3VRAC

Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode ascaris suum with the specific inhibitor atpenin a5
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
153
structure length
153
Chain Sequence
EKTPIQVWGWDYLMRQRALKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEFIRGLGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKGTDIPSIYRGAYLVLGLAALISLAVVVYPRWERHKKATLPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Flavoprotein subunit of complex II
publication title Crystal structure of mitochondrial quinol-fumarate reductase from parasitic nematode Ascaris suum
rcsb
total genus 48
structure length 153
sequence length 153
chains with identical sequence G
ec nomenclature
pdb deposition date 2012-04-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3vraC00
3AE3C 1L0VC 4YT0D 3AE5C 3ABVC 3AE1D 3AE3D 1L0VD 3AE5D 1YQ4C 3ABVD 1E7PC 3P4SC 3AECC 1YQ4D 2WDQC 4YXDC 2FBWC 3P4SD 2WU5C 2WDQD 2WQYD 4YXDD 2FBWD 2B76C 2WU5D 5C3JC 3AEAC 4YTNC 2B76D 1NEKD 5C3JD 2BS2C 3AEDD 3P4PD 2ACZC 4KX6C 3P4QC 3AE9C 4YSXC 4KX6D 3P4QD 3AE9D 2H88C 4YSXD 2WDVC 3AECD 2BS4C 3AEBC 2WDVD 2WS3C 3AEBD 2WP9C 3AEEC 2WS3D 3AEAD 3AEFC 4YTND 1KFYC 3AE7C 3P4RC 1NENC 2H89C 3AEFD 3VR8C 4YTPC 2BS3C 3AE7D 3CIRC 1NEND 3P4RD 2H89D 3VRAC 2ACZD 4YTPD 3VRAD 4YSZC 1QLBC 3AE2C 4YTMC 1KF6C 2H88D 2WDRC 4YSZD 3AE2D 3SFEC 1ZP0C 1KF6D 2WDRD 3SFED 1ZP0D 3VR9C 1YQ3C 2WU2C 1YQ3D 3AE1C 2WP9D 3AEED 2WU2D 3VRBC 1KFYD 3VRBD 3VR8D 3CIRD 2WQYC 3AEGC 3AE4C 3SFDC 4YSYC 3AEGD 3AE4D 1NEKC 4YTMD 3SFDD 4YSYD 3AE6C 1ZOYC 3AEDC 5C2TC 3P4PC 3AE6D 3AE8C 1ZOYD 5C2TD 3VR9D 3AE8D 4YT0C
chains in the Genus database with same CATH superfamily
3AE3C 1L0VC 4YT0D 3AE5C 3ABVC 3AE1D 4DDIA 3AE3D 1L0VD 1TFFA 3AE5D 1YQ4C 3ABVD 1E7PC 3P4SC 3AECC 1YQ4D 2WDQC 4YXDC 2FBWC 3P4SD 2WU5C 3VONA 2WDQD 2WQYD 4YXDD 2FBWD 2B76C 2WU5D 5C3JC 3AEAC 4YTNC 2B76D 1NEKD 5C3JD 2BS2C 3AEDD 3P4PD 2ACZC 4KX6C 3P4QC 3AE9C 4FJVA 4YSXC 4KX6D 3P4QD 3AE9D 4DHZA 2H88C 4YSXD 4DHIB 2WDVC 3AECD 2BS4C 3AEBC 2WDVD 2WS3C 3AEBD 2WP9C 3AEEC 2WS3D 3AEAD 3AEFC 4YTND 1KFYC 4I6LA 3AE7C 3P4RC 1NENC 2H89C 3AEFD 3VR8C 4YTPC 2BS3C 3AE7D 3CIRC 1NEND 3P4RD 2H89D 3VRAC 2ACZD 2ZFYA 4YTPD 3VRAD 4YSZC 1QLBC 3AE2C 4YTMC 1KF6C 2H88D 2WDRC 4YSZD 3AE2D 3SFEC 4DDGA 1ZP0C 1KF6D 2WDRD 3SFED 1ZP0D 3VR9C 1YQ3C 2WU2C 1YQ3D 3AE1C 2WP9D 3AEED 2WU2D 3VRBC 4LDTA 1KFYD 4DHJA 3VRBD 3VR8D 3CIRD 2WQYC 3AEGC 3AE4C 3SFDC 4YSYC 3AEGD 3AE4D 1NEKC 4YTMD 3SFDD 4YSYD 3AE6C 1ZOYC 3AEDC 5C2TC 3P4PC 3AE6D 3AE8C 1ZOYD 5C2TD 3VR9D 3AE8D 4YT0C
