3VZUX

Crystal structure of outer membrane protein porb from neisseria meningitidis in complex with amp-pnp
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Neisseria meningitidis
publication title Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
pubmed doi rcsb
molecule keywords outer membrane protein
total genus 80
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vzuX00
1OPFA 4FRXA 3VY8X 4FSOA 1BH3A 4LSEA 2O4VA 5FVNA 3SYBA 3POUA 3EMNX 3HW9A 3UU2A 2J1NA 2Y0LA 1E54A 4AUIA 3NSGA 4LSIA 1GFMA 2FGQX 3FYXA 5PRNA 3POXA 3HWBA 3POQA 1HXTA 3SY7A 2XG6A 1OSMA 8PRNA 3PRNA 4D64A 2FGRA 3SZVA 3JTYA 5DL7A 1BT9A 3VZWX 2XE2A 3A2SX 2K4TA 4LSHA 3K19A 3O0EA 4GCPA 4KR4A 3SYSA 1GFNA 3SY9A 3VZTX 2ODJA 3T0SA 1GFOA 2XE1A 4RJXA 1PRNA 2ZFGA 4LSFA 2XE5A 4JFBA 7PRNA 4D65A 3SZDA 3T24A 3WI4A 3T20A 4FRTA 5DL8A 4D5UA 1H6S1 2PORA 2OMFA 2J4UP 3PORA 3VY9X 2ZLDA 4KR8A 3VZUX 3WI5A 3UPGA 5DL5A 2QTKA 4FT6A 1GFQA 4C69X 2PRNA 4GCQA 4RJWA 5JDPA 2Y0KA 1HXUA 2Y0HA 4FSPA 6PRNA 5DL6A 1PHOA 2Y2XA 2XE3A 4BUMX 1MPFA 1HXXA 4FMSA 1GFPA 4GCSA 4KRAA 4FOZA
chains in the Genus database with same CATH superfamily
1OPFA 4FRXA 4GHBA 3AAAB 4XNKA 3VY8X 2F1VA 4FSOA 1BH3A 3AA0A 1IZNA 3A0BO 1THQA 2GE4A 2O4VA 2KC0A 2R4LA 4LSEA 1YS5A 5FVNA 4UB6O 5G38A 1Q9FA 2IWVA 3LK41 4CTDA 3HOEA 3POUA 3EMNX 4QQ1A 5AFUK 3HW9A 2WVPA 5GV0A 3AA7B 3UU2A 5IYUA 3AAEA 5ADXK 4AKMA 2J1NA 2K0LA 2Y0LA 2M07A 3AA7A 3HOLA 1E54A 3LK3B 3QRCA 3NSGA 5D5DA 5GTIO 3DA4A 4AUIA 4AYEC 4LSIA 5EE2A 1GFMA 2FGQX 3FYXA 3AA6A 4N74A 4U9CA 5PRNA 3DA3A 3POXA 3HWBA 4AKRB 1QJ8A 2LFUA 2R4NA 3POQA 2AXTO 4PR7A 1HXTA 2N2LA 3WU2O 3AA1A 2YNKA 4AKRA 4FZMA 3SY7A 2XTQA 3A0HO 2XG6A 2KXPB 2R8AA 3LK2A 4FUVA 1OSMA 2KXPA 3PGSA 4O49A 8PRNA 4GF4A 2R88A 3PRNA 2F1TA 4D64A 1ZHTA 4K3CA 2FGRA 4RLCA 1ZHYA 1ZHXA 3AAAA 3SZVA 3PQUA 2MHLA 3JTYA 1BT9A 5DL7A 3VZWX 2XE2A 3A2SX 2K4TA 3DWNA 4LSHA 4N75A 2R4OA 4K3BA 3KZIO 3K19A 3O0EA 3BRYA 3PQSA 4GCPA 4KR4A 4N58A 4C4VB 2W80C 2X9KA 4FZNA 4UB8O 3SYSA 1GFNA 2M06A 2R4PA 3SY9A 3VZTX 3LK3A 5H2FO 4O4XA 4XNLA 2ODJA 3T0SA 3V8UA 1GFOA 2KZ7B 2XE1A 4O4UA 4RJXA 3VE1A 1ZHWA 2W81C 4AZLA 1PRNA 2KZ7A 2N2MA 3NJTA 2ZFGA 4LSFA 2XE5A 3PGUA 4JFBA 1BXWA 1T1LA 2KDYA 3C5OA 7PRNA 5B5EO 4D65A 