3VZUX

Crystal structure of outer membrane protein porb from neisseria meningitidis in complex with amp-pnp
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
pubmed doi rcsb
molecule keywords outer membrane protein
source organism Neisseria meningitidis
molecule tags Membrane protein
total genus 80
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vzuX00
3WI5A 2XE3A 1HXTA 1HXUA 4KR8A 4FSPA 4D64A 4FOZA 1GFOA 3SYSA 3SZDA 3POUA 3SZVA 4D5UA 2ZFGA 2J1NA 7PRNA 5DL8A 3HWBA 3POQA 5DL7A 4FRXA 3WI4A 3T20A 2Y0LA 1H6S1 3FYXA 2ZLDA 2XE5A 2QTKA 3VY8X 1GFMA 3HW9A 2O4VA 2ODJA 3T24A 2PORA 2Y2XA 1OSMA 2OMFA 2XG6A 3SYBA 1BH3A 3PORA 2XE2A 3EMNX 3VZUX 5FVNA 3JTYA 4FSOA 4GCSA 3T0SA 4FRTA 4LSEA 4RJXA 1E54A 3O0EA 4RJWA 4AUIA 1PHOA 1PRNA 4LSFA 3VZWX 5PRNA 1MPFA 1GFPA 4KRAA 2K4TA 3UPGA 2FGQX 3UU2A 4GCQA 3A2SX 2J4UP 3VZTX 3POXA 1GFNA 2Y0HA 4C69X 4D65A 5DL6A 3SY7A 5JDPA 3K19A 3PRNA 1BT9A 6PRNA 8PRNA 2FGRA 4LSIA 2PRNA 4FT6A 4LSHA 2Y0KA 4FMSA 1GFQA 4JFBA 5DL5A 2XE1A 3VY9X 4GCPA 4BUMX 1OPFA 4KR4A 1HXXA 3SY9A 3NSGA
chains in the Genus database with same CATH superfamily
3WI5A 4O3XB 5G39A 2KDYA 2XE3A 1HXTA 2WJRA 1HXUA 3AA7A 4KR8A 2KXPA 4C4VB 4FSPA 4O49A 2X9KA 4D64A 4FOZA 3PQSA 4FUVA 3AAEB 1GFOA 2M07A 3LK41 4O3WA 2XTQA 4G75A 5GV0A 3LK2B 3SYSA 3SZDA 3PF1A 3POUA 3SZVA 3AA6A 3C5OA 4D5UA 2ZFGA 2J1NA 3DA4A 3PGSA 1QJ9A 2R4PA 4AYDC 4AYNA 7PRNA 5DL8A 3AAAB 3HWBA 2XMXA 4CTDA 3A0HO 2AXTO 5KAIO 2Y7SA 3POQA 4FRXA 4N59A 1THQA 5DL7A 1BXWA 2R4NA 2Y0LA 5KAFO 3WI4A 4AYMC 1H6S1 3FYXA 3DWOX 4XNKA 2XE5A 2ZLDA 5AFUL 2X27X 3BRYA 2N2MA 4GHBA 1MM4A 1T1LA 3AA0B 2ERVA 2K0LA 1S5LO 1ZHWA 2M06A 1GFMA 1Q9GA 2F1VA 2O4VA 2QTKA 3HW9A 2ODJA 1QJPA 3PGUA 5D5DA 3NJTA 1ZHZA 4AKRB 1IZNB 3T24A 4AFKA 3GP6A 2PORA 2Y2XA 2R4OA 1OSMA 2LHFA 3AA7B 3G7GA 2W81C 2KXPB 2OMFA 3DZMA 5EE2A 4O4XA 2XG6A 4RLCA 1P4TA 4IL6O 1BH3A 1QJ8A 3PORA 3RBHA 3SYBA 4B61A 2YNKA 2XE2A 4K3BA 3EMNX 3VZUX 5ADXL 5FVNA 3DA3A 4E1TA 4AYID 1YS5A 5TISO 3TZGA 3JTYA 5B66O 4FSOA 4RL9A 2W80C 3AA6B 3HOEA 3V8UA 4GCSA 1Q9FA 3LK3A 4N74A 3T0SA 4RLBA 2N2LA 4FRTA 4N58A 2WJQA 2R88A 2WVPA 4AZLA 4LSEA 4UB6O 3HOLA 4RJXA 1E54A 4O3YA 3O0EA 2JQYA 4RJWA 3VE2A 4F4BA 1ZHYA 4U9CA 3BS0A 2KC0A 4UB8O 4AUIA 