The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
24
|
sequence length |
95
|
structure length |
95
|
Chain Sequence |
NAGLHGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVVEAYSGLT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Structural insights into RISC assembly facilitated by dsRNA-binding domains of human RNA helicase A (DHX9)
pubmed doi rcsb |
molecule tags |
Hydrolase/rna
|
source organism |
Homo sapiens
|
molecule keywords |
ATP-dependent RNA helicase A
|
total genus |
24
|
structure length |
95
|
sequence length |
95
|
ec nomenclature |
ec
3.6.4.13: RNA helicase. |
pdb deposition date | 2012-10-05 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF00035 | dsrm | Double-stranded RNA binding motif |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Double Stranded RNA Binding Domain |
#chains in the Genus database with same CATH superfamily 1XNR E; 2VQF E; 3C4B A; 4K0K E; 4DR5 E; 4DR6 E; 4DV3 E; 4GKJ E; 4JI8 E; 2B7T A; 4M30 A; 4JI2 E; 4WFT A; 1IBK E; 4JI6 E; 1IBL E; 2VQE E; 2UXB E; 3LLH A; 3VYY A; 1RC7 A; 1XNQ E; 2UUC E; 4X62 E; 5LMN E; 2E5L E; 3P1X A; 1N34 E; 2L2K B; 2L2M A; 2RS7 A; 4JI3 E; 2F4V E; 2UU9 E; 2KHX A; 4LF6 E; 4B3T E; 4NXM E; 4DUZ E; 2LTR A; 2MDR A; 2DMY A; 4YY3 E; 2B3T B; 4X64 E; 2EZ6 A; 4DV1 E; 1HNW E; 2RTX A; 3ADL A; 3VYX A; 1FKA E; 4DV7 E; 4AQY E; 4JI4 E; 1DI2 A; 2JVA A; 3C4T A; 1X49 A; 3ADG A; 2NUF A; 1ZBT A; 3ADI A; 1J5E E; 4DV6 E; 4JI7 E; 4WYQ B; 1I94 E; 4DR7 E; 2UXC E; 1XMO E; 4OOG C; 3T1H E; 2B7V A; 2JY9 A; 4NXN E; 2LUP B; 4X66 E; 1J26 A; 4X8W A; 2LBS B; 4DKK A; 4JI0 E; 1T4N A; 2DB2 A; 2LRS A; 1WHQ A; 2L3C A; 4M2Z A; 1IBM E; 1HNX E; 4DR2 E; 4LF9 E; 1RQ0 A; 1STU A; 5BR8 E; 2ZM6 E; 4DV4 E; 4GKK E; 5LMU E; 4LFC E; 4DR3 E; 1UHZ A; 5CFF E; 2LJH A; 4LFA E; 3T1Y E; 1YYW A; 4JYA E; 4LF4 E; 4DR4 E; 4LF7 E; 2UXD E; 2L33 A; 4B3R E; 4KHP E; 1X48 A; 2HHH E; 1HNZ E; 1QU6 A; 2UUB E; 1O0W A; 2NA2 A; 4DUY E; 3HTX A; 