3VZWX

Crystal structure of outer membrane protein porb from neisseria meningitidis in complex with galactose
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
341
structure length
341
Chain Sequence
QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Membrane protein
molecule keywords outer membrane proteins
total genus 76
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vzwX00
3HWBA 1BH3A 3WI5A 4GCSA 4KRAA 3K19A 1OSMA 4GCQA 3T0SA 3A2SX 1MPFA 5PRNA 2O4VA 3UPGA 6PRNA 1GFPA 8PRNA 3POXA 4D5UA 3SZVA 2QTKA 2J4UP 4FSPA 2K4TA 7PRNA 3JTYA 1HXXA 1H6S1 3SYSA 4FSOA 3SY9A 2Y0KA 4LSEA 4LSHA 4RJXA 2PRNA 4BUMX 1HXTA 2PORA 5DL6A 3T24A 4C69X 4KR4A 4FRXA 4JFBA 2ZLDA 4LSFA 2Y2XA 3VY9X 1PRNA 1GFNA 2ODJA 4LSIA 3SZDA 2XE2A 3NSGA 1OPFA 3T20A 4AUIA 2OMFA 5FVNA 3WI4A 3FYXA 2Y0LA 4KR8A 4D64A 3EMNX 5DL5A 2XG6A 2XE3A 3VY8X 4FRTA 2ZFGA 4D65A 5JDPA 3POUA 3PORA 1PHOA 2Y0HA 2XE1A 5DL8A 1GFQA 3HW9A 3PRNA 1HXUA 3VZUX 1BT9A 4FOZA 3VZWX 3SYBA 4GCPA 2J1NA 1GFMA 3POQA 3O0EA 2FGQX 2XE5A 1E54A 1GFOA 4FMSA 2FGRA 3VZTX 4RJWA 5DL7A 3UU2A 4FT6A 3SY7A
chains in the Genus database with same CATH superfamily
2ERVA 3HWBA 1BH3A 5DL7A 2R4LA 3DA4A 1QJ8A 4E1SA 3WI5A 3LK3B 4GCSA 3UAQA 3G7GA 1BXWA 4O49A 4KRAA 3JCUO 3K19A 1OSMA 4GCQA 3LK2B 4FZLA 4N75A 3LK42 4O3WA 3T0SA 1ORMA 3A2SX 1MPFA 4K3BA 4AYEC 5B66O 5PRNA 5IYUA 2W81C 3DWOX 1THQA 2O4VA 3WU2O 3UPGA 6PRNA 3BRYA 2KZ7A 3PF1A 4O3XB 3RBHA 5G39A 3AAEB 4O3YA 1Q9GA 3LK2A 5T5FA 1GFPA 8PRNA 4RL9A 4N58A 2K0LA 1YS5A 1P4TA 2YPVA 3POXA 5G38A 2N2MA 3SZVA 2QTKA 2R4OA 4D5UA 5GV0A 4FSPA 4E1TA 2J4UP 2K4TA 2GE4A 4B61A 7PRNA 1QJPA 1IZNB 1ZHZA 1HXXA 3JTYA 1H6S1 5H2FO 3SYSA 4FSOA 1S5LO 4AYNA 3GP6A 3SY9A 2Y0KA 4K3CA 3AA0A 5D5DA 5B5EO 2XTQA 2KXPA 2LHFA 4FZNA 4LSEA 4XNLA 4AFKA 2M07A 3AA1B 2LFUA 4LSHA 2JMMA 4O4XA 4RJXA 5TISO 3AAAB 2PRNA 5KAIO 4BUMX 1HXTA 2PORA 2R4NA 1IZNA 4AYDC 2M06A 1G90A 1ZHTA 4RJWA 5DL6A 3T24A 4C69X 1T16A 2R8AA 2WJQA 2WVPA 3VE2A 4KR4A 4CTDA 4FRXA 3NJTA 2KXPB 4JFBA 5AFUK 5G3AA 1ZHYA 3PGSA 2MHLA 2ZLDA 2Y2XA 4LSFA 3KVDD 3VY9X 4AYMC 2KZ7B 4IL6O 4RLBA 3UU2A 1PRNA 1GFNA 2F1TA 2ODJA 4LSIA 3SZDA 3BS0A 2X27X 2R4PA 2XE2A 4O4UA 4UB8O 5AFUL 5GTHO 2W80C 3NSGA 4C00A 4G75A 1OPFA 3T20A 4O3ZA 4AUIA 