE7C 3VRAC 1L0VD 2WU2D 3AEBD 4YT0C 1NEKD 1NENC 1ZP0D 3AEAD 2BS2C 3AECC 3P4SC 3AEGC 2ACZD 3AEED 4YXDD 3P4QD 2FBWC 1E7PC 3SFDD 2WDRC 2BS3C 3SFED 1KFYC 3ABVD 3VR9C 4KX6D 2WU5D 1YQ3C 4YSZD 2H88C 4YTNC 3AE2D 3AE9D 3VRBD 3AE4C 4YSYD 4YSXC 5C3JC 3AE1C 3P4RD 3AEFC 2WP9C 3VR8C 3AE6D 3AEDD 4YTPC 1YQ4D 1ZOYD 5C2TC 2B76D 1KF6C 3AE5C 2WDVC 2WDQD 2WS3D 3CIRC 3AE8D 3P4PC 4YTMD 2WQYC 3AE3C 2H89D 3AE7D 3VRAD 1L0VC 2WU2C 3AEBC 4YT0D 1NEKC 1NEND 1ZP0C 3AEAC 3AECD 3P4SD 3AEGD 2ACZC 3AEEC 4YXDC 3P4QC 2FBWD 3SFDC 2WDRD 3SFEC 1KFYD 3ABVC 3VR9D 4KX6C 2BS4C 1QLBC 2WU5C 1YQ3D 4YSZC 2H88D 4YTND 3AE2C 3AE9C 3VRBC 3AE4D 4YSYC 4YSXD 5C3JD 3AE1D 3P4RC 3AEFD 2WP9D 3VR8D 3AE6C 3AEDC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YTP D;  1YQ4 C;  1ZOY C;  5C2T D;  2B76 C;  1KF6 D;  3AE5 D;  2WDV D;  2WDQ C;  2WS3 C;  3CIR D;  3AE8 C;  3P4P D;  4YTM C;  2WQY D;  3AE3 D;  2H89 C;  3AE7 C;  3VRA C;  1L0V D;  2WU2 D;  3AEB D;  4YT0 C;  1NEK D;  1NEN C;  1ZP0 D;  3AEA D;  2BS2 C;  3AEC C;  3P4S C;  3AEG C;  2ACZ D;  3AEE D;  4YXD D;  3P4Q D;  2FBW C;  1E7P C;  3SFD D;  2WDR C;  2BS3 C;  3SFE D;  1KFY C;  3ABV D;  3VR9 C;  4KX6 D;  2WU5 D;  1YQ3 C;  4YSZ D;  2H88 C;  4YTN C;  3AE2 D;  3AE9 D;  3VRB D;  3AE4 C;  4YSY D;  4YSX C;  5C3J C;  3AE1 C;  3P4R D;  3AEF C;  2WP9 C;  3VR8 C;  3AE6 D;  3AED D;  4YTP C;  1YQ4 D;  1ZOY D;  5C2T C;  2B76 D;  1KF6 C;  3AE5 C;  2WDV C;  2WDQ D;  2WS3 D;  3CIR C;  3AE8 D;  3P4P C;  4YTM D;  2WQY C;  3AE3 C;  2H89 D;  3AE7 D;  3VRA D;  1L0V C;  2WU2 C;  3AEB C;  4YT0 D;  1NEK C;  1NEN D;  1ZP0 C;  3AEA C;  3AEC D;  3P4S D;  3AEG D;  2ACZ C;  3AEE C;  4YXD C;  3P4Q C;  2FBW D;  3SFD C;  2WDR D;  3SFE C;  1KFY D;  3ABV C;  3VR9 D;  4KX6 C;  2BS4 C;  1QLB C;  2WU5 C;  1YQ3 D;  4YSZ C;  2H88 D;  4YTN D;  3AE2 C;  3AE9 C;  3VRB C;  3AE4 D;  4YSY C;  4YSX D;  5C3J D;  3AE1 D;  3P4R C;  3AEF D;  2WP9 D;  3VR8 D;  3AE6 C;  3AED C; 
#chains in the Genus database with same CATH topology
