3VZAA

Crystal structure of the chicken spc24-spc25 globular domain in complex with cenp-t peptide
Total Genus 28
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
98
structure length
98
Chain Sequence
RVERLCKSKELFEERLGLEIRRIHNEQLQFIFRHIDHKDPDKPYMFTLSINEQGDYEVTSCTPPLDCISEFQLKVRETNNFSAFIANIRKAFTALSFK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title CENP-T provides a structural platform for outer kinetochore assembly
pubmed doi rcsb
molecule tags Cell cycle
source organism Gallus gallus
molecule keywords Uncharacterized protein
total genus 28
structure length 98
sequence length 98
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08234 Spindle_Spc25 Chromosome segregation protein Spc25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.457.50 Alpha Beta 2-Layer Sandwich Copper Amine Oxidase; Chain A, domain 1 Copper Amine Oxidase; Chain A, domain 1 3vzaA00
2FTXA 4GEQA 3VZAA 3VZ9B 2FV4A 5TCSD 5T6JB
chains in the Genus database with same CATH superfamily
1OACA 2WO0A 4GEQA 3VZ9B 3K1LA 1SPUA 2W0QA 5T6JB 1D6YA 2FTXA 2WOFA 2FV4A 1JRQA 1QALA 4DZOA 2WOHA 1QAFA 1DYUA 2WGQA 5TCSD 1D6ZA 3VZAA 1LVNA 1QAKA 1D6UA
chains in the Genus database with same CATH topology
2FTXA 4GEQA 3VZAA 3VZ9B 5TCSD 2FV4A 4DZOA 3K1LA 5T6JB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FTX A;  4GEQ A;  3VZA A;  3VZ9 B;  2FV4 A;  5TCS D;  5T6J B; 
#chains in the Genus database with same CATH topology
 1OAC A;  2WO0 A;  4GEQ A;  3VZ9 B;  3K1L A;  1SPU A;  2W0Q A;  5T6J B;  1D6Y A;  2FTX A;  2WOF A;  2FV4 A;  1JRQ A;  1QAL A;  4DZO A;  2WOH A;  1QAF A;  1DYU A;  2WGQ A;  5TCS D;  1D6Z A;  3VZA A;  1LVN A;  1QAK A;  1D6U A; 
#chains in the Genus database with same CATH homology
 2FTX A;  4GEQ A;  3VZA A;  3VZ9 B;  5TCS D;  2FV4 A;  4DZO A;  3K1L A;  5T6J B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...