2OMFA 2X9KA 5FVNA 3PQUA 4AKMA 2N2LA 5ADXL 3DWNA 3LK3A 4JCHA 3WI4A 3FYXA 3QRCA 3HOLA 2AXTO 2Y0LA 4KR8A 4D64A 3EMNX 4FZMA 3A0BO 5DL5A 3QRAA 4FESA 2XG6A 3PGRA 2XE3A 1MM5A 1Q9FA 4UB6O 5G26A 2JQYA 3VY8X 2MNHA 2ZFGA 3PQSA 4FRTA 4D65A 4Z3TA 3POUA 5JDPA 2F1CX 3PORA 1PHOA 4GHBA 3V8UA 2F1VA 2Y0HA 3AA6B 3AA7A 3VE1A 5DL8A 1GFQA 5E79O 4N59A 2KDYA 3HW9A 3PRNA 2KC0A 3DZMA 3A0HO 4GF4A 1HXUA 2IWVA 2XMXA 1BT9A 4QQ1A 5GTIO 3VZUX 4FOZA 3VZWX 3TZGA 3AA1A 4AZLA 4C4VA 1ZHWA 2R89A 4U9CA 3BRZA 3KZIO 3SYBA 4PR7A 4GCPA 5KAFO 2J1NA 1GFMA 4AKRB 4F4BA 3LK41 3POQA 4PJ0O 3C5OA 5ADXK 1ZHXA 3AAAA 3O0EA 3AA7B 2FGQX 2R88A 3AA6A 2XE5A 4AKRA 1E54A 2WJRA 4RLCA 1MM4A 2XTRA 3DA3A 4FUVA 5EE2A 1GFOA 4PUXA 3PGUA 3AA0B 2FGRA 4FMSA 4C4VB 4AYID 4N74A 2IWWA 3AAEA 3VZTX 4G76A 3HOEA 1T1LA 2YNKA 2XE1A 4FQEA 4XNKA 1QJ9A 2Y7SA 4FT6A 3SY7A
chains in the Genus database with same CATH topology
2ERVA 3HWBA 1BH3A 3DA4A 1QJ8A 4E1SA 3WI5A 3LK3B 4GCSA 3UAQA 3G7GA 1BXWA 4O49A 4KRAA 3K19A 1OSMA 4GCQA 3LK2B 4FZLA 3LK42 4O3WA 3T0SA 1ORMA 3A2SX 1MPFA 4AYEC 5IYUA 5PRNA 2W81C 1THQA 2O4VA 3UPGA 6PRNA 2KZ7A 3RBHA 4O3XB 3AAEB 4O3YA 1Q9GA 3LK2A 5T5FA 1GFPA 8PRNA 4RL9A 4N58A 2K0LA 1YS5A 1P4TA 2YPVA 3POXA 4D5UA 2N2MA 3SZVA 2QTKA 5GV0A 2J4UP 4FSPA 4E1TA 2K4TA 2GE4A 4B61A 7PRNA 1QJPA 1IZNB 1ZHZA 1HXXA 3JTYA 1H6S1 3SYSA 4FSOA 4AYNA 3GP6A 3SY9A 2Y0KA 3AA0A 5D5DA 2XTQA 2KXPA 2LHFA 4FZNA 4LSEA 4XNLA 4AFKA 2M07A 3AA1B 2LFUA 4LSHA 2JMMA 4O4XA 4RJXA 3AAAB 2PRNA 4BUMX 1HXTA 2PORA 1IZNA 4AYDC 2M06A 1G90A 1ZHTA 4RJWA 5DL6A 3T24A 4C69X 3VE2A 4KR4A 4FRXA 4JFBA 2KXPB 5AFUK 1ZHYA 2MHLA 2ZLDA 2Y2XA 4LSFA 3KVDD 3VY9X 4AYMC 2KZ7B 4RLBA 1PRNA 1GFNA 2F1TA 2ODJA 4LSIA 3SZDA 5AFUL 2X27X 2XE2A 4O4UA 2W80C 3NSGA 4G75A 1OPFA 3T20A 4O3ZA 4AUIA 2OMFA 5FVNA 4AKMA 3PQUA 5ADXL 2N2LA 3LK3A 4JCHA 3WI4A 3FYXA 3QRCA 3HOLA 2Y0LA 4KR8A 4D64A 3EMNX 4FZMA 5DL5A 3QRAA 4FESA 2XG6A 2XE3A 1MM5A 1Q9FA 5G26A 3VY8X 2MNHA 2ZFGA 3PQSA 4FRTA 4D65A 4Z3TA 3POUA 5JDPA 3PORA 1PHOA 4GHBA 3V8UA 2F1VA 2Y0HA 3AA6B 3AA7A 3VE1A 5DL8A 1GFQA 4N59A 2KDYA 3HW9A 3PRNA 2KC0A 4QQ1A 4GF4A 1HXUA 3VZUX 2XMXA 1BT9A 4FOZA 3VZWX 3TZGA 3AA1A 4AZLA 1ZHWA 4U9CA 3SYBA 4GCPA 2J1NA 1GFMA 4AKRB 4F4BA 3LK41 3POQA 3C5OA 5ADXK 1ZHXA 