3VZUX

Crystal structure of outer membrane protein porb from neisseria meningitidis in complex with amp-pnp
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
341
structure length
341
Chain Sequence
b'QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords outer membrane protein
publication title Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Membrane protein
total genus 80
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vzuX00
5PRNA 4FRTA 2ZFGA 2Y0LA 3VY8X 1GFPA 1BT9A 4LSEA 1GFMA 3SZVA 5DL6A 1GFOA 5DL7A 2FGRA 2Y0HA 3POQA 1H6S1 4RJXA 4FT6A 4FRXA 4FSOA 3VZWX 4FMSA 3HWBA 3SZDA 1GFNA 2Y2XA 3VZUX 2PORA 3SYSA 4RJWA 2Y0KA 3UU2A 1PHOA 4D5UA 1MPFA 5JDPA 4KRAA 3HW9A 3SY7A 3A2SX 4LSIA 3T20A 5DL5A 3NSGA 4LSHA 3POXA 4D64A 2J1NA 1HXXA 2XE1A 3VZTX 3FYXA 3PRNA 2XG6A 2PRNA 2XE2A 1PRNA 3K19A 1E54A 4BUMX 1GFQA 3EMNX 4FOZA 2O4VA 3SY9A 3PORA 5FVNA 4JFBA 2ODJA 2XE5A 3UPGA 5DL8A 3JTYA 7PRNA 1BH3A 2XE3A 3POUA 1HXTA 2K4TA 3SYBA 4LSFA 4GCPA 3WI4A 2FGQX 3VY9X 1HXUA 3T0SA 1OSMA 4AUIA 4KR8A 8PRNA 2ZLDA 4GCQA 2QTKA 4KR4A 2J4UP 2OMFA 3WI5A 4C69X 4D65A 3T24A 6PRNA 4FSPA 1OPFA 4GCSA 3O0EA
chains in the Genus database with same CATH superfamily
5PRNA 1ORMA 3NJTA 3LK3A 4FRTA 4PR7A 2ZFGA 3LK41 4K3BA 5GTIO 1QJ8A 2KXPB 5B66O 2Y0LA 3VY8X 1GFPA 1BT9A 1IZNB 3PGUA 4LSEA 4E1TA 1GFMA 2R4NA 3A0HO 3SZVA 5B5EO 5G39A 5DL6A 1GFOA 5DL7A 4CTDA 4E1SA 2FGRA 2Y0HA 3POQA 4O3XB 1H6S1 3TZGA 1P4TA 2MNHA 3AA1A 4RJXA 4FT6A 4F4BA 4FRXA 1ZHYA 3O0EA 4FSOA 1Q9GA 3VZWX 4FZLA 3DA3A 2F1CX 4C4VA 4UB8O 4FMSA 4FQEA 3HWBA 3SZDA 1GFNA 2KZ7B 2Y2XA 3GP6A 3PGSA 4AYMC 5ADXK 2N2MA 3VZUX 4Z3TA 3AAAB 3PF1A 2PORA 3SYSA 5AFUK 5GV0A 4RJWA 2Y0KA 2IWVA 1PHOA 3BS0A 2WJRA 3LK2A 2M06A 4XNLA 5TISO 3UU2A 4D5UA 1MPFA 2X27X 3KVDD 2JMMA 3PGRA 5JDPA 4KRAA 5ADXL 3HW9A 3SY7A 3A2SX 2LHFA 4O3WA 3WU2O 2M07A 4K3CA 4LSIA 4RLBA 3G7GA 4N59A 1MM5A 4N58A 5KAIO 1Q9FA 4PUXA 4UB6O 2W80C 4AKMA 3BRYA 3AA6A 2X9KA 2LFUA 3JCUO 5DL5A 4N74A 3NSGA 4LSHA 3RBHA 3POXA 4AKRB 4D64A 2J1NA 1HXXA 2XE1A 3VZTX 3LK3B 3FYXA 4RL9A 5D5DA 3PRNA 2XG6A 1G90A 3AA0A 3AAEA 2GE4A 2PRNA 2AXTO 4AYNA 2XE2A 3PQSA 1PRNA 2ERVA 3K19A 2XTRA 3QRCA 3AA7A 2N2LA 3HOLA 1E54A 4AYDC 4RLCA 4BUMX 1GFQA 3EMNX 4FOZA 1MM4A 2R88A 