3VR9D

Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode ascaris suum with the specific inhibitor flutolanil
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
129
structure length
129
Chain Sequence
TSAAVTGAAPPQFDPIAAEKGFKPLHSHGTLFKIERYFAAAMVPLIPAAYFIHGREMDLCLALALTLHVHWGVWGVVNDYGRPFVLGDTLAAAVRVGAYIFTACLLAGLLYFNEHDVGLTRAFEMVWEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Flavoprotein subunit of complex II
publication title Crystal structure of mitochondrial quinol-fumarate reductase from parasitic nematode Ascaris suum
rcsb
total genus 35
structure length 129
sequence length 129
chains with identical sequence H
ec nomenclature
pdb deposition date 2012-04-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF05328 CybS CybS, succinate dehydrogenase cytochrome B small subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3vr9D00
3AEFC 2ACZD 4YXDC 3AE3C 3P4SC 1NEND 1QLBC 4YTMD 4YSZD 1ZOYC 3ABVD 4YTPD 2WDVD 1YQ4D 1NEKD 1KF6D 5C3JC 2WS3C 3AE9D 3P4PC 2WP9C 3VR9D 1KFYC 3CIRC 3VRBC 3AEDD 2BS3C 3VRAC 4YTNC 2WU5C 3AE5C 3VR8C 2H89D 3P4RD 3AE7D 2WQYC 2H88D 3AE8D 4YSYD 4YSZC 3SFED 3AEGD 3AEBD 3P4QD 1YQ4C 4KX6D 3AEEC 4YSXC 4YT0D 5C2TD 2FBWD 3SFDD 2WDQC 3P4RC 3AE4C 2H88C 1L0VD 1YQ3D 2ACZC 3AEBC 3P4QC 4KX6C 1NENC 3AE2D 4YTMC 2WDRD 3ABVC 4YTPC 2WDVC 3AE1D 1NEKC 1KF6C 3SFDC 3AE9C 3AE3D 3P4SD 3VR9C 3AEDC 2BS4C 2B76D 1ZOYD 2H89C 2WU2D 3AE7C 3P4PD 2WP9D 3AE8C 3AECD 3AE2C 1KFYD 3CIRD 3VRBD 4YSYC 3AE6D 3VRAD 4YTND 3SFEC 3AEAD 2WU5D 3AEGC 3AE5D 3AE1C 3VR8D 1ZP0D 2WQYD 2BS2C 4YT0C 2B76C 3AEFD 5C2TC 2FBWC 2WU2C 3AEED 4YXDD 3AECC 4YSXD 1E7PC 3AE6C 1L0VC 1YQ3C 3AEAC 5C3JD 2WS3D 2WDQD 1ZP0C 3AE4D 2WDRC
chains in the Genus database with same CATH superfamily
3AEFC 4DDGA 2ACZD 1TFFA 4YXDC 3AE3C 3P4SC 1NEND 1QLBC 4YTMD 4YSZD 4LDTA 1ZOYC 3ABVD 4YTPD 2WDVD 1YQ4D 1NEKD 1KF6D 5C3JC 2WS3C 3AE9D 3P4PC 4DDIA 2WP9C 3VR9D 1KFYC 3CIRC 3VRBC 3AEDD 2BS3C 3VRAC 4YTNC 2WU5C 3AE5C 3VR8C 2H89D 3P4RD 3AE7D 2WQYC 2H88D 3AE8D 4YSYD 4YSZC 3SFED 3AEGD 3AEBD 3P4QD 1YQ4C 4KX6D 4DHJA 3AEEC 4YSXC 4YT0D 4I6LA 5C2TD 2FBWD 3SFDD 2WDQC 3P4RC 3AE4C 2H88C 1L0VD 1YQ3D 2ACZC 3AEBC 3VONA 3P4QC 4KX6C 2ZFYA 1NENC 3AE2D 4YTMC 2WDRD 3ABVC 4YTPC 2WDVC 3AE1D 1NEKC 1KF6C 3SFDC 3AE9C 3AE3D 3P4SD 3VR9C 3AEDC 2BS4C 2B76D 1ZOYD 2H89C 2WU2D 3AE7C 3P4PD 2WP9D 3AE8C 3AECD 3AE2C 1KFYD 3CIRD 3VRBD 4YSYC 3AE6D 3VRAD 4YTND 3SFEC 3AEAD 2WU5D 3AEGC 3AE5D 3AE1C 3VR8D 1ZP0D 2WQYD 2BS2C 4DHIB 4YT0C 2B76C 3AEFD 5C2TC 2FBWC 2WU2C 3AEED 4YXDD 3AECC 4YSXD 4DHZA 1E7PC 3AE6C 1L0VC 1YQ3C 4FJVA 3AEAC 5C3JD 2WS3D 2WDQD 1ZP0C 3AE4D 2WDRC