3AAAA 3O0EA 3AA7B 2FGQX 3AA6A 2XE5A 4AKRA 1E54A 4RLCA 1MM4A 2XTRA 3DA3A 4FUVA 5EE2A 1GFOA 4PUXA 3AA0B 2FGRA 4FMSA 4AYID 3AAEA 3VZTX 4G76A 3HOEA 4XNKA 2YNKA 2XE1A 5DL7A 3UU2A 1QJ9A 2Y7SA 4FT6A 3SY7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HWB A;  1BH3 A;  3WI5 A;  4GCS A;  4KRA A;  3K19 A;  1OSM A;  4GCQ A;  3T0S A;  3A2S X;  1MPF A;  5PRN A;  2O4V A;  3UPG A;  6PRN A;  1GFP A;  8PRN A;  3POX A;  4D5U A;  3SZV A;  2QTK A;  2J4U P;  4FSP A;  2K4T A;  7PRN A;  3JTY A;  1HXX A;  1H6S 1;  3SYS A;  4FSO A;  3SY9 A;  2Y0K A;  4LSE A;  4LSH A;  4RJX A;  2PRN A;  4BUM X;  1HXT A;  2POR A;  5DL6 A;  3T24 A;  4C69 X;  4KR4 A;  4FRX A;  4JFB A;  2ZLD A;  4LSF A;  2Y2X A;  3VY9 X;  1PRN A;  1GFN A;  2ODJ A;  4LSI A;  3SZD A;  2XE2 A;  3NSG A;  1OPF A;  3T20 A;  4AUI A;  2OMF A;  5FVN A;  3WI4 A;  3FYX A;  2Y0L A;  4KR8 A;  4D64 A;  3EMN X;  5DL5 A;  2XG6 A;  2XE3 A;  3VY8 X;  4FRT A;  2ZFG A;  4D65 A;  5JDP A;  3POU A;  3POR A;  1PHO A;  2Y0H A;  2XE1 A;  5DL8 A;  1GFQ A;  3HW9 A;  3PRN A;  1HXU A;  3VZU X;  1BT9 A;  4FOZ A;  3VZW X;  3SYB A;  4GCP A;  2J1N A;  1GFM A;  3POQ A;  3O0E A;  2FGQ X;  2XE5 A;  1E54 A;  1GFO A;  4FMS A;  2FGR A;  3VZT X;  4RJW A;  5DL7 A;  3UU2 A;  4FT6 A;  3SY7 A; 
#chains in the Genus database with same CATH topology
 2ERV A;  3HWB A;  1BH3 A;  5DL7 A;  2R4L A;  3DA4 A;  1QJ8 A;  4E1S A;  3WI5 A;  3LK3 B;  4GCS A;  3UAQ A;  3G7G A;  1BXW A;  4O49 A;  4KRA A;  3JCU O;  3K19 A;  1OSM A;  4GCQ A;  3LK2 B;  4FZL A;  4N75 A;  3LK4 2;  4O3W A;  3T0S A;  1ORM A;  3A2S X;  1MPF A;  4K3B A;  4AYE C;  5B66 O;  5PRN A;  5IYU A;  2W81 C;  3DWO X;  1THQ A;  2O4V A;  3WU2 O;  3UPG A;  6PRN A;  3BRY A;  2KZ7 A;  3PF1 A;  4O3X B;  3RBH A;  5G39 A;  3AAE B;  4O3Y A;  1Q9G A;  3LK2 A;  5T5F A;  1GFP A;  8PRN A;  4RL9 A;  4N58 A;  2K0L A;  1YS5 A;  1P4T A;  2YPV A;  3POX A;  5G38 A;  2N2M A;  3SZV A;  2QTK A;  2R4O A;  4D5U A;  5GV0 A;  4FSP A;  4E1T A;  2J4U P;  2K4T A;  2GE4 A;  4B61 A;  7PRN A;  1QJP A;  1IZN B;  1ZHZ A;  1HXX A;  3JTY A;  1H6S 1;  5H2F O;  3SYS A;  4FSO A;  1S5L O;  4AYN A;  3GP6 A;  3SY9 A;  2Y0K A;  4K3C A;  3AA0 A;  5D5D A;  5B5E O;  2XTQ A;  2KXP A;  