3VZUX

Crystal structure of outer membrane protein porb from neisseria meningitidis in complex with amp-pnp
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords outer membrane protein
publication title Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Membrane protein
total genus 80
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vzuX00
4FSPA 4RJWA 4FOZA 4JFBA 4LSEA 3T0SA 2FGRA 3VZWX 4KR8A 3SZVA 5DL8A 3SYBA 3A2SX 4AUIA 3K19A 2ZLDA 5PRNA 5DL6A 2XE5A 3NSGA 1BT9A 3SZDA 2FGQX 6PRNA 3T20A 4GCQA 2PORA 3SY7A 1HXXA 4KR4A 3UPGA 4BUMX 3VZTX 1MPFA 3POQA 2XE1A 4LSFA 1GFMA 3VY8X 2K4TA 3VZUX 4RJXA 4FSOA 4FRXA 4FT6A 3SY9A 3POUA 2Y2XA 2XE3A 3PORA 4GCSA 3VY9X 3WI5A 4D64A 4D5UA 4FMSA 4GCPA 4D65A 2J1NA 3JTYA 2O4VA 3WI4A 2XG6A 1BH3A 3T24A 2J4UP 1GFOA 8PRNA 2QTKA 3HWBA 1OPFA 1HXUA 4LSIA 2Y0KA 1OSMA 3HW9A 1GFNA 5FVNA 5DL7A 3SYSA 1H6S1 1GFQA 2OMFA 2ZFGA 3O0EA 4KRAA 3FYXA 4C69X 2Y0LA 1E54A 1GFPA 3PRNA 3UU2A 2PRNA 2XE2A 1PRNA 5DL5A 4FRTA 1PHOA 7PRNA 3EMNX 1HXTA 5JDPA 2Y0HA 3POXA 2ODJA 4LSHA
chains in the Genus database with same CATH superfamily
4FSPA 4RJWA 5H2FO 3AAEA 1MM4A 1ZHYA 3PQSA 2K0LA 4N75A 4FOZA 4JFBA 4LSEA 2LHFA 2FGRA 3PGSA 4O49A 3T0SA 1P4TA 3VZWX 4KR8A 2N2MA 2R8AA 4E1TA 4FZLA 3SZVA 3GP6A 1MM5A 4GHBA 4O4UA 4PJ0O 4UB6O 2KZ7B 5DL8A 4AYMC 2F1CX 5EE2A 3VE2A 2LFUA 2R88A 2R4PA 3A2SX 5T5FA 3RBHA 3AA1A 3SYBA 4AUIA 2W80C 3LK41 3K19A 2MHLA 2ERVA 3BRZA 4C00A 4CTDA 3QRCA 4C4VA 3A0BO 3DA4A 5KAFO 2ZLDA 4AYDC 5B66O 5ADXK 4E1SA 5PRNA 4XNLA 3DWNA 2XTQA 5DL6A 1BXWA 2XE5A 4FZMA 1QJPA 1BT9A 3NSGA 4O3XB 1ZHXA 3UAQA 3SZDA 5IYUA 3AA0A 2FGQX 2XMXA 4FZNA 4Z3TA 6PRNA 2KXPA 2R4OA 3VE1A 3T20A 2WVPA 4GCQA 2KC0A 2M06A 2PORA 3SY7A 3KVDD 1HXXA 2M07A 3AA6B 3PF1A 4KR4A 4XNKA 5G38A 4B61A 3UPGA 1T16A 2X27X 2X9KA 4BUMX 3PGRA 3AA7B 3VZTX 1Q9FA 2IWWA 5ADXL 1MPFA 3POQA 4O3ZA 5TISO 4O4XA 5GV0A 1YS5A 2XE1A 4G76A 2KZ7A 4RLCA 1QJ9A 1GFMA 3DZMA 2K4TA 2YPVA 3LK3B 2WJRA 4LSFA 4PUXA 3VY8X 3VZUX 3BRYA 4RJXA 1ZHTA 3LK42 4FSOA 4FRXA 4K3BA 4QQ1A 2F1TA 1ZHZA 5AFUL 4FT6A 2AXTO 4K3CA 2JMMA 3SY9A 1IZNB 5GTHO 2N2LA 4AYID 2YNKA 3POUA 5KAIO 2Y2XA 2XE3A 3PORA 1IZNA 4GCSA 3VY9X 3WI5A 3PQUA 5AFUK 3DA3A 3QRAA 4D64A 4F4BA 1THQA 4D5UA 3LK2B 