2XTRA 1PHOA 2R4LA 1PRNA 3QRCA 2LFUA 4O3ZA 4PR7A 5GTHO 3DWNA 5AFUK 1ZHXA 4LSFA 3AA1A 3VZWX 4Z3TA 5PRNA 4JCHA 5H2FO 2F1TA 1MPFA 1GFPA 4FZLA 5E79O 3KVDD 2F1CX 4KRAA 4N75A 2K4TA 3BRZA 4AYEC 2FGQX 4PUXA 3UPGA 2KZ7A 4PJ0O 3UU2A 4GCQA 3A2SX 2IWWA 2MHLA 3AAEA 2J4UP 2R8AA 3VZTX 3POXA 1GFNA 2KZ7B 3LK2A 4GF4A 2MNHA 5IYUA 4FZMA 3QRAA 4K3CA 1ORMA 4FZNA 3A0BO 3T20A 1MM5A 2R89A 3LK3B 2Y0HA 4QQ1A 5ADXK 5G26A 4AKMA 2GE4A 5GTIO 5T5FA 4C69X 4D65A 3AAAA 1G90A 5DL6A 3SY7A 5JDPA 3K19A 3KZIO 3PRNA 1T16A 5B5EO 3UAQA 1BT9A 6PRNA 8PRNA 2FGRA 4LSIA 4FESA 2PRNA 2IWVA 3PQUA 4FT6A 4LSHA 2Y0KA 3PGRA 4C00A 4FMSA 2JMMA 1ZHTA 1GFQA 2YPVA 4XNLA 4G76A 4JFBA 3VE1A 3AA0A 5DL5A 2XE1A 3VY9X 3LK42 4C4VA 5G3AA 3WU2O 4GCPA 4BUMX 1OPFA 4KR4A 4FQEA 1HXXA 3JCUO 4O4UA 3AA1B 4E1SA 4AKRA 5G38A 3VY8X 1IZNA 3SY9A 3NSGA
chains in the Genus database with same CATH topology
3WI5A 4O3XB 2KDYA 2XE3A 1HXTA 1HXUA 3AA7A 4KR8A 2KXPA 4FSPA 4O49A 4D64A 4FOZA 3PQSA 4FUVA 3AAEB 1GFOA 2M07A 3LK41 4O3WA 2XTQA 4G75A 5GV0A 3LK2B 3SYSA 3SZDA 3POUA 3SZVA 3AA6A 3C5OA 4D5UA 2ZFGA 2J1NA 3DA4A 7PRNA 1QJ9A 4AYDC 4AYNA 5DL8A 3AAAB 3HWBA 2XMXA 2Y7SA 3POQA 4FRXA 4N59A 1THQA 5DL7A 1BXWA 2Y0LA 3WI4A 4AYMC 1H6S1 3FYXA 4XNKA 2XE5A 2ZLDA 5AFUL 2X27X 2N2MA 4GHBA 1MM4A 3AA0B 3VE2A 2ERVA 2K0LA 1ZHWA 2M06A 2QTKA 1GFMA 1Q9GA 2F1VA 2O4VA 3HW9A 3VY8X 2ODJA 1QJPA 5D5DA 1ZHZA 4AKRB 1IZNB 3T24A 4AFKA 3GP6A 2PORA 2Y2XA 1OSMA 2LHFA 3AA7B 3G7GA 2W81C 2KXPB 2OMFA 5EE2A 4O4XA 2XG6A 4RLCA 1P4TA 3SYBA 1BH3A 1QJ8A 3PORA 3RBHA 4B61A 2YNKA 2XE2A 3EMNX 3VZUX 5ADXL 5FVNA 3DA3A 4E1TA 4AYID 1YS5A 3TZGA 3JTYA 4FSOA 4RL9A 2W80C 3AA6B 3HOEA 3V8UA 4GCSA 1Q9FA 3LK3A 3T0SA 4RLBA 2N2LA 4FRTA 4N58A 4AZLA 4LSEA 3HOLA 4RJXA 1E54A 4O3YA 3O0EA 4RJWA 4F4BA 1ZHYA 4U9CA 2KC0A 4AUIA 2XTRA 1PHOA 1PRNA 3QRCA 2LFUA 4O3ZA 5AFUK 1ZHXA 4LSFA 3AA1A 3VZWX 4Z3TA 5PRNA 4JCHA 2F1TA 1MPFA 1GFPA 4FZLA 3KVDD 4KRAA 2K4TA 4AYEC 2FGQX 4PUXA 3UPGA 2KZ7A 3UU2A 4GCQA 3A2SX 2MHLA 3AAEA 2J4UP 3VZTX 3POXA 1GFNA 2KZ7B 3LK2A 4GF4A 2MNHA 5IYUA 4FZMA 3QRAA 1ORMA 4FZNA 3T20A 1MM5A 3LK3B 2Y0HA 4QQ1A 5ADXK 5G26A 4AKMA 2GE4A 4C69X 5T5FA 4D65A 1G90A 3AAAA 5DL6A 3SY7A 5JDPA 3K19A 3PRNA 3UAQA 1BT9A 6PRNA 8PRNA 2FGRA 4LSIA 4FESA 2PRNA 