2LHF A;  4FZN A;  4LSE A;  4XNL A;  4AFK A;  2M07 A;  3AA1 B;  2LFU A;  4LSH A;  2JMM A;  4O4X A;  4RJX A;  5TIS O;  3AAA B;  2PRN A;  5KAI O;  4BUM X;  1HXT A;  2POR A;  2R4N A;  1IZN A;  4AYD C;  2M06 A;  1G90 A;  1ZHT A;  4RJW A;  5DL6 A;  3T24 A;  4C69 X;  1T16 A;  2R8A A;  2WJQ A;  2WVP A;  3VE2 A;  4KR4 A;  4CTD A;  4FRX A;  3NJT A;  2KXP B;  4JFB A;  5AFU K;  5G3A A;  1ZHY A;  3PGS A;  2MHL A;  2ZLD A;  2Y2X A;  4LSF A;  3KVD D;  3VY9 X;  4AYM C;  2KZ7 B;  4IL6 O;  4RLB A;  3UU2 A;  1PRN A;  1GFN A;  2F1T A;  2ODJ A;  4LSI A;  3SZD A;  3BS0 A;  2X27 X;  2R4P A;  2XE2 A;  4O4U A;  4UB8 O;  5AFU L;  5GTH O;  2W80 C;  3NSG A;  4C00 A;  4G75 A;  1OPF A;  3T20 A;  4O3Z A;  4AUI A;  2OMF A;  2X9K A;  5FVN A;  3PQU A;  4AKM A;  2N2L A;  5ADX L;  3DWN A;  3LK3 A;  4JCH A;  3WI4 A;  3FYX A;  3QRC A;  3HOL A;  2AXT O;  2Y0L A;  4KR8 A;  4D64 A;  3EMN X;  4FZM A;  3A0B O;  5DL5 A;  3QRA A;  4FES A;  2XG6 A;  3PGR A;  2XE3 A;  1MM5 A;  1Q9F A;  4UB6 O;  5G26 A;  2JQY A;  3VY8 X;  2MNH A;  2ZFG A;  3PQS A;  4FRT A;  4D65 A;  4Z3T A;  3POU A;  5JDP A;  2F1C X;  3POR A;  1PHO A;  4GHB A;  3V8U A;  2F1V A;  2Y0H A;  3AA6 B;  3AA7 A;  3VE1 A;  5DL8 A;  1GFQ A;  5E79 O;  4N59 A;  2KDY A;  3HW9 A;  3PRN A;  2KC0 A;  3DZM A;  3A0H O;  4GF4 A;  1HXU A;  2IWV A;  2XMX A;  1BT9 A;  4QQ1 A;  5GTI O;  3VZU X;  4FOZ A;  3VZW X;  3TZG A;  3AA1 A;  4AZL A;  4C4V A;  1ZHW A;  2R89 A;  4U9C A;  3BRZ A;  3KZI O;  3SYB A;  4PR7 A;  4GCP A;  5KAF O;  2J1N A;  1GFM A;  4AKR B;  4F4B A;  3LK4 1;  3POQ A;  4PJ0 O;  3C5O A;  5ADX K;  1ZHX A;  3AAA A;  3O0E A;  3AA7 B;  2FGQ X;  2R88 A;  3AA6 A;  2XE5 A;  4AKR A;  1E54 A;  2WJR A;  4RLC A;  1MM4 A;  2XTR A;  3DA3 A;  4FUV A;  5EE2 A;  1GFO A;  4PUX A;  3PGU A;  3AA0 B;  2FGR A;  4FMS A;  4C4V B;  4AYI D;  4N74 A;  2IWW A;  3AAE A;  3VZT X;  4G76 A;  3HOE A;  1T1L A;  2YNK A;  2XE1 A;  4FQE A;  4XNK A;  1QJ9 A;  2Y7S A;  4FT6 A;  3SY7 A; 
#chains in the Genus database with same CATH homology