3SZDA 4FZLA 3G7GA 3T24A 1ZHZA 3WI4A 4AYID 4B61A 1QJPA 1T16A 5G26A 4E1TA 3T20A 2X27X 4FRTA 4AYDC 2WJQA 5DL8A 4D5UA 1H6S1 4E1SA 1MM5A 5AFUL 1G90A 2LHFA 2PORA 2OMFA 3SYBA 2XTRA 2MNHA 3LK42 4G76A 5B66O 2J4UP 4C00A 1Q9GA 3BRZA 3PORA 3VY9X 2ZLDA 2XMXA 4KR8A 3VZUX 2WJRA 3JCUO 5T5FA 3QRAA 3WI5A 4C4VA 4PUXA 3UAQA 4AYNA 5DL5A 3UPGA 3GP6A 4N59A 4G75A 5KAFO 2QTKA 4AYMC 4F4BA 4FT6A 1GFQA 2Y7SA 5GTHO 1IZNB 4C69X 5G39A 3DZMA 2PRNA 2ERVA 4GCQA 3RBHA 4RJWA 4FQEA 4O3YA 1QJ9A 2F1CX 4PJ0O 4JCHA 5JDPA 2Y0KA 3AAEB 3KVDD 1HXUA 1MM4A 2Y0HA 3DWOX 4FESA 4RL9A 1P4TA 4FSPA 5TISO 2JMMA 6PRNA 5DL6A 1ORMA 2R89A 1PHOA 2Y2XA 2XE3A 3AA6B 3TZGA 4BUMX 5ADXL 1MPFA 5KAIO 4O3WA 1HXXA 4AFKA 2JQYA 4O3ZA 4O3XB 3AA1B 3BS0A 3PGRA 2IWWA 4RLBA 2YPVA 3VE2A 3PF1A 4FMSA 5E79O 5G3AA 1GFPA 3LK2B 4Z3TA 4GCSA 4KRAA 4FOZA 1S5LO 3AA0B 4IL6O
chains in the Genus database with same CATH topology
1OPFA 4FRXA 4GHBA 3AAAB 4XNKA 3VY8X 2F1VA 4FSOA 1BH3A 3AA0A 1IZNA 4LSEA 1THQA 2GE4A 2O4VA 2KC0A 5FVNA 3SYBA 1YS5A 1Q9FA 3LK41 3HOEA 3POUA 3EMNX 4QQ1A 5AFUK 3HW9A 5GV0A 3AA7B 3UU2A 5IYUA 3AAEA 5ADXK 4AKMA 2J1NA 2K0LA 2Y0LA 2M07A 3AA7A 3HOLA 1E54A 3LK3B 3QRCA 3NSGA 5D5DA 4AUIA 3DA4A 4AYEC 1G90A 4LSIA 5EE2A 1GFMA 2FGQX 3FYXA 3AA6A 4U9CA 5PRNA 3DA3A 3POXA 3HWBA 4AKRB 1QJ8A 2LFUA 3POQA 1HXTA 2N2LA 3AA1A 2YNKA 4AKRA 4FZMA 3SY7A 2XTQA 2XG6A 2KXPB 3LK2A 4FUVA 1OSMA 2KXPA 4O49A 8PRNA 4GF4A 3PRNA 4D64A 2F1TA 1ZHTA 2FGRA 4RLCA 1ZHYA 1ZHXA 3AAAA 3SZVA 3PQUA 2MHLA 3JTYA 1BT9A 5DL7A 3VZWX 2XE2A 3A2SX 2K4TA 4LSHA 3K19A 3O0EA 3PQSA 4GCPA 4KR4A 4N58A 2W80C 3SYSA 4FZNA 1GFNA 2M06A 3SY9A 3VZTX 3LK3A 4O4XA 4XNLA 2ODJA 3T0SA 3V8UA 1GFOA 2KZ7B 2XE1A 4O4UA 4RJXA 3VE1A 1ZHWA 2W81C 4AZLA 1PRNA 2KZ7A 2N2MA 2ZFGA 4LSFA 2XE5A 4JFBA 1BXWA 2KDYA 3C5OA 7PRNA 4D65A 3SZDA 4FZLA 3G7GA 3T24A 1ZHZA 3WI4A 4AYID 4B61A 1QJPA 5G26A 4E1TA 3T20A 2X27X 4FRTA 4AYDC 4E1SA 5DL8A 4D5UA 1H6S1 5AFUL 1MM5A 2LHFA 2PORA 2OMFA 2XTRA 2MNHA 3LK42 4G76A 2J4UP 1Q9GA 3PORA 3VY9X 2ZLDA 2XMXA 4KR8A 3VZUX 5T5FA 3QRAA 3WI5A 4PUXA 3UAQA 4AYNA 5DL5A 3UPGA 3GP6A 4N59A 4G75A 2QTKA 4AYMC 4F4BA 4FT6A 1GFQA 2Y7SA 1IZNB 4C69X 2PRNA 2ERVA 4GCQA 3RBHA 4RJWA 4O3YA 1QJ9A 4JCHA 5JDPA 2Y0KA 3AAEB 3KVDD 1HXUA 1MM4A 2Y0HA 4FESA 