2MNHA 4G75A 4FMSA 4N58A 3BS0A 2F1VA 4GCPA 4UB8O 3WU2O 3AAAB 4GF4A 5G26A 4D65A 1QJ8A 2J1NA 3JTYA 2O4VA 3WI4A 2XG6A 1S5LO 3AA6A 1BH3A 4U9CA 4FQEA 5G3AA 3T24A 2J4UP 3JCUO 4IL6O 1T1LA 1GFOA 3AA7A 8PRNA 2QTKA 3HWBA 3A0HO 2R4LA 4FUVA 1OPFA 2GE4A 2IWVA 2XTRA 1HXUA 4O3WA 4AYNA 5D5DA 3AAEB 4LSIA 1G90A 3LK3A 4AKMA 2Y0KA 4O3YA 4AYEC 4AKRB 3PGUA 3HOEA 1OSMA 3HW9A 3KZIO 4N74A 3TZGA 5B5EO 1GFNA 2W81C 2WJQA 5FVNA 2R89A 4AZLA 5DL7A 5E79O 3SYSA 1H6S1 3NJTA 2JQYA 1GFQA 2OMFA 2R4NA 2ZFGA 3AA1B 1ORMA 3O0EA 4KRAA 5G39A 4AKRA 3FYXA 4RL9A 3DWOX 2Y0LA 3LK2A 4C69X 1E54A 4C4VB 1GFPA 3HOLA 4N59A 3V8UA 4AFKA 3AAAA 3PRNA 3UU2A 4PR7A 2PRNA 2XE2A 1ZHWA 3G7GA 1PRNA 5DL5A 3C5OA 4FRTA 5GTIO 3AA0B 1PHOA 4FESA 7PRNA 2KXPB 4JCHA 3EMNX 4RLBA 1HXTA 1Q9GA 2KDYA 2Y7SA 5JDPA 2Y0HA 3POXA 2ODJA 4LSHA
chains in the Genus database with same CATH topology
4FSPA 4RJWA 3AAEA 1MM4A 1ZHYA 3PQSA 2K0LA 4FOZA 4JFBA 4LSEA 2LHFA 2FGRA 4O49A 3T0SA 3VZWX 1P4TA 4AKRA 4KR8A 2N2MA 4E1TA 4FZLA 3SZVA 3GP6A 1MM5A 4GHBA 4O4UA 4AYMC 2KZ7B 5DL8A 5EE2A 3VE2A 2LFUA 3SYBA 3A2SX 5T5FA 3RBHA 3AA1A 4AUIA 2W80C 3LK41 3K19A 2MHLA 2ERVA 3QRCA 3DA4A 2ZLDA 4AYDC 5ADXK 4E1SA 5PRNA 4XNLA 2XTQA 5DL6A 1BXWA 2XE5A 4FZMA 1QJPA 1BT9A 3NSGA 4O3XB 1ZHXA 3UAQA 3SZDA 5IYUA 3AA0A 2XMXA 2FGQX 4FZNA 4Z3TA 6PRNA 2KXPA 3VE1A 3T20A 4GCQA 2KC0A 2M06A 2PORA 3SY7A 3KVDD 1HXXA 2M07A 3AA6B 4KR4A 4XNKA 4B61A 3UPGA 2X27X 4BUMX 3AA7B 3VZTX 1Q9FA 5ADXL 1MPFA 3POQA 4O3ZA 5GV0A 4O4XA 1YS5A 2XE1A 4G76A 2KZ7A 4RLCA 1QJ9A 1GFMA 4LSFA 2K4TA 2YPVA 3LK3B 4PUXA 3VY8X 3VZUX 4RJXA 1ZHTA 3LK42 4FSOA 4FRXA 4QQ1A 2F1TA 1ZHZA 5AFUL 4FT6A 2JMMA 3SY9A 1IZNB 2N2LA 4AYID 2YNKA 3POUA 2Y2XA 2XE3A 3PORA 1IZNA 4GCSA 3VY9X 3WI5A 3PQUA 5AFUK 3DA3A 3QRAA 4D64A 4F4BA 1THQA 4D5UA 3LK2B 2MNHA 4G75A 4FMSA 4N58A 4GCPA 2F1VA 3AAAB 4GF4A 5G26A 4D65A 1QJ8A 2J1NA 3JTYA 2O4VA 3WI4A 2XG6A 3AA6A 1BH3A 4U9CA 3T24A 2J4UP 1GFOA 3AA7A 8PRNA 2QTKA 3HWBA 4FUVA 1OPFA 2GE4A 2XTRA 4O3WA 1HXUA 4AYNA 5D5DA 3AAEB 4LSIA 1G90A 3LK3A 4AKMA 2Y0KA 4O3YA 4AYEC 4AKRB 3HOEA 1OSMA 3HW9A 3TZGA 1GFNA 2W81C 5FVNA 4AZLA 5DL7A 3SYSA 1H6S1 1GFQA 2OMFA 2ZFGA 3AA1B 3O0EA 1ORMA 4KRAA 3FYXA 4RL9A 4C69X 2Y0LA 3LK2A 1E54A 1GFPA 3HOLA 4N59A 3V8UA 