chains in the Genus database with same CATH topology
3AEFC 2ACZD 4YXDC 3AE3C 3P4SC 1NEND 1QLBC 4YTMD 4YSZD 1ZOYC 3ABVD 4YTPD 2WDVD 1YQ4D 1NEKD 1KF6D 5C3JC 2WS3C 3AE9D 3P4PC 2WP9C 3VR9D 1KFYC 3CIRC 3VRBC 3AEDD 2BS3C 3VRAC 4YTNC 2WU5C 3AE5C 3VR8C 2H89D 3P4RD 3AE7D 2WQYC 2H88D 3AE8D 4YSYD 4YSZC 3SFED 3AEGD 3AEBD 3P4QD 1YQ4C 4KX6D 3AEEC 4YSXC 4YT0D 5C2TD 2FBWD 3SFDD 2WDQC 3P4RC 3AE4C 2H88C 1L0VD 1YQ3D 2ACZC 3AEBC 3P4QC 4KX6C 1NENC 3AE2D 4YTMC 2WDRD 3ABVC 4YTPC 2WDVC 3AE1D 1NEKC 1KF6C 3SFDC 3AE9C 3AE3D 3P4SD 3VR9C 3AEDC 2BS4C 2B76D 1ZOYD 2H89C 2WU2D 3AE7C 3P4PD 2WP9D 3AE8C 3AECD 3AE2C 1KFYD 3CIRD 3VRBD 4YSYC 3AE6D 3VRAD 4YTND 3SFEC 3AEAD 2WU5D 3AEGC 3AE5D 3AE1C 3VR8D 1ZP0D 2WQYD 2BS2C 4YT0C 2B76C 3AEFD 5C2TC 2FBWC 2WU2C 3AEED 4YXDD 3AECC 4YSXD 1E7PC 3AE6C 1L0VC 1YQ3C 3AEAC 5C3JD 2WS3D 2WDQD 1ZP0C 3AE4D 2WDRC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AEF C;  2ACZ D;  4YXD C;  3AE3 C;  3P4S C;  1NEN D;  1QLB C;  4YTM D;  4YSZ D;  1ZOY C;  3ABV D;  4YTP D;  2WDV D;  1YQ4 D;  1NEK D;  1KF6 D;  5C3J C;  2WS3 C;  3AE9 D;  3P4P C;  2WP9 C;  3VR9 D;  1KFY C;  3CIR C;  3VRB C;  3AED D;  2BS3 C;  3VRA C;  4YTN C;  2WU5 C;  3AE5 C;  3VR8 C;  2H89 D;  3P4R D;  3AE7 D;  2WQY C;  2H88 D;  3AE8 D;  4YSY D;  4YSZ C;  3SFE D;  3AEG D;  3AEB D;  3P4Q D;  1YQ4 C;  4KX6 D;  3AEE C;  4YSX C;  4YT0 D;  5C2T D;  2FBW D;  3SFD D;  2WDQ C;  3P4R C;  3AE4 C;  2H88 C;  1L0V D;  1YQ3 D;  2ACZ C;  3AEB C;  3P4Q C;  4KX6 C;  1NEN C;  3AE2 D;  4YTM C;  2WDR D;  3ABV C;  4YTP C;  2WDV C;  3AE1 D;  1NEK C;  1KF6 C;  3SFD C;  3AE9 C;  3AE3 D;  3P4S D;  3VR9 C;  3AED C;  2BS4 C;  2B76 D;  1ZOY D;  2H89 C;  2WU2 D;  3AE7 C;  3P4P D;  2WP9 D;  3AE8 C;  3AEC D;  3AE2 C;  1KFY D;  3CIR D;  3VRB D;  4YSY C;  3AE6 D;  3VRA D;  4YTN D;  3SFE C;  3AEA D;  2WU5 D;  3AEG C;  3AE5 D;  3AE1 C;  3VR8 D;  1ZP0 D;  2WQY D;  2BS2 C;  4YT0 C;  2B76 C;  3AEF D;  5C2T C;  2FBW C;  2WU2 C;  3AEE D;  4YXD D;  3AEC C;  4YSX D;  1E7P C;  3AE6 C;  1L0V C;  1YQ3 C;  3AEA C;  5C3J D;  2WS3 D;  2WDQ D;  1ZP0 C;  3AE4 D;  2WDR C; 
#chains in the Genus database with same CATH topology