chains in the Genus database with same CATH topology
3AE3C 1L0VC 4YT0D 3AE5C 3ABVC 3AE1D 3AE3D 1L0VD 3AE5D 1YQ4C 3ABVD 1E7PC 3P4SC 3AECC 1YQ4D 2WDQC 4YXDC 2FBWC 3P4SD 2WU5C 2WDQD 2WQYD 4YXDD 2FBWD 2B76C 2WU5D 5C3JC 3AEAC 4YTNC 2B76D 1NEKD 5C3JD 2BS2C 3AEDD 3P4PD 2ACZC 4KX6C 3P4QC 3AE9C 4YSXC 4KX6D 3P4QD 3AE9D 2H88C 4YSXD 2WDVC 3AECD 2BS4C 3AEBC 2WDVD 2WS3C 3AEBD 2WP9C 3AEEC 2WS3D 3AEAD 3AEFC 4YTND 1KFYC 3AE7C 3P4RC 1NENC 2H89C 3AEFD 3VR8C 4YTPC 2BS3C 3AE7D 3CIRC 1NEND 3P4RD 2H89D 3VRAC 2ACZD 4YTPD 3VRAD 4YSZC 1QLBC 3AE2C 4YTMC 1KF6C 2H88D 2WDRC 4YSZD 3AE2D 3SFEC 1ZP0C 1KF6D 2WDRD 3SFED 1ZP0D 3VR9C 1YQ3C 2WU2C 1YQ3D 3AE1C 2WP9D 3AEED 2WU2D 3VRBC 1KFYD 3VRBD 3VR8D 3CIRD 2WQYC 3AEGC 3AE4C 3SFDC 4YSYC 3AEGD 3AE4D 1NEKC 4YTMD 3SFDD 4YSYD 3AE6C 1ZOYC 3AEDC 5C2TC 3P4PC 3AE6D 3AE8C 1ZOYD 5C2TD 3VR9D 3AE8D 4YT0C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AE3 C;  1L0V C;  4YT0 D;  3AE5 C;  3ABV C;  3AE1 D;  3AE3 D;  1L0V D;  3AE5 D;  1YQ4 C;  3ABV D;  1E7P C;  3P4S C;  3AEC C;  1YQ4 D;  2WDQ C;  4YXD C;  2FBW C;  3P4S D;  2WU5 C;  2WDQ D;  2WQY D;  4YXD D;  2FBW D;  2B76 C;  2WU5 D;  5C3J C;  3AEA C;  4YTN C;  2B76 D;  1NEK D;  5C3J D;  2BS2 C;  3AED D;  3P4P D;  2ACZ C;  4KX6 C;  3P4Q C;  3AE9 C;  4YSX C;  4KX6 D;  3P4Q D;  3AE9 D;  2H88 C;  4YSX D;  2WDV C;  3AEC D;  2BS4 C;  3AEB C;  2WDV D;  2WS3 C;  3AEB D;  2WP9 C;  3AEE C;  2WS3 D;  3AEA D;  3AEF C;  4YTN D;  1KFY C;  3AE7 C;  3P4R C;  1NEN C;  2H89 C;  3AEF D;  3VR8 C;  4YTP C;  2BS3 C;  3AE7 D;  3CIR C;  1NEN D;  3P4R D;  2H89 D;  3VRA C;  2ACZ D;  4YTP D;  3VRA D;  4YSZ C;  1QLB C;  3AE2 C;  4YTM C;  1KF6 C;  2H88 D;  2WDR C;  4YSZ D;  3AE2 D;  3SFE C;  1ZP0 C;  1KF6 D;  2WDR D;  3SFE D;  1ZP0 D;  3VR9 C;  1YQ3 C;  2WU2 C;  1YQ3 D;  3AE1 C;  2WP9 D;  3AEE D;  2WU2 D;  3VRB C;  1KFY D;  3VRB D;  3VR8 D;  3CIR D;  2WQY C;  3AEG C;  3AE4 C;  3SFD C;  4YSY C;  3AEG D;  3AE4 D;  1NEK C;  4YTM D;  3SFD D;  4YSY D;  3AE6 C;  1ZOY C;  3AED C;  5C2T C;  3P4P C;  3AE6 D;  3AE8 C;  1ZOY D;  5C2T D;  3VR9 D;  3AE8 D;  4YT0 C; 
#chains in the Genus database with same CATH topology