4RL9A 1P4TA 4FSPA 6PRNA 2JMMA 5DL6A 1ORMA 1PHOA 2Y2XA 2XE3A 3AA6B 3TZGA 4BUMX 5ADXL 1MPFA 4O3WA 1HXXA 4AFKA 4O3ZA 4O3XB 3AA1B 4RLBA 2YPVA 3VE2A 4FMSA 1GFPA 3LK2B 4Z3TA 4GCSA 4KRAA 4FOZA 3AA0B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OPF A;  4FRX A;  3VY8 X;  4FSO A;  1BH3 A;  4LSE A;  2O4V A;  5FVN A;  3SYB A;  3POU A;  3EMN X;  3HW9 A;  3UU2 A;  2J1N A;  2Y0L A;  1E54 A;  4AUI A;  3NSG A;  4LSI A;  1GFM A;  2FGQ X;  3FYX A;  5PRN A;  3POX A;  3HWB A;  3POQ A;  1HXT A;  3SY7 A;  2XG6 A;  1OSM A;  8PRN A;  3PRN A;  4D64 A;  2FGR A;  3SZV A;  3JTY A;  5DL7 A;  1BT9 A;  3VZW X;  2XE2 A;  3A2S X;  2K4T A;  4LSH A;  3K19 A;  3O0E A;  4GCP A;  4KR4 A;  3SYS A;  1GFN A;  3SY9 A;  3VZT X;  2ODJ A;  3T0S A;  1GFO A;  2XE1 A;  4RJX A;  1PRN A;  2ZFG A;  4LSF A;  2XE5 A;  4JFB A;  7PRN A;  4D65 A;  3SZD A;  3T24 A;  3WI4 A;  3T20 A;  4FRT A;  5DL8 A;  4D5U A;  1H6S 1;  2POR A;  2OMF A;  2J4U P;  3POR A;  3VY9 X;  2ZLD A;  4KR8 A;  3VZU X;  3WI5 A;  3UPG A;  5DL5 A;  2QTK A;  4FT6 A;  1GFQ A;  4C69 X;  2PRN A;  4GCQ A;  4RJW A;  5JDP A;  2Y0K A;  1HXU A;  2Y0H A;  4FSP A;  6PRN A;  5DL6 A;  1PHO A;  2Y2X A;  2XE3 A;  4BUM X;  1MPF A;  1HXX A;  4FMS A;  1GFP A;  4GCS A;  4KRA A;  4FOZ A; 
#chains in the Genus database with same CATH topology
 1OPF A;  4FRX A;  4GHB A;  3AAA B;  4XNK A;  3VY8 X;  2F1V A;  4FSO A;  1BH3 A;  3AA0 A;  1IZN A;  3A0B O;  1THQ A;  2GE4 A;  2O4V A;  2KC0 A;  2R4L A;  4LSE A;  1YS5 A;  5FVN A;  4UB6 O;  5G38 A;  1Q9F A;  2IWV A;  3LK4 1;  4CTD A;  3HOE A;  3POU A;  3EMN X;  4QQ1 A;  5AFU K;  3HW9 A;  2WVP A;  5GV0 A;  3AA7 B;  3UU2 A;  5IYU A;  3AAE A;  5ADX K;  4AKM A;  2J1N A;  2K0L A;  2Y0L A;  2M07 A;  3AA7 A;  3HOL A;  1E54 A;  3LK3 B;  3QRC A;  3NSG A;  5D5D A;  5GTI O;  3DA4 A;  4AUI A;  4AYE C;  4LSI A;  5EE2 A;  1GFM A;  2FGQ X;  3FYX A;  3AA6 A;  4N74 A;  4U9C A;  5PRN A;  3DA3 A;  3POX A;  3HWB A;  4AKR B;  1QJ8 A;  2LFU A;  2R4N A;  3POQ A;  2AXT O;  4PR7 A;  1HXT A;  2N2L A;  3WU2 O;  3AA1 A;  2YNK A;  4AKR A;  4FZM A;  3SY7 A;  2XTQ A;  3A0H O;  2XG6 A;  2KXP B;  2R8A A;  3LK2 A;  4FUV A;  1OSM A;  2KXP A;  3PGS A;  4O49 A;  8PRN A;  4GF4 A;  2R88 