4AFKA 3AAAA 3PRNA 3UU2A 2PRNA 2XE2A 1ZHWA 3G7GA 1PRNA 5DL5A 3C5OA 4FRTA 3AA0B 1PHOA 4FESA 7PRNA 2KXPB 4JCHA 3EMNX 4RLBA 1HXTA 1Q9GA 2KDYA 2Y7SA 5JDPA 2Y0HA 3POXA 2ODJA 4LSHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FSP A;  4RJW A;  4FOZ A;  4JFB A;  4LSE A;  3T0S A;  2FGR A;  3VZW X;  4KR8 A;  3SZV A;  5DL8 A;  3SYB A;  3A2S X;  4AUI A;  3K19 A;  2ZLD A;  5PRN A;  5DL6 A;  2XE5 A;  3NSG A;  1BT9 A;  3SZD A;  2FGQ X;  6PRN A;  3T20 A;  4GCQ A;  2POR A;  3SY7 A;  1HXX A;  4KR4 A;  3UPG A;  4BUM X;  3VZT X;  1MPF A;  3POQ A;  2XE1 A;  4LSF A;  1GFM A;  3VY8 X;  2K4T A;  3VZU X;  4RJX A;  4FSO A;  4FRX A;  4FT6 A;  3SY9 A;  3POU A;  2Y2X A;  2XE3 A;  3POR A;  4GCS A;  3VY9 X;  3WI5 A;  4D64 A;  4D5U A;  4FMS A;  4GCP A;  4D65 A;  2J1N A;  3JTY A;  2O4V A;  3WI4 A;  2XG6 A;  1BH3 A;  3T24 A;  2J4U P;  1GFO A;  8PRN A;  2QTK A;  3HWB A;  1OPF A;  1HXU A;  4LSI A;  2Y0K A;  1OSM A;  3HW9 A;  1GFN A;  5FVN A;  5DL7 A;  3SYS A;  1H6S 1;  1GFQ A;  2OMF A;  2ZFG A;  3O0E A;  4KRA A;  3FYX A;  4C69 X;  2Y0L A;  1E54 A;  1GFP A;  3PRN A;  3UU2 A;  2PRN A;  2XE2 A;  1PRN A;  5DL5 A;  4FRT A;  1PHO A;  7PRN A;  3EMN X;  1HXT A;  5JDP A;  2Y0H A;  3POX A;  2ODJ A;  4LSH A; 
#chains in the Genus database with same CATH topology
 4FSP A;  4RJW A;  5H2F O;  3AAE A;  1MM4 A;  1ZHY A;  3PQS A;  2K0L A;  4N75 A;  4FOZ A;  4JFB A;  4LSE A;  2LHF A;  2FGR A;  3PGS A;  4O49 A;  3T0S A;  1P4T A;  3VZW X;  4KR8 A;  2N2M A;  2R8A A;  4E1T A;  4FZL A;  3SZV A;  3GP6 A;  1MM5 A;  4GHB A;  4O4U A;  4PJ0 O;  4UB6 O;  2KZ7 B;  5DL8 A;  4AYM C;  2F1C X;  5EE2 A;  3VE2 A;  2LFU A;  2R88 A;  2R4P A;  3A2S X;  5T5F A;  3RBH A;  3AA1 A;  3SYB A;  4AUI A;  2W80 C;  3LK4 1;  3K19 A;  2MHL A;  2ERV A;  3BRZ A;  4C00 A;  4CTD A;  3QRC A;  4C4V A;  3A0B O;  3DA4 A;  5KAF O;  2ZLD A;  4AYD C;  5B66 O;  5ADX K;  4E1S A;  5PRN A;  4XNL A;  3DWN A;  2XTQ A;  5DL6 A;  1BXW A;  2XE5 A;  4FZM A;  1QJP A;  1BT9 A;  3NSG A;  4O3X B;  1ZHX A;  3UAQ A;  3SZD A;  5IYU A;  3AA0 A;  2FGQ X;  2XMX A;  4FZN A;  4Z3T A;  6PRN A;  2KXP A;  2R4O A;  3VE1 A;  3T20 A;  2WVP A;  4GCQ A;  2KC0 A;  2M06 A;  2POR A;  3SY7 A;  3KVD D;  