3VZFA

Crystal structure of human pancreatic secretory protein zg16p with methyl alpha-d-mannopyranoside
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
138
structure length
138
Chain Sequence
RSSSYSGEYGSGGGKRFSHSGNQLDGPITALRVRVNTYYIVGLQVRYGKVWSDYVGGRNGDLEEIFLHPGESVIQVSGKYKWYLKKLVFVTDKGRYLSFGKDSGTSFNAVPLHPNTVLRFISGRSGSLIDAIGLHWDV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Zymogen granule membrane protein 16
publication title Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin
pubmed doi rcsb
source organism Homo sapiens
total genus 26
structure length 138
sequence length 138
ec nomenclature
pdb deposition date 2012-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3vzfA00
1C3NA 1ZGSA 3P8SA 3VZEA 2GUDA 1TP8A 2NUOA 3MIUA 3LL1A 2BMZA 1C3MA 4R6RA 3R50A 4AKDA 5J50A 2GUEA 1VBOA 4AKBA 4PIFA 1OUWA 3MITA 1XXRA 2BMYA 5BN6E 4AK4A 1UGYA 4R6QA 5JM1A 3VY6A 1TOQA 2GUXA 1UGYC 3LLYA 3MIVA 1KU8A 3APAA 1UH1A 2GTYA 1M26A 1UGWA 4GX7A 4R6PA 1WS5A 3VZGA 3AQGA 1UGWC 2NU5A 2JZ4A 1KUJA 3O44A 1WS5C 1X1VA 3VY7A 1C3KA 1JACA 5J51A 1J4SA 1WS4A 1JOTA 3LLZA 4DDNA 1WS4C 3VZFA 4PITA 1UH0A 4PIUA 5J4TA 3LL0A 3WOBA 5AV7A 4R6OA 1XEZA 1XXQA 5EXGA 4R6NA 5J4XA 1UGXA 1ZGRA 1J4UA 1J4TA 3R51A 4AKCA 2HYQA 4MQ0A 3LL2A 1PXDA 3WOCA 2GUCA 3R52A 3LKYA 2BN0A 4PIKA 2HYRA 3LM1A 1VBPA 4WOGA
chains in the Genus database with same CATH superfamily
1C3NA 1ZGSA 3P8SA 4MOAA 3VZEA 1DLCA 1TP8A 2GUDA 2NUOA 2QP2A 1W99A 3MIUA 4QX3A 3LL1A 2BMZA 1C3MA 4QX1A 4D8MA 4R6RA 3R50A 4AKDA 5J50A 1JI6A 2GUEA 2C9KA 1VBOA 4AKBA 4PIFA 1OUWA 4ARYA 3MITA 1XXRA 4QX0A 2BMYA 5BN6E 4AK4A 1UGYA 3TOWA 4R6QA 5JM1A 3VY6A 1TOQA 2GUXA 1UGYC 3LLYA 3MIVA 1KU8A 3APAA 1UH1A 2GTYA 1M26A 1UGWA 4GX7A 4R6PA 1WS5A 3VZGA 3AQGA 1UGWC 2NU5A 2JZ4A 1KUJA 3O44A 1WS5C 1X1VA 3VY7A 3EB7A 1C3KA 1JACA 5J51A 1J4SA 1WS4A 1JOTA 3LLZA 4DDNA 1WS4C 3VZFA 4PITA 1UH0A 4PIUA 5J4TA 3LL0A 3WOBA 4W8JA 5AV7A 4R6OA 1XEZA 1XXQA 5EXGA 4R6NA 5J4XA 4QX2A 1UGXA 1I5PA 1ZGRA 1J4UA 1J4TA 3R51A 1CIYA 4AKCA 1VMOA 2HYQA 4MQ0A 3LL2A 1PXDA 3WOCA 2GUCA 3R52A 3LKYA 2BN0A 4PIKA 2HYRA 4ARXA 3LM1A 1VBPA 4WOGA
chains in the Genus database with same CATH topology
1C3NA 1ZGSA 3P8SA 3VZEA 2GUDA 1TP8A 2NUOA 3MIUA 3LL1A 2BMZA 1C3MA 4R6RA 3R50A 4AKDA 5J50A 2GUEA 1VBOA 4AKBA 4PIFA 1OUWA 3MITA 1XXRA 2BMYA 5BN6E 4AK4A 1UGYA 4R6QA 5JM1A 3VY6A 1TOQA 2GUXA 1UGYC 3LLYA 3MIVA 1KU8A 3APAA 1UH1A 2GTYA 1M26A 1UGWA 4GX7A 4R6PA 1WS5A 3VZGA 3AQGA 1UGWC 2NU5A 2JZ4A 1KUJA 3O44A 1WS5C 1X1VA 3VY7A 1C3KA 1JACA 5J51A 1J4SA 1WS4A 1JOTA 3LLZA 4DDNA 1WS4C 3VZFA 4PITA 1UH0A 4PIUA 5J4TA 3LL0A 3WOBA 5AV7A 4R6OA 1XEZA 1XXQA 5EXGA 4R6NA 5J4XA 1UGXA 1ZGRA 1J4UA 1J4TA 3R51A 4AKCA 2HYQA 4MQ0A 3LL2A 1PXDA 3WOCA 2GUCA 3R52A 3LKYA 2BN0A 4PIKA 2HYRA 3LM1A 1VBPA 4WOGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C3N A;  1ZGS A;  3P8S A;  3VZE A;  2GUD A;  1TP8 A;  2NUO A;  3MIU A;  3LL1 A;  2BMZ A;  1C3M A;  4R6R A;  3R50 A;  4AKD A;  5J50 A;  