 3AE3 C;  1L0V C;  4YT0 D;  3AE5 C;  3ABV C;  3AE1 D;  4DDI A;  3AE3 D;  1L0V D;  1TFF A;  3AE5 D;  1YQ4 C;  3ABV D;  1E7P C;  3P4S C;  3AEC C;  1YQ4 D;  2WDQ C;  4YXD C;  2FBW C;  3P4S D;  2WU5 C;  3VON A;  2WDQ D;  2WQY D;  4YXD D;  2FBW D;  2B76 C;  2WU5 D;  5C3J C;  3AEA C;  4YTN C;  2B76 D;  1NEK D;  5C3J D;  2BS2 C;  3AED D;  3P4P D;  2ACZ C;  4KX6 C;  3P4Q C;  3AE9 C;  4FJV A;  4YSX C;  4KX6 D;  3P4Q D;  3AE9 D;  4DHZ A;  2H88 C;  4YSX D;  4DHI B;  2WDV C;  3AEC D;  2BS4 C;  3AEB C;  2WDV D;  2WS3 C;  3AEB D;  2WP9 C;  3AEE C;  2WS3 D;  3AEA D;  3AEF C;  4YTN D;  1KFY C;  4I6L A;  3AE7 C;  3P4R C;  1NEN C;  2H89 C;  3AEF D;  3VR8 C;  4YTP C;  2BS3 C;  3AE7 D;  3CIR C;  1NEN D;  3P4R D;  2H89 D;  3VRA C;  2ACZ D;  2ZFY A;  4YTP D;  3VRA D;  4YSZ C;  1QLB C;  3AE2 C;  4YTM C;  1KF6 C;  2H88 D;  2WDR C;  4YSZ D;  3AE2 D;  3SFE C;  4DDG A;  1ZP0 C;  1KF6 D;  2WDR D;  3SFE D;  1ZP0 D;  3VR9 C;  1YQ3 C;  2WU2 C;  1YQ3 D;  3AE1 C;  2WP9 D;  3AEE D;  2WU2 D;  3VRB C;  4LDT A;  1KFY D;  4DHJ A;  3VRB D;  3VR8 D;  3CIR D;  2WQY C;  3AEG C;  3AE4 C;  3SFD C;  4YSY C;  3AEG D;  3AE4 D;  1NEK C;  4YTM D;  3SFD D;  4YSY D;  3AE6 C;  1ZOY C;  3AED C;  5C2T C;  3P4P C;  3AE6 D;  3AE8 C;  1ZOY D;  5C2T D;  3VR9 D;  3AE8 D;  4YT0 C; 
#chains in the Genus database with same CATH homology
 3AE3 C;  1L0V C;  4YT0 D;  3AE5 C;  3ABV C;  3AE1 D;  3AE3 D;  1L0V D;  3AE5 D;  1YQ4 C;  3ABV D;  1E7P C;  3P4S C;  3AEC C;  1YQ4 D;  2WDQ C;  4YXD C;  2FBW C;  3P4S D;  2WU5 C;  2WDQ D;  2WQY D;  4YXD D;  2FBW D;  2B76 C;  2WU5 D;  5C3J C;  3AEA C;  4YTN C;  2B76 D;  1NEK D;  5C3J D;  2BS2 C;  3AED D;  3P4P D;  2ACZ C;  4KX6 C;  3P4Q C;  3AE9 C;  4YSX C;  4KX6 D;  3P4Q D;  3AE9 D;  2H88 C;  4YSX D;  2WDV C;  3AEC D;  2BS4 C;  3AEB C;  2WDV D;  2WS3 C;  3AEB D;  2WP9 C;  3AEE C;  2WS3 D;  3AEA D;  3AEF C;  4YTN D;  1KFY C;  3AE7 C;  3P4R C;  1NEN C;  2H89 C;  3AEF D;  3VR8 C;  4YTP C;  2BS3 C;  3AE7 D;  3CIR C;  1NEN D;  3P4R D;  2H89 D;  3VRA C;  2ACZ D;  4YTP D;  3VRA D;  4YSZ C;  1QLB C;  3AE2 C;  4YTM C;  1KF6 C;  2H88 D;  2WDR C;  4YSZ D;  3AE2 D;  3SFE C;  1ZP0 C;  1KF6 D;  2WDR D;  3SFE D;  1ZP0 D;  3VR9 C;  1YQ3 C;  2WU2 C;  1YQ3 D;  3AE1 C;  2WP9 D;  3AEE D;  2WU2 D;  3VRB C;  1KFY D;  3VRB D;  3VR8 D;  3CIR D;  2WQY C;  3AEG C;  3AE4 C;  3SFD C;  4YSY C;  3AEG D;  3AE4 D;  1NEK C;  4YTM D;  3SFD D;  4YSY D;  3AE6 C;  1ZOY C;  3AED C;  5C2T C;  3P4P C;  3AE6 D;  3AE8 C;  1ZOY D;  5C2T D;  3VR9 D;  3AE8 D;  4YT0 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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