1HXX A;  2M07 A;  3AA6 B;  3PF1 A;  4KR4 A;  4XNK A;  5G38 A;  4B61 A;  3UPG A;  1T16 A;  2X27 X;  2X9K A;  4BUM X;  3PGR A;  3AA7 B;  3VZT X;  1Q9F A;  2IWW A;  5ADX L;  1MPF A;  3POQ A;  4O3Z A;  5TIS O;  4O4X A;  5GV0 A;  1YS5 A;  2XE1 A;  4G76 A;  2KZ7 A;  4RLC A;  1QJ9 A;  1GFM A;  3DZM A;  2K4T A;  2YPV A;  3LK3 B;  2WJR A;  4LSF A;  4PUX A;  3VY8 X;  3VZU X;  3BRY A;  4RJX A;  1ZHT A;  3LK4 2;  4FSO A;  4FRX A;  4K3B A;  4QQ1 A;  2F1T A;  1ZHZ A;  5AFU L;  4FT6 A;  2AXT O;  4K3C A;  2JMM A;  3SY9 A;  1IZN B;  5GTH O;  2N2L A;  4AYI D;  2YNK A;  3POU A;  5KAI O;  2Y2X A;  2XE3 A;  3POR A;  1IZN A;  4GCS A;  3VY9 X;  3WI5 A;  3PQU A;  5AFU K;  3DA3 A;  3QRA A;  4D64 A;  4F4B A;  1THQ A;  4D5U A;  3LK2 B;  2MNH A;  4G75 A;  4FMS A;  4N58 A;  3BS0 A;  2F1V A;  4GCP A;  4UB8 O;  3WU2 O;  3AAA B;  4GF4 A;  5G26 A;  4D65 A;  1QJ8 A;  2J1N A;  3JTY A;  2O4V A;  3WI4 A;  2XG6 A;  1S5L O;  3AA6 A;  1BH3 A;  4U9C A;  4FQE A;  5G3A A;  3T24 A;  2J4U P;  3JCU O;  4IL6 O;  1T1L A;  1GFO A;  3AA7 A;  8PRN A;  2QTK A;  3HWB A;  3A0H O;  2R4L A;  4FUV A;  1OPF A;  2GE4 A;  2IWV A;  2XTR A;  1HXU A;  4O3W A;  4AYN A;  5D5D A;  3AAE B;  4LSI A;  1G90 A;  3LK3 A;  4AKM A;  2Y0K A;  4O3Y A;  4AYE C;  4AKR B;  3PGU A;  3HOE A;  1OSM A;  3HW9 A;  3KZI O;  4N74 A;  3TZG A;  5B5E O;  1GFN A;  2W81 C;  2WJQ A;  5FVN A;  2R89 A;  4AZL A;  5DL7 A;  5E79 O;  3SYS A;  1H6S 1;  3NJT A;  2JQY A;  1GFQ A;  2OMF A;  2R4N A;  2ZFG A;  3AA1 B;  1ORM A;  3O0E A;  4KRA A;  5G39 A;  4AKR A;  3FYX A;  4RL9 A;  3DWO X;  2Y0L A;  3LK2 A;  4C69 X;  1E54 A;  4C4V B;  1GFP A;  3HOL A;  4N59 A;  3V8U A;  4AFK A;  3AAA A;  3PRN A;  3UU2 A;  4PR7 A;  2PRN A;  2XE2 A;  1ZHW A;  3G7G A;  1PRN A;  5DL5 A;  3C5O A;  4FRT A;  5GTI O;  3AA0 B;  1PHO A;  4FES A;  7PRN A;  2KXP B;  4JCH A;  3EMN X;  4RLB A;  1HXT A;  1Q9G A;  2KDY A;  2Y7S A;  5JDP A;  2Y0H A;  3POX A;  2ODJ A;  4LSH A; 
#chains in the Genus database with same CATH homology