5IWA E; 2YT4 A; 1N32 E; 2NUE A; 1YYK A; 2LUQ A; 1FJG E; 1T4L B; 1HR0 E; 4JI5 E; 2RS6 A; 1UIL A; 2L3J A; 4DV5 E; 4LFB E; 4B3M E; 3OTO E; 2CPN A; 4LF5 E; 4DV0 E; 3ADJ A; 4JI1 E; 1N33 E; 2IHR 1; 1YYO A; 4DR1 E; 1WHN A; 4OX9 E; 1EKZ A; 4LF8 E; 1PKP A; 1YZ9 A; 2N3G A; 1T4O A; 2L2N A; 2LTS A; 2RSM A; 4DV2 E; 2NUG A; 4YHH E; 4B3S E; 1X47 A; 1GQE A; 2UUA E; 2N3H A; 4X65 E; 1XMQ E; 3J7Y p; 2DIX A; 1N36 E; 4JV5 E; #chains in the Genus database with same CATH topology 1L4S A; 2V89 A; 4K0K E; 3C4B A; 2ODR D; 4DR5 E; 4J8Z A; 1ZBQ A; 3ECR A; 2LT7 A; 4ZYE A; 3MHS C; 2EN4 A; 3EPL A; 4BMJ A; 2VQE E; 3LML A; 1YSA C; 1XNQ E; 2EMB A; 2EM7 A; 2LV2 A; 2EN7 A; 5A6K A; 1LLM C; 5KL2 A; 1QNT A; 1AH5 A; 3BGH A; 2EOY A; 2M1S A; 3DF6 A; 2EN8 A; 2ENC A; 2V83 A; 1YUI A; 2UU9 E; 1IQO A; 2L6M A; 1PJQ A; 4B3T E; 4DUZ E; 2LTR A; 2DMY A; 4X64 E; 1RMD A; 4HEI A; 2F8B A; 4Q35 B; 3HXL A; 3ZOQ B; 4M0V A; 4F9B B; 2EOI A; 2HGH A; 2JXP A; 4BCA A; 3C4T A; 1ZBT A; 1A1K A; 4DV6 E; 4WYQ B; 3AUZ A; 2EMF A; 2EN2 A; 3KZZ A; 4WSG A; 4X66 E; 4X8W A; 2EM2 A; 1T4N A; 3BBG A; 3F6G A; 4GEQ B; 2JP9 A; 4P7D A; 4M2Z A; 2EM4 A; 4R2E A; 4DR2 E; 2LE2 A; 1A1I A; 2EM8 A; 2LJU A; 3KWR A; 4R2Q A; 1F2I G; 2YTI A; 2EPR A; 2GPI A; 5AE2 A; 5FLX C; 4F9A B; 3THN A; 3HPS A; 3T1Y E; 1YYW A; 2K4V A; 4X9J A; 2EOH A; 2CT1 A; 5AE1 A; 1HNZ E; 2GLI A; 5IWA E; 1N32 E; 1PJS A; 4O24 A; 1YFH A; 2E1M A; 5TSE A; 3JAM C; 2L3J A; 1A1F A; 4LFB E; 2CPN A; 4FK5 C; 1N33 E; 3ADJ A; 4JI1 E; 2IHR 1; 1YYO A; 3DJW A; 4OX9 E; 2V88 A; 2N3G A; 4F2J C; 2RSM A; 2Q8U A; 3J81 C; 1P47 A; 2JYA A; 3BID A; 1DGC A; 1GQE A; 1KJK A; 1XMQ E; 4X65 E; 4O4K A; 2NAB A; 2EM9 A; 3J7Y p; 1YUJ A; 3THO B; 1SR9 A; 2EOS A; 2VQF E; 4DV3 E; 4JI8 E; 2B7T A; 4M30 A; 4WFT A; 1IBK E; 2EPN A; 4JI6 E; 1IBL E; 2EMK A; 2LMZ A; 1X5W A; 2I9I A; 2RSI A; 2UUC E; 4X62 E; 2YTE A; 4MLV A; 5LMN E; 2KOU A; 3P1X A; 1EH8 A; 1UN6 B; 1AAY A; 5KL6 A; 1JK1 A; 2RS7 A; 4IS1 C; 4JI3 E; 3RMP A; 2EOE