A;  3PRN A;  2F1T A;  4D64 A;  1ZHT A;  4K3C A;  2FGR A;  4RLC A;  1ZHY A;  1ZHX A;  3AAA A;  3SZV A;  3PQU A;  2MHL A;  3JTY A;  1BT9 A;  5DL7 A;  3VZW X;  2XE2 A;  3A2S X;  2K4T A;  3DWN A;  4LSH A;  4N75 A;  2R4O A;  4K3B A;  3KZI O;  3K19 A;  3O0E A;  3BRY A;  3PQS A;  4GCP A;  4KR4 A;  4N58 A;  4C4V B;  2W80 C;  2X9K A;  4FZN A;  4UB8 O;  3SYS A;  1GFN A;  2M06 A;  2R4P A;  3SY9 A;  3VZT X;  3LK3 A;  5H2F O;  4O4X A;  4XNL A;  2ODJ A;  3T0S A;  3V8U A;  1GFO A;  2KZ7 B;  2XE1 A;  4O4U A;  4RJX A;  3VE1 A;  1ZHW A;  2W81 C;  4AZL A;  1PRN A;  2KZ7 A;  2N2M A;  3NJT A;  2ZFG A;  4LSF A;  2XE5 A;  3PGU A;  4JFB A;  1BXW A;  1T1L A;  2KDY A;  3C5O A;  7PRN A;  5B5E O;  4D65 A;  3SZD A;  4FZL A;  3G7G A;  3T24 A;  1ZHZ A;  3WI4 A;  4AYI D;  4B61 A;  1QJP A;  1T16 A;  5G26 A;  4E1T A;  3T20 A;  2X27 X;  4FRT A;  4AYD C;  2WJQ A;  5DL8 A;  4D5U A;  1H6S 1;  4E1S A;  1MM5 A;  5AFU L;  1G90 A;  2LHF A;  2POR A;  2OMF A;  3SYB A;  2XTR A;  2MNH A;  3LK4 2;  4G76 A;  5B66 O;  2J4U P;  4C00 A;  1Q9G A;  3BRZ A;  3POR A;  3VY9 X;  2ZLD A;  2XMX A;  4KR8 A;  3VZU X;  2WJR A;  3JCU O;  5T5F A;  3QRA A;  3WI5 A;  4C4V A;  4PUX A;  3UAQ A;  4AYN A;  5DL5 A;  3UPG A;  3GP6 A;  4N59 A;  4G75 A;  5KAF O;  2QTK A;  4AYM C;  4F4B A;  4FT6 A;  1GFQ A;  2Y7S A;  5GTH O;  1IZN B;  4C69 X;  5G39 A;  3DZM A;  2PRN A;  2ERV A;  4GCQ A;  3RBH A;  4RJW A;  4FQE A;  4O3Y A;  1QJ9 A;  2F1C X;  4PJ0 O;  4JCH A;  5JDP A;  2Y0K A;  3AAE B;  3KVD D;  1HXU A;  1MM4 A;  2Y0H A;  3DWO X;  4FES A;  4RL9 A;  1P4T A;  4FSP A;  5TIS O;  2JMM A;  6PRN A;  5DL6 A;  1ORM A;  2R89 A;  1PHO A;  2Y2X A;  2XE3 A;  3AA6 B;  3TZG A;  4BUM X;  5ADX L;  1MPF A;  5KAI O;  4O3W A;  1HXX A;  4AFK A;  2JQY A;  4O3Z A;  4O3X B;  3AA1 B;  3BS0 A;  3PGR A;  2IWW A;  4RLB A;  2YPV A;  3VE2 A;  3PF1 A;  4FMS A;  5E79 O;  5G3A A;  1GFP A;  3LK2 B;  4Z3T A;  4GCS A;  4KRA A;  4FOZ A;  1S5L O;  3AA0 B;  4IL6 O; 
#chains in the Genus database with same CATH homology