 3AEF C;  4DDG A;  2ACZ D;  1TFF A;  4YXD C;  3AE3 C;  3P4S C;  1NEN D;  1QLB C;  4YTM D;  4YSZ D;  4LDT A;  1ZOY C;  3ABV D;  4YTP D;  2WDV D;  1YQ4 D;  1NEK D;  1KF6 D;  5C3J C;  2WS3 C;  3AE9 D;  3P4P C;  4DDI A;  2WP9 C;  3VR9 D;  1KFY C;  3CIR C;  3VRB C;  3AED D;  2BS3 C;  3VRA C;  4YTN C;  2WU5 C;  3AE5 C;  3VR8 C;  2H89 D;  3P4R D;  3AE7 D;  2WQY C;  2H88 D;  3AE8 D;  4YSY D;  4YSZ C;  3SFE D;  3AEG D;  3AEB D;  3P4Q D;  1YQ4 C;  4KX6 D;  4DHJ A;  3AEE C;  4YSX C;  4YT0 D;  4I6L A;  5C2T D;  2FBW D;  3SFD D;  2WDQ C;  3P4R C;  3AE4 C;  2H88 C;  1L0V D;  1YQ3 D;  2ACZ C;  3AEB C;  3VON A;  3P4Q C;  4KX6 C;  2ZFY A;  1NEN C;  3AE2 D;  4YTM C;  2WDR D;  3ABV C;  4YTP C;  2WDV C;  3AE1 D;  1NEK C;  1KF6 C;  3SFD C;  3AE9 C;  3AE3 D;  3P4S D;  3VR9 C;  3AED C;  2BS4 C;  2B76 D;  1ZOY D;  2H89 C;  2WU2 D;  3AE7 C;  3P4P D;  2WP9 D;  3AE8 C;  3AEC D;  3AE2 C;  1KFY D;  3CIR D;  3VRB D;  4YSY C;  3AE6 D;  3VRA D;  4YTN D;  3SFE C;  3AEA D;  2WU5 D;  3AEG C;  3AE5 D;  3AE1 C;  3VR8 D;  1ZP0 D;  2WQY D;  2BS2 C;  4DHI B;  4YT0 C;  2B76 C;  3AEF D;  5C2T C;  2FBW C;  2WU2 C;  3AEE D;  4YXD D;  3AEC C;  4YSX D;  4DHZ A;  1E7P C;  3AE6 C;  1L0V C;  1YQ3 C;  4FJV A;  3AEA C;  5C3J D;  2WS3 D;  2WDQ D;  1ZP0 C;  3AE4 D;  2WDR C; 
#chains in the Genus database with same CATH homology
 3AEF C;  2ACZ D;  4YXD C;  3AE3 C;  3P4S C;  1NEN D;  1QLB C;  4YTM D;  4YSZ D;  1ZOY C;  3ABV D;  4YTP D;  2WDV D;  1YQ4 D;  1NEK D;  1KF6 D;  5C3J C;  2WS3 C;  3AE9 D;  3P4P C;  2WP9 C;  3VR9 D;  1KFY C;  3CIR C;  3VRB C;  3AED D;  2BS3 C;  3VRA C;  4YTN C;  2WU5 C;  3AE5 C;  3VR8 C;  2H89 D;  3P4R D;  3AE7 D;  2WQY C;  2H88 D;  3AE8 D;  4YSY D;  4YSZ C;  3SFE D;  3AEG D;  3AEB D;  3P4Q D;  1YQ4 C;  4KX6 D;  3AEE C;  4YSX C;  4YT0 D;  5C2T D;  2FBW D;  3SFD D;  2WDQ C;  3P4R C;  3AE4 C;  2H88 C;  1L0V D;  1YQ3 D;  2ACZ C;  3AEB C;  3P4Q C;  4KX6 C;  1NEN C;  3AE2 D;  4YTM C;  2WDR D;  3ABV C;  4YTP C;  2WDV C;  3AE1 D;  1NEK C;  1KF6 C;  3SFD C;  3AE9 C;  3AE3 D;  3P4S D;  3VR9 C;  3AED C;  2BS4 C;  2B76 D;  1ZOY D;  2H89 C;  2WU2 D;  3AE7 C;  3P4P D;  2WP9 D;  3AE8 C;  3AEC D;  3AE2 C;  1KFY D;  3CIR D;  3VRB D;  4YSY C;  3AE6 D;  3VRA D;  4YTN D;  3SFE C;  3AEA D;  2WU5 D;  3AEG C;  3AE5 D;  3AE1 C;  3VR8 D;  1ZP0 D;  2WQY D;  2BS2 C;  4YT0 C;  2B76 C;  3AEF D;  5C2T C;  2FBW C;  2WU2 C;  3AEE D;  4YXD D;  3AEC C;  4YSX D;  1E7P C;  3AE6 C;  1L0V C;  1YQ3 C;  3AEA C;  5C3J D;  2WS3 D;  2WDQ D;  1ZP0 C;  3AE4 D;  2WDR C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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