4FZMA 4G75A 5G26A 1QJ9A 2MHLA 2O4VA 1YS5A 3AA1B 1QJPA 3DZMA 3SY9A 4XNKA 1ZHTA 2F1VA 3AAEB 3PORA 5FVNA 3DWNA 4AYID 2R4LA 4JFBA 5T5FA 2IWWA 4C4VB 2ODJA 2XE5A 2YPVA 1ZHZA 3VE1A 5H2FO 3UPGA 3LK42 1T16A 2R4OA 2WVPA 5G3AA 3A0BO 1BXWA 3C5OA 3LK2B 3VE2A 5DL8A 4GHBA 2KXPA 5EE2A 4AYEC 3JTYA 3QRAA 7PRNA 1S5LO 1IZNA 1BH3A 1THQA 4FZNA 1ZHWA 2XE3A 3POUA 4GF4A 1HXTA 2K4TA 4C00A 3SYBA 3BRZA 2XMXA 4LSFA 4B61A 3AA6B 4G76A 4GCPA 2W81C 3HOEA 2FGQX 4FESA 4FUVA 4QQ1A 3VY9X 3WI4A 2KDYA 1ZHXA 4IL6O 1HXUA 3T0SA 4O49A 4AFKA 2R4PA 2K0LA 2XTQA 4N75A 1OSMA 3AA0B 3PQUA 4O3ZA 4AUIA 2KZ7A 3DA4A 4KR8A 8PRNA 2ZLDA 4O4UA 3AAAA 4O3YA 3AA7B 3V8UA 4GCQA 2QTKA 4KR4A 4PJ0O 3UAQA 2OMFA 2J4UP 4O4XA 5G38A 3WI5A 2JQYA 2R8AA 2KC0A 4U9CA 4JCHA 5E79O 4C69X 4D65A 5AFUL 1T1LA 3DWOX 4AZLA 5KAFO 3KZIO 3T24A 5IYUA 2WJQA 6PRNA 3T20A 4AKRA 2Y7SA 5GTHO 4FSPA 1OPFA 2F1TA 2R89A 4GCSA 2YNKA
chains in the Genus database with same CATH topology
5PRNA 1ORMA 3LK3A 4FRTA 2ZFGA 3LK41 1QJ8A 2KXPB 2Y0LA 3VY8X 1GFPA 1BT9A 1IZNB 4LSEA 4E1TA 1GFMA 3SZVA 5DL6A 1GFOA 5DL7A 4E1SA 2FGRA 2Y0HA 3POQA 4O3XB 1H6S1 3TZGA 1P4TA 2MNHA 3AA1A 4RJXA 4FT6A 4F4BA 4FRXA 1ZHYA 3O0EA 4FSOA 1Q9GA 3VZWX 4FZLA 3DA3A 4FMSA 5ADXK 3HWBA 3SZDA 1GFNA 2KZ7B 2Y2XA 3GP6A 4AYMC 2N2MA 2F1TA 3VZUX 4Z3TA 3AAAB 2PORA 3SYSA 5AFUK 5GV0A 4RJWA 2Y0KA 3UU2A 1PHOA 3LK2A 4XNLA 4D5UA 2M06A 1MPFA 2X27X 3KVDD 2JMMA 5JDPA 4KRAA 3HW9A 3SY7A 3A2SX 2LHFA 4O3WA 2M07A 4LSIA 4RLBA 5ADXL 3G7GA 4N59A 1MM5A 4N58A 4AKMA 1Q9FA 4PUXA 3T20A 2W80C 3AA6A 2LFUA 5DL5A 4AKRB 3NSGA 4LSHA 3RBHA 3POXA 4D64A 5AFUL 2J1NA 1HXXA 2XE1A 3VZTX 3LK3B 3FYXA 4RL9A 5D5DA 3PRNA 2XG6A 1G90A 3AA0A 3AAEA 2GE4A 2PRNA 4AYNA 2XE2A 3PQSA 1PRNA 2ERVA 3K19A 2XTRA 3QRCA 3AA7A 2N2LA 3HOLA 1E54A 4AYDC 4RLCA 4BUMX 1GFQA 3EMNX 4FOZA 1MM4A 4FZMA 5G26A 4G75A 1QJ9A 2MHLA 2O4VA 1YS5A 3AA1B 1QJPA 3SY9A 4XNKA 1ZHTA 2F1VA 3AAEB 3PORA 5FVNA 4AYID 4JFBA 5T5FA 2ODJA 2XE5A 2YPVA 1ZHZA 3VE1A 3UPGA 3LK42 1BXWA 3C5OA 3LK2B 3VE2A 5DL8A 4GHBA 2KXPA 5EE2A 4AYEC 3JTYA 3QRAA 7PRNA 1IZNA 1BH3A 1THQA 4FZNA 1ZHWA 2XE3A 3POUA 4GF4A 1HXTA 2K4TA 3SYBA 4LSFA 2XMXA 4B61A 3AA6B 4G76A 4GCPA 3HOEA 2FGQX 4FESA 4FUVA 4QQ1A 3VY9X 3WI4A 2KDYA 1ZHXA 1HXUA 3T0SA 4O49A 4AFKA 2K0LA 2XTQA 1OSMA 