A; 5IV8 B; 2YU5 A; 2YU8 A; 2KHX A; 1X6H A; 2EJ4 A; 5AAS A; 1IQS A; 4YY3 E; 2DGC A; 3QG5 C; 1HNW E; 3IWB A; 2RTX A; 4R03 A; 4F9C B; 4Q28 A; 3VYX A; 5KL3 A; 1T38 A; 5T6J A; 4JI4 E; 3AV0 A; 1GZ6 A; 2JVA A; 1NEI A; 1X49 A; 2NUF A; 4M9V C; 4JI7 E; 1I94 E; 4F54 A; 1N3G A; 4NXN E; 2JY9 A; 2D9H A; 4BHC A; 2LUP B; 2EPO A; 3TQM A; 1J26 A; 1KYQ A; 2EPX A; 4JI0 E; 2DB2 A; 4R2C A; 1WHQ A; 1IBM E; 1A1L A; 1JK2 A; 1RQ0 A; 5A6B D; 1BBG A; 2EWL A; 5A6J A; 5IXM B; 4IJD A; 2WBT A; 2YTN A; 2YTO A; 4R2R A; 4R2S A; 5LMU E; 4BC9 A; 1SFE A; 2J7J A; 1UHZ A; 2FV4 B; 5CFF E; 4LFA E; 2EPP A; 1YPN A; 1X6E A; 2ADR A; 2L33 A; 4B3R E; 5AE3 A; 4KHP E; 1X48 A; 2K7I A; 2YRK A; 2UUB E; 4DUY E; 5LL6 R; 2EMG A; 2HC5 A; 2YT4 A; 3HPZ A; 2NUE A; 1FJG E; 2RS6 A; 3C6M A; 1EH7 A; 4ZYH A; 4B3M E; 3OTO E; 4DV0 E; 1WHN A; 4RHB B; 1EKZ A; 4TUI A; 2YTD A; 1X3C A; 3MSW A; 1T4O A; 2YTQ A; 4L5N C; 3EPJ A; 2JPA A; 3HQ1 A; 1TF3 A; 2YTJ A; 3OML A; 2DRP A; 2UUA E; 2N3H A; 1G2F C; 2BBG A; 5KL4 A; 3IWC A; 4JV5 E; 3C6K A; 4F6N A; 3F6H A; 2YRM A; 1XNR E; 2EL5 A; 4DR6 E; 2ELZ A; 4R2D A; 2EOX A; 4JI2 E; 2M7Q A; 2ODR C; 2EPK X; 3LLH A; 3H09 A; 2KON A; 1N34 E; 2MDG A; 2YRH A; 4O5G A; 1A1H A; 2H36 X; 4L8N A; 1G2D C; 5A69 A; 2FTX B; 4LU9 A; 2LVH A; 4LF6 E; 2JWO A; 1WXR A; 3J80 C; 3VK6 A; 4DMI A; 2B3T B; 2V8Q B; 1NCS A; 2EPZ A; 2EZ6 A; 2YZT A; 2RQL A; 2JOX A; 3ADL A; 2EOM A; 2YTP A; 3K6Q A; 2CTD A; 1PDA A; 3EQ1 A; 4AQY E; 1DI2 A; 2EOO A; 2GHF A; 2MC6 A; 3ADG A; 3ADI A; 3JTZ A; 4BC7 A; 5AC4 A; 1X6F A; 2UXC E; 1XMO E; 3L00 A; 3T1H E; 2R76 A; 1DQ3 A; 1Z1B A; 2VF1 A; 2EN3 A; 2L8T A; 4NHR A; 2EPL X; 2EM3 A; 1ZR9 A; 2YWQ A; 5KL5 A; 2L3C A; 3IWD A; 1WJP A; 1BBO A; 4LF9 E; 4R2A A; 2LCE A; 2R1F A; 5BR8 E; 3J7A G; 3UK3 C; 2V87 A; 2VE7 C; 2RPC A; 4LFC E; 2EOZ A; 4DR3 E; 2EN6 A; 2EPC A; 1UBD C; 2WCC 3; 2WBS A; 4DR4 E; 5F3W A; 1MEY C; 1QU6 A; 3FIG A; 5LLQ A; 4WSP A; 4RH8 A; 2EOR A; 1YYK A; 1WRJ A; 2LUQ A; 1T4L B; 2EL4 A; 1HR0 E; 