 4FSP A;  4RJW A;  3AAE A;  1MM4 A;  1ZHY A;  3PQS A;  2K0L A;  4FOZ A;  4JFB A;  4LSE A;  2LHF A;  2FGR A;  4O49 A;  3T0S A;  3VZW X;  1P4T A;  4AKR A;  4KR8 A;  2N2M A;  4E1T A;  4FZL A;  3SZV A;  3GP6 A;  1MM5 A;  4GHB A;  4O4U A;  4AYM C;  2KZ7 B;  5DL8 A;  5EE2 A;  3VE2 A;  2LFU A;  3SYB A;  3A2S X;  5T5F A;  3RBH A;  3AA1 A;  4AUI A;  2W80 C;  3LK4 1;  3K19 A;  2MHL A;  2ERV A;  3QRC A;  3DA4 A;  2ZLD A;  4AYD C;  5ADX K;  4E1S A;  5PRN A;  4XNL A;  2XTQ A;  5DL6 A;  1BXW A;  2XE5 A;  4FZM A;  1QJP A;  1BT9 A;  3NSG A;  4O3X B;  1ZHX A;  3UAQ A;  3SZD A;  5IYU A;  3AA0 A;  2XMX A;  2FGQ X;  4FZN A;  4Z3T A;  6PRN A;  2KXP A;  3VE1 A;  3T20 A;  4GCQ A;  2KC0 A;  2M06 A;  2POR A;  3SY7 A;  3KVD D;  1HXX A;  2M07 A;  3AA6 B;  4KR4 A;  4XNK A;  4B61 A;  3UPG A;  2X27 X;  4BUM X;  3AA7 B;  3VZT X;  1Q9F A;  5ADX L;  1MPF A;  3POQ A;  4O3Z A;  5GV0 A;  4O4X A;  1YS5 A;  2XE1 A;  4G76 A;  2KZ7 A;  4RLC A;  1QJ9 A;  1GFM A;  4LSF A;  2K4T A;  2YPV A;  3LK3 B;  4PUX A;  3VY8 X;  3VZU X;  4RJX A;  1ZHT A;  3LK4 2;  4FSO A;  4FRX A;  4QQ1 A;  2F1T A;  1ZHZ A;  5AFU L;  4FT6 A;  2JMM A;  3SY9 A;  1IZN B;  2N2L A;  4AYI D;  2YNK A;  3POU A;  2Y2X A;  2XE3 A;  3POR A;  1IZN A;  4GCS A;  3VY9 X;  3WI5 A;  3PQU A;  5AFU K;  3DA3 A;  3QRA A;  4D64 A;  4F4B A;  1THQ A;  4D5U A;  3LK2 B;  2MNH A;  4G75 A;  4FMS A;  4N58 A;  4GCP A;  2F1V A;  3AAA B;  4GF4 A;  5G26 A;  4D65 A;  1QJ8 A;  2J1N A;  3JTY A;  2O4V A;  3WI4 A;  2XG6 A;  3AA6 A;  1BH3 A;  4U9C A;  3T24 A;  2J4U P;  1GFO A;  3AA7 A;  8PRN A;  2QTK A;  3HWB A;  4FUV A;  1OPF A;  2GE4 A;  2XTR A;  4O3W A;  1HXU A;  4AYN A;  5D5D A;  3AAE B;  4LSI A;  1G90 A;  3LK3 A;  4AKM A;  2Y0K A;  4O3Y A;  4AYE C;  4AKR B;  3HOE A;  1OSM A;  3HW9 A;  3TZG A;  1GFN A;  2W81 C;  5FVN A;  4AZL A;  5DL7 A;  3SYS A;  1H6S 1;  1GFQ A;  2OMF A;  2ZFG A;  3AA1 B;  3O0E A;  1ORM A;  4KRA A;  3FYX A;  4RL9 A;  4C69 X;  2Y0L A;  3LK2 A;  1E54 A;  1GFP A;  3HOL A;  4N59 A;  3V8U A;  4AFK A;  3AAA A;  3PRN A;  3UU2 A;  2PRN A;  2XE2 A;  1ZHW A;  3G7G A;  1PRN A;  5DL5 A;  3C5O A;  4FRT A;  3AA0 B;  1PHO A;  4FES A;  7PRN A;  2KXP B;  4JCH A;  3EMN X;  4RLB A;  1HXT A;  1Q9G A;  2KDY A;  2Y7S A;  5JDP A;  2Y0H A;  3POX A;  2ODJ A;  4LSH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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