3AA0B 3PQUA 4O3ZA 4AUIA 2KZ7A 3DA4A 4KR8A 8PRNA 2ZLDA 4O4UA 3AAAA 4O3YA 3AA7B 3V8UA 4GCQA 2QTKA 4KR4A 3UAQA 2OMFA 2J4UP 4O4XA 3WI5A 4U9CA 2KC0A 4JCHA 4C69X 4D65A 4AZLA 3T24A 5IYUA 6PRNA 4AKRA 2Y7SA 4FSPA 1OPFA 2W81C 4GCSA 2YNKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5PRN A;  4FRT A;  2ZFG A;  2Y0L A;  3VY8 X;  1GFP A;  1BT9 A;  4LSE A;  1GFM A;  3SZV A;  5DL6 A;  1GFO A;  5DL7 A;  2FGR A;  2Y0H A;  3POQ A;  1H6S 1;  4RJX A;  4FT6 A;  4FRX A;  4FSO A;  3VZW X;  4FMS A;  3HWB A;  3SZD A;  1GFN A;  2Y2X A;  3VZU X;  2POR A;  3SYS A;  4RJW A;  2Y0K A;  3UU2 A;  1PHO A;  4D5U A;  1MPF A;  5JDP A;  4KRA A;  3HW9 A;  3SY7 A;  3A2S X;  4LSI A;  3T20 A;  5DL5 A;  3NSG A;  4LSH A;  3POX A;  4D64 A;  2J1N A;  1HXX A;  2XE1 A;  3VZT X;  3FYX A;  3PRN A;  2XG6 A;  2PRN A;  2XE2 A;  1PRN A;  3K19 A;  1E54 A;  4BUM X;  1GFQ A;  3EMN X;  4FOZ A;  2O4V A;  3SY9 A;  3POR A;  5FVN A;  4JFB A;  2ODJ A;  2XE5 A;  3UPG A;  5DL8 A;  3JTY A;  7PRN A;  1BH3 A;  2XE3 A;  3POU A;  1HXT A;  2K4T A;  3SYB A;  4LSF A;  4GCP A;  3WI4 A;  2FGQ X;  3VY9 X;  1HXU A;  3T0S A;  1OSM A;  4AUI A;  4KR8 A;  8PRN A;  2ZLD A;  4GCQ A;  2QTK A;  4KR4 A;  2J4U P;  2OMF A;  3WI5 A;  4C69 X;  4D65 A;  3T24 A;  6PRN A;  4FSP A;  1OPF A;  4GCS A;  3O0E A; 
#chains in the Genus database with same CATH topology
 5PRN A;  1ORM A;  3NJT A;  3LK3 A;  4FRT A;  4PR7 A;  2ZFG A;  3LK4 1;  4K3B A;  5GTI O;  1QJ8 A;  2KXP B;  5B66 O;  2Y0L A;  3VY8 X;  1GFP A;  1BT9 A;  1IZN B;  3PGU A;  4LSE A;  4E1T A;  1GFM A;  2R4N A;  3A0H O;  3SZV A;  5B5E O;  5G39 A;  5DL6 A;  1GFO A;  5DL7 A;  4CTD A;  4E1S A;  2FGR A;  2Y0H A;  3POQ A;  4O3X B;  1H6S 1;  3TZG A;  1P4T A;  2MNH A;  3AA1 A;  4RJX A;  4FT6 A;  4F4B A;  4FRX A;  1ZHY A;  3O0E A;  4FSO A;  1Q9G A;  3VZW X;  4FZL A;  3DA3 A;  2F1C X;  4C4V A;  4UB8 O;  4FMS A;  4FQE A;  3HWB A;  3SZD A;  1GFN A;  2KZ7 B;  2Y2X A;  3GP6 A;  3PGS A;  4AYM C;  5ADX K;  2N2M A;  3VZU X;  4Z3T A;  3AAA B;  3PF1 A;  2POR A;  3SYS A;  5AFU K;  5GV0 A;  4RJW A;  2Y0K A;  2IWV A;  1PHO A;  3BS0 A;  2WJR A;  3LK2 A;  2M06 A;  4XNL A;  5TIS O;  3UU2 A;  4D5U A;  1MPF A;  2X27 X;  3KVD D;  2JMM A;  3PGR A;  5JDP