 1OPF A;  4FRX A;  4GHB A;  3AAA B;  4XNK A;  3VY8 X;  2F1V A;  4FSO A;  1BH3 A;  3AA0 A;  1IZN A;  4LSE A;  1THQ A;  2GE4 A;  2O4V A;  2KC0 A;  5FVN A;  3SYB A;  1YS5 A;  1Q9F A;  3LK4 1;  3HOE A;  3POU A;  3EMN X;  4QQ1 A;  5AFU K;  3HW9 A;  5GV0 A;  3AA7 B;  3UU2 A;  5IYU A;  3AAE A;  5ADX K;  4AKM A;  2J1N A;  2K0L A;  2Y0L A;  2M07 A;  3AA7 A;  3HOL A;  1E54 A;  3LK3 B;  3QRC A;  3NSG A;  5D5D A;  4AUI A;  3DA4 A;  4AYE C;  1G90 A;  4LSI A;  5EE2 A;  1GFM A;  2FGQ X;  3FYX A;  3AA6 A;  4U9C A;  5PRN A;  3DA3 A;  3POX A;  3HWB A;  4AKR B;  1QJ8 A;  2LFU A;  3POQ A;  1HXT A;  2N2L A;  3AA1 A;  2YNK A;  4AKR A;  4FZM A;  3SY7 A;  2XTQ A;  2XG6 A;  2KXP B;  3LK2 A;  4FUV A;  1OSM A;  2KXP A;  4O49 A;  8PRN A;  4GF4 A;  3PRN A;  4D64 A;  2F1T A;  1ZHT A;  2FGR A;  4RLC A;  1ZHY A;  1ZHX A;  3AAA A;  3SZV A;  3PQU A;  2MHL A;  3JTY A;  1BT9 A;  5DL7 A;  3VZW X;  2XE2 A;  3A2S X;  2K4T A;  4LSH A;  3K19 A;  3O0E A;  3PQS A;  4GCP A;  4KR4 A;  4N58 A;  2W80 C;  3SYS A;  4FZN A;  1GFN A;  2M06 A;  3SY9 A;  3VZT X;  3LK3 A;  4O4X A;  4XNL A;  2ODJ A;  3T0S A;  3V8U A;  1GFO A;  2KZ7 B;  2XE1 A;  4O4U A;  4RJX A;  3VE1 A;  1ZHW A;  2W81 C;  4AZL A;  1PRN A;  2KZ7 A;  2N2M A;  2ZFG A;  4LSF A;  2XE5 A;  4JFB A;  1BXW A;  2KDY A;  3C5O A;  7PRN A;  4D65 A;  3SZD A;  4FZL A;  3G7G A;  3T24 A;  1ZHZ A;  3WI4 A;  4AYI D;  4B61 A;  1QJP A;  5G26 A;  4E1T A;  3T20 A;  2X27 X;  4FRT A;  4AYD C;  4E1S A;  5DL8 A;  4D5U A;  1H6S 1;  5AFU L;  1MM5 A;  2LHF A;  2POR A;  2OMF A;  2XTR A;  2MNH A;  3LK4 2;  4G76 A;  2J4U P;  1Q9G A;  3POR A;  3VY9 X;  2ZLD A;  2XMX A;  4KR8 A;  3VZU X;  5T5F A;  3QRA A;  3WI5 A;  4PUX A;  3UAQ A;  4AYN A;  5DL5 A;  3UPG A;  3GP6 A;  4N59 A;  4G75 A;  2QTK A;  4AYM C;  4F4B A;  4FT6 A;  1GFQ A;  2Y7S A;  1IZN B;  4C69 X;  2PRN A;  2ERV A;  4GCQ A;  3RBH A;  4RJW A;  4O3Y A;  1QJ9 A;  4JCH A;  5JDP A;  2Y0K A;  3AAE B;  3KVD D;  1HXU A;  1MM4 A;  2Y0H A;  4FES A;  4RL9 A;  1P4T A;  4FSP A;  6PRN A;  2JMM A;  5DL6 A;  1ORM A;  1PHO A;  2Y2X A;  2XE3 A;  3AA6 B;  3TZG A;  4BUM X;  5ADX L;  1MPF A;  4O3W A;  1HXX A;  4AFK A;  4O3Z A;  4O3X B;  3AA1 B;  4RLB A;  2YPV A;  3VE2 A;  4FMS A;  1GFP A;  3LK2 B;  4Z3T A;  4GCS A;  4KRA A;  4FOZ A;  3AA0 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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