3PQUA 4FT6A 4LSHA 2Y0KA 4FMSA 2JMMA 1ZHTA 1GFQA 2YPVA 4XNLA 4G76A 4JFBA 3VE1A 3AA0A 5DL5A 2XE1A 3VY9X 3LK42 4GCPA 4BUMX 1OPFA 4KR4A 4O4UA 1HXXA 4E1SA 3AA1B 4AKRA 1IZNA 3SY9A 3NSGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WI5 A;  2XE3 A;  1HXT A;  1HXU A;  4KR8 A;  4FSP A;  4D64 A;  4FOZ A;  1GFO A;  3SYS A;  3SZD A;  3POU A;  3SZV A;  4D5U A;  2ZFG A;  2J1N A;  7PRN A;  5DL8 A;  3HWB A;  3POQ A;  5DL7 A;  4FRX A;  3WI4 A;  3T20 A;  2Y0L A;  1H6S 1;  3FYX A;  2ZLD A;  2XE5 A;  2QTK A;  3VY8 X;  1GFM A;  3HW9 A;  2O4V A;  2ODJ A;  3T24 A;  2POR A;  2Y2X A;  1OSM A;  2OMF A;  2XG6 A;  3SYB A;  1BH3 A;  3POR A;  2XE2 A;  3EMN X;  3VZU X;  5FVN A;  3JTY A;  4FSO A;  4GCS A;  3T0S A;  4FRT A;  4LSE A;  4RJX A;  1E54 A;  3O0E A;  4RJW A;  4AUI A;  1PHO A;  1PRN A;  4LSF A;  3VZW X;  5PRN A;  1MPF A;  1GFP A;  4KRA A;  2K4T A;  3UPG A;  2FGQ X;  3UU2 A;  4GCQ A;  3A2S X;  2J4U P;  3VZT X;  3POX A;  1GFN A;  2Y0H A;  4C69 X;  4D65 A;  5DL6 A;  3SY7 A;  5JDP A;  3K19 A;  3PRN A;  1BT9 A;  6PRN A;  8PRN A;  2FGR A;  4LSI A;  2PRN A;  4FT6 A;  4LSH A;  2Y0K A;  4FMS A;  1GFQ A;  4JFB A;  5DL5 A;  2XE1 A;  3VY9 X;  4GCP A;  4BUM X;  1OPF A;  4KR4 A;  1HXX A;  3SY9 A;  3NSG A; 
#chains in the Genus database with same CATH topology
 3WI5 A;  4O3X B;  5G39 A;  2KDY A;  2XE3 A;  1HXT A;  2WJR A;  1HXU A;  3AA7 A;  4KR8 A;  2KXP A;  4C4V B;  4FSP A;  4O49 A;  2X9K A;  4D64 A;  4FOZ A;  3PQS A;  4FUV A;  3AAE B;  1GFO A;  2M07 A;  3LK4 1;  4O3W A;  2XTQ A;  4G75 A;  5GV0 A;  3LK2 B;  3SYS A;  3SZD A;  3PF1 A;  3POU A;  3SZV A;  3AA6 A;  3C5O A;  4D5U A;  2ZFG A;  2J1N A;  3DA4 A;  3PGS A;  1QJ9 A;  2R4P A;  4AYD C;  4AYN A;  7PRN A;  5DL8 A;  3AAA B;  3HWB A;  2XMX A;  4CTD A;  3A0H O;  2AXT O;  5KAI O;  2Y7S A;  3POQ A;  4FRX A;  4N59 A;  1THQ A;  5DL7 A;  1BXW A;  2R4N A;  2Y0L A;  5KAF O;  3WI4 A;  4AYM C;  1H6S 1;  3FYX A;  3DWO X;  4XNK A;  2XE5 A;  2ZLD A;  5AFU L;  2X27 X;  3BRY A;  2N2M A;  4GHB A;  1MM4 A;  1T1L A;  3AA0 B;  2ERV A;  2K0L A;  1S5L O;  1ZHW A;  2M06 A;  1GFM A;  1Q9G A;  2F1V A;  2O4V A;  2QTK A;  3HW9 A;  2ODJ A;  1QJP A;  3PGU A;  5D5D A;  3NJT A;  1ZHZ A;  4AKR