2GUE A;  1VBO A;  4AKB A;  4PIF A;  1OUW A;  3MIT A;  1XXR A;  2BMY A;  5BN6 E;  4AK4 A;  1UGY A;  4R6Q A;  5JM1 A;  3VY6 A;  1TOQ A;  2GUX A;  1UGY C;  3LLY A;  3MIV A;  1KU8 A;  3APA A;  1UH1 A;  2GTY A;  1M26 A;  1UGW A;  4GX7 A;  4R6P A;  1WS5 A;  3VZG A;  3AQG A;  1UGW C;  2NU5 A;  2JZ4 A;  1KUJ A;  3O44 A;  1WS5 C;  1X1V A;  3VY7 A;  1C3K A;  1JAC A;  5J51 A;  1J4S A;  1WS4 A;  1JOT A;  3LLZ A;  4DDN A;  1WS4 C;  3VZF A;  4PIT A;  1UH0 A;  4PIU A;  5J4T A;  3LL0 A;  3WOB A;  5AV7 A;  4R6O A;  1XEZ A;  1XXQ A;  5EXG A;  4R6N A;  5J4X A;  1UGX A;  1ZGR A;  1J4U A;  1J4T A;  3R51 A;  4AKC A;  2HYQ A;  4MQ0 A;  3LL2 A;  1PXD A;  3WOC A;  2GUC A;  3R52 A;  3LKY A;  2BN0 A;  4PIK A;  2HYR A;  3LM1 A;  1VBP A;  4WOG A; 
#chains in the Genus database with same CATH topology
 1C3N A;  1ZGS A;  3P8S A;  4MOA A;  3VZE A;  1DLC A;  1TP8 A;  2GUD A;  2NUO A;  2QP2 A;  1W99 A;  3MIU A;  4QX3 A;  3LL1 A;  2BMZ A;  1C3M A;  4QX1 A;  4D8M A;  4R6R A;  3R50 A;  4AKD A;  5J50 A;  1JI6 A;  2GUE A;  2C9K A;  1VBO A;  4AKB A;  4PIF A;  1OUW A;  4ARY A;  3MIT A;  1XXR A;  4QX0 A;  2BMY A;  5BN6 E;  4AK4 A;  1UGY A;  3TOW A;  4R6Q A;  5JM1 A;  3VY6 A;  1TOQ A;  2GUX A;  1UGY C;  3LLY A;  3MIV A;  1KU8 A;  3APA A;  1UH1 A;  2GTY A;  1M26 A;  1UGW A;  4GX7 A;  4R6P A;  1WS5 A;  3VZG A;  3AQG A;  1UGW C;  2NU5 A;  2JZ4 A;  1KUJ A;  3O44 A;  1WS5 C;  1X1V A;  3VY7 A;  3EB7 A;  1C3K A;  1JAC A;  5J51 A;  1J4S A;  1WS4 A;  1JOT A;  3LLZ A;  4DDN A;  1WS4 C;  3VZF A;  4PIT A;  1UH0 A;  4PIU A;  5J4T A;  3LL0 A;  3WOB A;  4W8J A;  5AV7 A;  4R6O A;  1XEZ A;  1XXQ A;  5EXG A;  4R6N A;  5J4X A;  4QX2 A;  1UGX A;  1I5P A;  1ZGR A;  1J4U A;  1J4T A;  3R51 A;  1CIY A;  4AKC A;  1VMO A;  2HYQ A;  4MQ0 A;  3LL2 A;  1PXD A;  3WOC A;  2GUC A;  3R52 A;  3LKY A;  2BN0 A;  4PIK A;  2HYR A;  4ARX A;  3LM1 A;  1VBP A;  4WOG A; 
#chains in the Genus database with same CATH homology
 1C3N A;  1ZGS A;  3P8S A;  3VZE A;  2GUD A;  1TP8 A;  2NUO A;  3MIU A;  3LL1 A;  2BMZ A;  1C3M A;  4R6R A;  3R50 A;  4AKD A;  5J50 A;  2GUE A;  1VBO A;  4AKB A;  4PIF A;  1OUW A;  3MIT A;  1XXR A;  2BMY A;  5BN6 E;  4AK4 A;  1UGY A;  4R6Q A;  5JM1 A;  3VY6 A;  1TOQ A;  2GUX A;  1UGY C;  3LLY A;  3MIV A;  1KU8 A;  3APA A;  1UH1 A;  2GTY A;  1M26 A;  1UGW A;  4GX7 A;  4R6P A;  1WS5 A;  3VZG A;  3AQG A;  1UGW C;  2NU5 A;  2JZ4 A;  1KUJ A;  3O44 A;  1WS5 C;  1X1V A;  3VY7 A;  1C3K A;  1JAC A;  5J51 A;  1J4S A;  1WS4 A;  1JOT A;  3LLZ A;  4DDN A;  1WS4 C;  3VZF A;  4PIT A;  1UH0 A;  4PIU A;  5J4T A;  3LL0 A;  3WOB A;  5AV7 A;  4R6O A;  1XEZ A;  1XXQ A;  5EXG A;  4R6N A;  5J4X A;  1UGX A;  1ZGR A;  1J4U A;  1J4T A;  3R51 A;  4AKC A;  2HYQ A;  4MQ0 A;  3LL2 A;  1PXD A;  3WOC A;  2GUC A;  3R52 A;  3LKY A;  2BN0 A;  4PIK A;  2HYR A;  3LM1 A;  1VBP A;  4WOG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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