 2ZFY A;  4YTP D;  1YQ4 C;  1ZOY C;  5C2T D;  2B76 C;  1KF6 D;  3AE5 D;  2WDV D;  2WDQ C;  2WS3 C;  3CIR D;  3AE8 C;  4DHJ A;  3P4P D;  4YTM C;  2WQY D;  3AE3 D;  2H89 C;  4I6L A;  3AE7 C;  3VRA C;  1L0V D;  2WU2 D;  3AEB D;  4YT0 C;  1NEK D;  1NEN C;  1ZP0 D;  3AEA D;  2BS2 C;  3AEC C;  3P4S C;  3AEG C;  4LDT A;  2ACZ D;  3AEE D;  4YXD D;  3P4Q D;  2FBW C;  4DDI A;  1E7P C;  3SFD D;  2WDR C;  2BS3 C;  3SFE D;  1TFF A;  1KFY C;  3ABV D;  3VR9 C;  4KX6 D;  2WU5 D;  1YQ3 C;  4YSZ D;  2H88 C;  4YTN C;  3AE2 D;  3AE9 D;  3VRB D;  4DDG A;  3AE4 C;  4YSY D;  4YSX C;  4DHZ A;  3AE1 C;  5C3J C;  3P4R D;  3AEF C;  2WP9 C;  3VR8 C;  3AE6 D;  3AED D;  4YTP C;  1YQ4 D;  1ZOY D;  5C2T C;  2B76 D;  1KF6 C;  3AE5 C;  2WDV C;  2WDQ D;  2WS3 D;  3CIR C;  3AE8 D;  3P4P C;  4YTM D;  2WQY C;  3AE3 C;  2H89 D;  3AE7 D;  3VRA D;  1L0V C;  2WU2 C;  3AEB C;  4YT0 D;  1NEK C;  1NEN D;  1ZP0 C;  3AEA C;  3AEC D;  3P4S D;  3AEG D;  2ACZ C;  3AEE C;  4YXD C;  3P4Q C;  2FBW D;  3SFD C;  2WDR D;  3SFE C;  1KFY D;  3ABV C;  3VR9 D;  4KX6 C;  3VON A;  2BS4 C;  1QLB C;  2WU5 C;  1YQ3 D;  4YSZ C;  2H88 D;  4YTN D;  3AE2 C;  3AE9 C;  3VRB C;  4FJV A;  3AE4 D;  4YSY C;  4DHI B;  4YSX D;  5C3J D;  3AE1 D;  3P4R C;  3AEF D;  2WP9 D;  3VR8 D;  3AE6 C;  3AED C; 
#chains in the Genus database with same CATH homology
 4YTP D;  1YQ4 C;  1ZOY C;  5C2T D;  2B76 C;  1KF6 D;  3AE5 D;  2WDV D;  2WDQ C;  2WS3 C;  3CIR D;  3AE8 C;  3P4P D;  4YTM C;  2WQY D;  3AE3 D;  2H89 C;  3AE7 C;  3VRA C;  1L0V D;  2WU2 D;  3AEB D;  4YT0 C;  1NEK D;  1NEN C;  1ZP0 D;  3AEA D;  2BS2 C;  3AEC C;  3P4S C;  3AEG C;  2ACZ D;  3AEE D;  4YXD D;  3P4Q D;  2FBW C;  1E7P C;  3SFD D;  2WDR C;  2BS3 C;  3SFE D;  1KFY C;  3ABV D;  3VR9 C;  4KX6 D;  2WU5 D;  1YQ3 C;  4YSZ D;  2H88 C;  4YTN C;  3AE2 D;  3AE9 D;  3VRB D;  3AE4 C;  4YSY D;  4YSX C;  5C3J C;  3AE1 C;  3P4R D;  3AEF C;  2WP9 C;  3VR8 C;  3AE6 D;  3AED D;  4YTP C;  1YQ4 D;  1ZOY D;  5C2T C;  2B76 D;  1KF6 C;  3AE5 C;  2WDV C;  2WDQ D;  2WS3 D;  3CIR C;  3AE8 D;  3P4P C;  4YTM D;  2WQY C;  3AE3 C;  2H89 D;  3AE7 D;  3VRA D;  1L0V C;  2WU2 C;  3AEB C;  4YT0 D;  1NEK C;  1NEN D;  1ZP0 C;  3AEA C;  3AEC D;  3P4S D;  3AEG D;  2ACZ C;  3AEE C;  4YXD C;  3P4Q C;  2FBW D;  3SFD C;  2WDR D;  3SFE C;  1KFY D;  3ABV C;  3VR9 D;  4KX6 C;  2BS4 C;  1QLB C;  2WU5 C;  1YQ3 D;  4YSZ C;  2H88 D;  4YTN D;  3AE2 C;  3AE9 C;  3VRB C;  3AE4 D;  4YSY C;  4YSX D;  5C3J D;  3AE1 D;  3P4R C;  3AEF D;  2WP9 D;  3VR8 D;  3AE6 C;  3AED C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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