B;  1IZN B;  3T24 A;  4AFK A;  3GP6 A;  2POR A;  2Y2X A;  2R4O A;  1OSM A;  2LHF A;  3AA7 B;  3G7G A;  2W81 C;  2KXP B;  2OMF A;  3DZM A;  5EE2 A;  4O4X A;  2XG6 A;  4RLC A;  1P4T A;  4IL6 O;  1BH3 A;  1QJ8 A;  3POR A;  3RBH A;  3SYB A;  4B61 A;  2YNK A;  2XE2 A;  4K3B A;  3EMN X;  3VZU X;  5ADX L;  5FVN A;  3DA3 A;  4E1T A;  4AYI D;  1YS5 A;  5TIS O;  3TZG A;  3JTY A;  5B66 O;  4FSO A;  4RL9 A;  2W80 C;  3AA6 B;  3HOE A;  3V8U A;  4GCS A;  1Q9F A;  3LK3 A;  4N74 A;  3T0S A;  4RLB A;  2N2L A;  4FRT A;  4N58 A;  2WJQ A;  2R88 A;  2WVP A;  4AZL A;  4LSE A;  4UB6 O;  3HOL A;  4RJX A;  1E54 A;  4O3Y A;  3O0E A;  2JQY A;  4RJW A;  3VE2 A;  4F4B A;  1ZHY A;  4U9C A;  3BS0 A;  2KC0 A;  4UB8 O;  4AUI A;  2XTR A;  1PHO A;  2R4L A;  1PRN A;  3QRC A;  2LFU A;  4O3Z A;  4PR7 A;  5GTH O;  3DWN A;  5AFU K;  1ZHX A;  4LSF A;  3AA1 A;  3VZW X;  4Z3T A;  5PRN A;  4JCH A;  5H2F O;  2F1T A;  1MPF A;  1GFP A;  4FZL A;  5E79 O;  3KVD D;  2F1C X;  4KRA A;  4N75 A;  2K4T A;  3BRZ A;  4AYE C;  2FGQ X;  4PUX A;  3UPG A;  2KZ7 A;  4PJ0 O;  3UU2 A;  4GCQ A;  3A2S X;  2IWW A;  2MHL A;  3AAE A;  2J4U P;  2R8A A;  3VZT X;  3POX A;  1GFN A;  2KZ7 B;  3LK2 A;  4GF4 A;  2MNH A;  5IYU A;  4FZM A;  3QRA A;  4K3C A;  1ORM A;  4FZN A;  3A0B O;  3T20 A;  1MM5 A;  2R89 A;  3LK3 B;  2Y0H A;  4QQ1 A;  5ADX K;  5G26 A;  4AKM A;  2GE4 A;  5GTI O;  5T5F A;  4C69 X;  4D65 A;  3AAA A;  1G90 A;  5DL6 A;  3SY7 A;  5JDP A;  3K19 A;  3KZI O;  3PRN A;  1T16 A;  5B5E O;  3UAQ A;  1BT9 A;  6PRN A;  8PRN A;  2FGR A;  4LSI A;  4FES A;  2PRN A;  2IWV A;  3PQU A;  4FT6 A;  4LSH A;  2Y0K A;  3PGR A;  4C00 A;  4FMS A;  2JMM A;  1ZHT A;  1GFQ A;  2YPV A;  4XNL A;  4G76 A;  4JFB A;  3VE1 A;  3AA0 A;  5DL5 A;  2XE1 A;  3VY9 X;  3LK4 2;  4C4V A;  5G3A A;  3WU2 O;  4GCP A;  4BUM X;  1OPF A;  4KR4 A;  4FQE A;  1HXX A;  3JCU O;  4O4U A;  3AA1 B;  4E1S A;  4AKR A;  5G38 A;  3VY8 X;  1IZN A;  3SY9 A;  3NSG A; 
#chains in the Genus database with same CATH homology