A;  4KRA A;  5ADX L;  3HW9 A;  3SY7 A;  3A2S X;  2LHF A;  4O3W A;  3WU2 O;  2M07 A;  4K3C A;  4LSI A;  4RLB A;  3G7G A;  4N59 A;  1MM5 A;  4N58 A;  5KAI O;  1Q9F A;  4PUX A;  4UB6 O;  2W80 C;  4AKM A;  3BRY A;  3AA6 A;  2X9K A;  2LFU A;  3JCU O;  5DL5 A;  4N74 A;  3NSG A;  4LSH A;  3RBH A;  3POX A;  4AKR B;  4D64 A;  2J1N A;  1HXX A;  2XE1 A;  3VZT X;  3LK3 B;  3FYX A;  4RL9 A;  5D5D A;  3PRN A;  2XG6 A;  1G90 A;  3AA0 A;  3AAE A;  2GE4 A;  2PRN A;  2AXT O;  4AYN A;  2XE2 A;  3PQS A;  1PRN A;  2ERV A;  3K19 A;  2XTR A;  3QRC A;  3AA7 A;  2N2L A;  3HOL A;  1E54 A;  4AYD C;  4RLC A;  4BUM X;  1GFQ A;  3EMN X;  4FOZ A;  1MM4 A;  2R88 A;  4FZM A;  4G75 A;  5G26 A;  1QJ9 A;  2MHL A;  2O4V A;  1YS5 A;  3AA1 B;  1QJP A;  3DZM A;  3SY9 A;  4XNK A;  1ZHT A;  2F1V A;  3AAE B;  3POR A;  5FVN A;  3DWN A;  4AYI D;  2R4L A;  4JFB A;  5T5F A;  2IWW A;  4C4V B;  2ODJ A;  2XE5 A;  2YPV A;  1ZHZ A;  3VE1 A;  5H2F O;  3UPG A;  3LK4 2;  1T16 A;  2R4O A;  2WVP A;  5G3A A;  3A0B O;  1BXW A;  3C5O A;  3LK2 B;  3VE2 A;  5DL8 A;  4GHB A;  2KXP A;  5EE2 A;  4AYE C;  3JTY A;  3QRA A;  7PRN A;  1S5L O;  1IZN A;  1BH3 A;  1THQ A;  4FZN A;  1ZHW A;  2XE3 A;  3POU A;  4GF4 A;  1HXT A;  2K4T A;  4C00 A;  3SYB A;  3BRZ A;  2XMX A;  4LSF A;  4B61 A;  3AA6 B;  4G76 A;  4GCP A;  2W81 C;  3HOE A;  2FGQ X;  4FES A;  4FUV A;  4QQ1 A;  3VY9 X;  3WI4 A;  2KDY A;  1ZHX A;  4IL6 O;  1HXU A;  3T0S A;  4O49 A;  4AFK A;  2R4P A;  2K0L A;  2XTQ A;  4N75 A;  1OSM A;  3AA0 B;  3PQU A;  4O3Z A;  4AUI A;  2KZ7 A;  3DA4 A;  4KR8 A;  8PRN A;  2ZLD A;  4O4U A;  3AAA A;  4O3Y A;  3AA7 B;  3V8U A;  4GCQ A;  2QTK A;  4KR4 A;  4PJ0 O;  3UAQ A;  2OMF A;  2J4U P;  4O4X A;  5G38 A;  3WI5 A;  2JQY A;  2R8A A;  2KC0 A;  4U9C A;  4JCH A;  5E79 O;  4C69 X;  4D65 A;  5AFU L;  1T1L A;  3DWO X;  4AZL A;  5KAF O;  3KZI O;  3T24 A;  5IYU A;  2WJQ A;  6PRN A;  3T20 A;  4AKR A;  2Y7S A;  5GTH O;  4FSP A;  1OPF A;  2F1T A;  2R89 A;  4GCS A;  2YNK A; 
#chains in the Genus database with same CATH homology