 2ERV A;  3HWB A;  1BH3 A;  3DA4 A;  1QJ8 A;  4E1S A;  3WI5 A;  3LK3 B;  4GCS A;  3UAQ A;  3G7G A;  1BXW A;  4O49 A;  4KRA A;  3K19 A;  1OSM A;  4GCQ A;  3LK2 B;  4FZL A;  3LK4 2;  4O3W A;  3T0S A;  1ORM A;  3A2S X;  1MPF A;  4AYE C;  5IYU A;  5PRN A;  2W81 C;  1THQ A;  2O4V A;  3UPG A;  6PRN A;  2KZ7 A;  3RBH A;  4O3X B;  3AAE B;  4O3Y A;  1Q9G A;  3LK2 A;  5T5F A;  1GFP A;  8PRN A;  4RL9 A;  4N58 A;  2K0L A;  1YS5 A;  1P4T A;  2YPV A;  3POX A;  4D5U A;  2N2M A;  3SZV A;  2QTK A;  5GV0 A;  2J4U P;  4FSP A;  4E1T A;  2K4T A;  2GE4 A;  4B61 A;  7PRN A;  1QJP A;  1IZN B;  1ZHZ A;  1HXX A;  3JTY A;  1H6S 1;  3SYS A;  4FSO A;  4AYN A;  3GP6 A;  3SY9 A;  2Y0K A;  3AA0 A;  5D5D A;  2XTQ A;  2KXP A;  2LHF A;  4FZN A;  4LSE A;  4XNL A;  4AFK A;  2M07 A;  3AA1 B;  2LFU A;  4LSH A;  2JMM A;  4O4X A;  4RJX A;  3AAA B;  2PRN A;  4BUM X;  1HXT A;  2POR A;  1IZN A;  4AYD C;  2M06 A;  1G90 A;  1ZHT A;  4RJW A;  5DL6 A;  3T24 A;  4C69 X;  3VE2 A;  4KR4 A;  4FRX A;  4JFB A;  2KXP B;  5AFU K;  1ZHY A;  2MHL A;  2ZLD A;  2Y2X A;  4LSF A;  3KVD D;  3VY9 X;  4AYM C;  2KZ7 B;  4RLB A;  1PRN A;  1GFN A;  2F1T A;  2ODJ A;  4LSI A;  3SZD A;  5AFU L;  2X27 X;  2XE2 A;  4O4U A;  2W80 C;  3NSG A;  4G75 A;  1OPF A;  3T20 A;  4O3Z A;  4AUI A;  2OMF A;  5FVN A;  4AKM A;  3PQU A;  5ADX L;  2N2L A;  3LK3 A;  4JCH A;  3WI4 A;  3FYX A;  3QRC A;  3HOL A;  2Y0L A;  4KR8 A;  4D64 A;  3EMN X;  4FZM A;  5DL5 A;  3QRA A;  4FES A;  2XG6 A;  2XE3 A;  1MM5 A;  1Q9F A;  5G26 A;  3VY8 X;  2MNH A;  2ZFG A;  3PQS A;  4FRT A;  4D65 A;  4Z3T A;  3POU A;  5JDP A;  3POR A;  1PHO A;  4GHB A;  3V8U A;  2F1V A;  2Y0H A;  3AA6 B;  3AA7 A;  3VE1 A;  5DL8 A;  1GFQ A;  4N59 A;  2KDY A;  3HW9 A;  3PRN A;  2KC0 A;  4QQ1 A;  4GF4 A;  1HXU A;  3VZU X;  2XMX A;  1BT9 A;  4FOZ A;  3VZW X;  3TZG A;  3AA1 A;  4AZL A;  1ZHW A;  4U9C A;  3SYB A;  4GCP A;  2J1N A;  1GFM A;  4AKR B;  4F4B A;  3LK4 1;  3POQ A;  3C5O A;  5ADX K;  1ZHX A;  3AAA A;  3O0E A;  3AA7 B;  2FGQ X;  3AA6 A;  2XE5 A;  4AKR A;  1E54 A;  4RLC A;  1MM4 A;  2XTR A;  3DA3 A;  4FUV A;  5EE2 A;  1GFO A;  4PUX A;  3AA0 B;  2FGR A;  4FMS A;  4AYI D;  3AAE A;  3VZT X;  4G76 A;  3HOE A;  4XNK A;  2YNK A;  2XE1 A;  5DL7 A;  3UU2 A;  1QJ9 A;  2Y7S A;  4FT6 A;  3SY7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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