1A1G A; 2HJJ A; 4BHB A; 4LF5 E; 2EMW A; 4DR1 E; 2M4I A; 3BF2 A; 4LF8 E; 1PKP A; 4KZS A; 2V85 A; 4O43 A; 2LTS A; 2L2N A; 4YHH E; 4P78 A; 2DLK A; 2DSY A; 2EM6 A; 2EQ3 A; 2YTF A; 2EMY A; 2M9A A; 2EPU A; 2DIX A; 2LO3 A; 1N36 E; 4JYA E; 2CSH A; 4TUG A; 4GKJ E; 2WZO A; 5A2Q C; 3M99 B; 2EMC A; 1TN9 A; 2MKN A; 2G7H A; 3VHT B; 2UXB E; 2EPM X; 1ZAA C; 3VYY A; 1RC7 A; 1BB8 A; 4NZV A; 2N8X A; 2EML A; 2A25 A; 2E5L E; 2EN1 A; 2ENH A; 2B9D A; 2L2M A; 2EMZ A; 2EMX A; 4BS9 A; 2F4V E; 4NXM E; 2BB8 A; 4ZYD A; 2MDR A; 4BBY A; 3MHH C; 2DLQ A; 4DV1 E; 4MLQ A; 2EM0 A; 2EMA A; 4F6M A; 2YTG A; 3EPH A; 1FKA E; 4DV7 E; 2PRT A; 2L92 A; 3JU0 A; 4WPY A; 1J5E E; 2VRD A; 5A6A A; 4DR7 E; 5ADZ A; 2V86 A; 4OOG C; 2B7V A; 1MGT A; 2YPN A; 4WX9 A; 2LBS B; 4DKK A; 2EOQ A; 2JOB A; 1PJT A; 2LRS A; 2DMI A; 2EOF A; 1HNX E; 5DNY A; 2EPA A; 1STU A; 2EP3 A; 2ZM6 E; 1T39 A; 2EM5 A; 4R8O A; 2JR1 A; 4DV4 E; 4GKK E; 1EH6 A; 1GTK A; 2FGG A; 1A1J A; 4ZYG A; 2YSP A; 2LJH A; 2I13 A; 4N4R B; 2MKD A; 4LF4 E; 4LF7 E; 2UXD E; 2ELY A; 2HHH E; 1TF6 A; 1B69 A; 1O0W A; 2MC5 A; 2NA2 A; 3HTX A; 5KL7 A; 4I8O A; 4LTY A; 4R2P A; 2EMH A; 4JI5 E; 4DV5 E; 1UIL A; 2ENA A; 4WXD A; 3KZY A; 4WXC A; 1ZU1 A; 2YSO A; 4GZN C; 4KWY A; 1YZ9 A; 2E72 A; 2NUG A; 4DV2 E; 4HTG A; 2EL6 A; 4B3S E; 3EPK A; 1X47 A; 2EQ1 A; 1IMU A; 2EQ0 A; 2WBU A; 2EE8 A; 5IT9 C; 5A6B A; 5AC5 A; 2EMI A; 2EOJ A; 2L2K B; #chains in the Genus database with same CATH homology 1SR9 A; 2V89 A; 3F6H A; 1XNR E; 2VQF E; 3C4B A; 4K0K E; 2ODR D; 4DR5 E; 4DV3 E; 4DR6 E; 4TUG A; 4J8Z A; 4GKJ E; 1ZBQ A; 2WZO A; 5A2Q C; 4LF6 E; 4JI8 E; 2B7T A; 4M30 A; 2M7Q A; 4JI2 E; 4WFT A; 1IBK E; 2ODR C; 4BMJ A; 4JI6 E; 1IBL E; 2LMZ A; 2G7H A; 3LML A; 2VQE E; 3LLH A; 2UXB E; 3H09 A; 3VYY A; 1RC7 A; 1XNQ E; 2UXC E; 2UUC E; 2KON A; 4X62 E; 5LMN E; 2KOU A; 4DR7 E; 2E5L E; 3P1X A; 1N34 E; 2L2K B; 2M1S A; 2H36 X; 3DF6 A; 4L8N A; 2B9D A; 2RS7 A; 2L2M A; 4JI3 E; 3RMP A; 4BS9 A; 2F4V E; 2V83 A; 