 3WI5 A;  4O3X B;  2KDY A;  2XE3 A;  1HXT A;  1HXU A;  3AA7 A;  4KR8 A;  2KXP A;  4FSP A;  4O49 A;  4D64 A;  4FOZ A;  3PQS A;  4FUV A;  3AAE B;  1GFO A;  2M07 A;  3LK4 1;  4O3W A;  2XTQ A;  4G75 A;  5GV0 A;  3LK2 B;  3SYS A;  3SZD A;  3POU A;  3SZV A;  3AA6 A;  3C5O A;  4D5U A;  2ZFG A;  2J1N A;  3DA4 A;  7PRN A;  1QJ9 A;  4AYD C;  4AYN A;  5DL8 A;  3AAA B;  3HWB A;  2XMX A;  2Y7S A;  3POQ A;  4FRX A;  4N59 A;  1THQ A;  5DL7 A;  1BXW A;  2Y0L A;  3WI4 A;  4AYM C;  1H6S 1;  3FYX A;  4XNK A;  2XE5 A;  2ZLD A;  5AFU L;  2X27 X;  2N2M A;  4GHB A;  1MM4 A;  3AA0 B;  3VE2 A;  2ERV A;  2K0L A;  1ZHW A;  2M06 A;  2QTK A;  1GFM A;  1Q9G A;  2F1V A;  2O4V A;  3HW9 A;  3VY8 X;  2ODJ A;  1QJP A;  5D5D A;  1ZHZ A;  4AKR B;  1IZN B;  3T24 A;  4AFK A;  3GP6 A;  2POR A;  2Y2X A;  1OSM A;  2LHF A;  3AA7 B;  3G7G A;  2W81 C;  2KXP B;  2OMF A;  5EE2 A;  4O4X A;  2XG6 A;  4RLC A;  1P4T A;  3SYB A;  1BH3 A;  1QJ8 A;  3POR A;  3RBH A;  4B61 A;  2YNK A;  2XE2 A;  3EMN X;  3VZU X;  5ADX L;  5FVN A;  3DA3 A;  4E1T A;  4AYI D;  1YS5 A;  3TZG A;  3JTY A;  4FSO A;  4RL9 A;  2W80 C;  3AA6 B;  3HOE A;  3V8U A;  4GCS A;  1Q9F A;  3LK3 A;  3T0S A;  4RLB A;  2N2L A;  4FRT A;  4N58 A;  4AZL A;  4LSE A;  3HOL A;  4RJX A;  1E54 A;  4O3Y A;  3O0E A;  4RJW A;  4F4B A;  1ZHY A;  4U9C A;  2KC0 A;  4AUI A;  2XTR A;  1PHO A;  1PRN A;  3QRC A;  2LFU A;  4O3Z A;  5AFU K;  1ZHX A;  4LSF A;  3AA1 A;  3VZW X;  4Z3T A;  5PRN A;  4JCH A;  2F1T A;  1MPF A;  1GFP A;  4FZL A;  3KVD D;  4KRA A;  2K4T A;  4AYE C;  2FGQ X;  4PUX A;  3UPG A;  2KZ7 A;  3UU2 A;  4GCQ A;  3A2S X;  2MHL A;  3AAE A;  2J4U P;  3VZT X;  3POX A;  1GFN A;  2KZ7 B;  3LK2 A;  4GF4 A;  2MNH A;  5IYU A;  4FZM A;  3QRA A;  1ORM A;  4FZN A;  3T20 A;  1MM5 A;  3LK3 B;  2Y0H A;  4QQ1 A;  5ADX K;  5G26 A;  4AKM A;  2GE4 A;  4C69 X;  5T5F A;  4D65 A;  1G90 A;  3AAA A;  5DL6 A;  3SY7 A;  5JDP A;  3K19 A;  3PRN A;  3UAQ A;  1BT9 A;  6PRN A;  8PRN A;  2FGR A;  4LSI A;  4FES A;  2PRN A;  3PQU A;  4FT6 A;  4LSH A;  2Y0K A;  4FMS A;  2JMM A;  1ZHT A;  1GFQ A;  2YPV A;  4XNL A;  4G76 A;  4JFB A;  3VE1 A;  3AA0 A;  5DL5 A;  2XE1 A;  3VY9 X;  3LK4 2;  4GCP A;  4BUM X;  1OPF A;  4KR4 A;  4O4U A;  1HXX A;  4E1S A;  3AA1 B;  4AKR A;  1IZN A;  3SY9 A;  3NSG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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