 5PRN A;  1ORM A;  3LK3 A;  4FRT A;  2ZFG A;  3LK4 1;  1QJ8 A;  2KXP B;  2Y0L A;  3VY8 X;  1GFP A;  1BT9 A;  1IZN B;  4LSE A;  4E1T A;  1GFM A;  3SZV A;  5DL6 A;  1GFO A;  5DL7 A;  4E1S A;  2FGR A;  2Y0H A;  3POQ A;  4O3X B;  1H6S 1;  3TZG A;  1P4T A;  2MNH A;  3AA1 A;  4RJX A;  4FT6 A;  4F4B A;  4FRX A;  1ZHY A;  3O0E A;  4FSO A;  1Q9G A;  3VZW X;  4FZL A;  3DA3 A;  4FMS A;  5ADX K;  3HWB A;  3SZD A;  1GFN A;  2KZ7 B;  2Y2X A;  3GP6 A;  4AYM C;  2N2M A;  2F1T A;  3VZU X;  4Z3T A;  3AAA B;  2POR A;  3SYS A;  5AFU K;  5GV0 A;  4RJW A;  2Y0K A;  3UU2 A;  1PHO A;  3LK2 A;  4XNL A;  4D5U A;  2M06 A;  1MPF A;  2X27 X;  3KVD D;  2JMM A;  5JDP A;  4KRA A;  3HW9 A;  3SY7 A;  3A2S X;  2LHF A;  4O3W A;  2M07 A;  4LSI A;  4RLB A;  5ADX L;  3G7G A;  4N59 A;  1MM5 A;  4N58 A;  4AKM A;  1Q9F A;  4PUX A;  3T20 A;  2W80 C;  3AA6 A;  2LFU A;  5DL5 A;  4AKR B;  3NSG A;  4LSH A;  3RBH A;  3POX A;  4D64 A;  5AFU L;  2J1N A;  1HXX A;  2XE1 A;  3VZT X;  3LK3 B;  3FYX A;  4RL9 A;  5D5D A;  3PRN A;  2XG6 A;  1G90 A;  3AA0 A;  3AAE A;  2GE4 A;  2PRN A;  4AYN A;  2XE2 A;  3PQS A;  1PRN A;  2ERV A;  3K19 A;  2XTR A;  3QRC A;  3AA7 A;  2N2L A;  3HOL A;  1E54 A;  4AYD C;  4RLC A;  4BUM X;  1GFQ A;  3EMN X;  4FOZ A;  1MM4 A;  4FZM A;  5G26 A;  4G75 A;  1QJ9 A;  2MHL A;  2O4V A;  1YS5 A;  3AA1 B;  1QJP A;  3SY9 A;  4XNK A;  1ZHT A;  2F1V A;  3AAE B;  3POR A;  5FVN A;  4AYI D;  4JFB A;  5T5F A;  2ODJ A;  2XE5 A;  2YPV A;  1ZHZ A;  3VE1 A;  3UPG A;  3LK4 2;  1BXW A;  3C5O A;  3LK2 B;  3VE2 A;  5DL8 A;  4GHB A;  2KXP A;  5EE2 A;  4AYE C;  3JTY A;  3QRA A;  7PRN A;  1IZN A;  1BH3 A;  1THQ A;  4FZN A;  1ZHW A;  2XE3 A;  3POU A;  4GF4 A;  1HXT A;  2K4T A;  3SYB A;  4LSF A;  2XMX A;  4B61 A;  3AA6 B;  4G76 A;  4GCP A;  3HOE A;  2FGQ X;  4FES A;  4FUV A;  4QQ1 A;  3VY9 X;  3WI4 A;  2KDY A;  1ZHX A;  1HXU A;  3T0S A;  4O49 A;  4AFK A;  2K0L A;  2XTQ A;  1OSM A;  3AA0 B;  3PQU A;  4O3Z A;  4AUI A;  2KZ7 A;  3DA4 A;  4KR8 A;  8PRN A;  2ZLD A;  4O4U A;  3AAA A;  4O3Y A;  3AA7 B;  3V8U A;  4GCQ A;  2QTK A;  4KR4 A;  3UAQ A;  2OMF A;  2J4U P;  4O4X A;  3WI5 A;  4U9C A;  2KC0 A;  4JCH A;  4C69 X;  4D65 A;  4AZL A;  3T24 A;  5IYU A;  6PRN A;  4AKR A;  2Y7S A;  4FSP A;  1OPF A;  2W81 C;  4GCS A;  2YNK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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