2FTX B; 4LU9 A; 2UU9 E; 2JWO A; 2KHX A; 2L6M A; 1WXR A; 3J80 C; 4DUZ E; 2LTR A; 3VK6 A; 4B3T E; 4NXM E; 2MDR A; 5AAS A; 4BBY A; 4DMI A; 2DMY A; 4YY3 E; 2B3T B; 4X64 E; 2V8Q B; 2F8B A; 2EZ6 A; 4DV1 E; 1HNW E; 3IWB A; 3HXL A; 2YZT A; 3ZOQ B; 2JOX A; 2RTX A; 4M0V A; 4F9B B; 3ADL A; 4R03 A; 4F9C B; 4Q28 A; 3VYX A; 1FKA E; 4DV7 E; 2L92 A; 3K6Q A; 3JU0 A; 5T6J A; 4WPY A; 4AQY E; 3AV0 A; 1GZ6 A; 4JI4 E; 4BCA A; 1DI2 A; 2JVA A; 3C4T A; 2MC6 A; 1X49 A; 3ADG A; 2NUF A; 1ZBT A; 3ADI A; 1J5E E; 3JTZ A; 4DV6 E; 4JI7 E; 4BC7 A; 4WYQ B; 1I94 E; 4F54 A; 3AUZ A; 5ADZ A; 2V86 A; 1XMO E; 4OOG C; 3T1H E; 2B7V A; 2JY9 A; 4NXN E; 2LUP B; 1DQ3 A; 4X66 E; 1J26 A; 4X8W A; 2VF1 A; 2LBS B; 2L8T A; 4DKK A; 4JI0 E; 1T4N A; 3F6G A; 2DB2 A; 2JOB A; 4GEQ B; 4P7D A; 2LRS A; 1WHQ A; 2L3C A; 4M2Z A; 3IWD A; 1HNX E; 1IBM E; 5DNY A; 2LE2 A; 4DR2 E; 4LF9 E; 1RQ0 A; 1STU A; 3J7A G; 5BR8 E; 2ZM6 E; 2EWL A; 2V87 A; 2VE7 C; 4R8O A; 2JR1 A; 4DV4 E; 4GKK E; 2FGG A; 3KWR A; 5LMU E; 4BC9 A; 4LFC E; 4DR3 E; 5AE2 A; 1UHZ A; 2FV4 B; 2LJH A; 5CFF E; 5FLX C; 4F9A B; 4LFA E; 3T1Y E; 3HPS A; 1YYW A; 2K4V A; 4LF4 E; 4DR4 E; 4LF7 E; 4JYA E; 2UXD E; 5F3W A; 2L33 A; 4B3R E; 5AE3 A; 4KHP E; 1X48 A; 2HHH E; 5AE1 A; 1HNZ E; 1QU6 A; 2UUB E; 1O0W A; 3FIG A; 2MC5 A; 2NA2 A; 4DUY E; 5LL6 R; 3HTX A; 4WSP A; 4I8O A; 4LTY A; 5IWA E; 2YT4 A; 3HPZ A; 1N32 E; 2NUE A; 1YYK A; 2LUQ A; 1FJG E; 1T4L B; 1HR0 E; 4JI5 E; 2RS6 A; 1UIL A; 2E1M A; 3JAM C; 2L3J A; 4DV5 E; 4B3M E; 4LFB E; 3OTO E; 2CPN A; 4LF5 E; 4DV0 E; 3ADJ A; 4JI1 E; 1N33 E; 2IHR 1; 1YYO A; 4DR1 E; 1WHN A; 3DJW A; 4OX9 E; 2M4I A; 1EKZ A; 4TUI A; 4LF8 E; 2V88 A; 1PKP A; 1YZ9 A; 2N3G A; 4KZS A; 2V85 A; 3MSW A; 1T4O A; 2L2N A; 2LTS A; 2RSM A; 4L5N C; 4DV2 E; 3J81 C; 2NUG A; 4YHH E; 3HQ1 A; 4B3S E; 4P78 A; 1X47 A; 1GQE A; 3OML A; 2UUA E; 2DSY A; 2N3H A; 4X65 E; 5IT9 C; 1XMQ E; 3IWC A; 3J7Y p; 2DIX A; 1N36 E; 4JV5 E;
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