3VZWX

Crystal structure of outer membrane protein porb from neisseria meningitidis in complex with galactose
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
341
structure length
341
Chain Sequence
b'QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords outer membrane proteins
publication title Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Membrane protein
total genus 76
structure length 341
sequence length 341
ec nomenclature
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3vzwX00
4D65A 2FGQX 7PRNA 3HW9A 3VZTX 2ODJA 3POQA 3O0EA 6PRNA 2ZLDA 5DL6A 3T0SA 3SY7A 4LSIA 2O4VA 4RJXA 1BH3A 1H6S1 2XE3A 1HXTA 4LSHA 4BUMX 4KRAA 4RJWA 1PHOA 1HXUA 3SYBA 2XG6A 2PRNA 1GFQA 4GCPA 3SYSA 3SZDA 1GFOA 3VY9X 1GFMA 3UPGA 3A2SX 3POXA 5DL5A 3T20A 2XE2A 1HXXA 5DL8A 3FYXA 4FT6A 8PRNA 3EMNX 5JDPA 1E54A 4FRXA 4JFBA 2XE1A 2FGRA 3K19A 2ZFGA 2K4TA 2Y2XA 3VZWX 4FRTA 4FSPA 4GCQA 3T24A 3UU2A 2PORA 2Y0KA 2J1NA 4D5UA 5PRNA 4GCSA 4AUIA 1MPFA 4C69X 5FVNA 4LSFA 1OPFA 3SZVA 1OSMA 3WI4A 3SY9A 2Y0LA 4KR8A 5DL7A 1BT9A 3NSGA 4LSEA 3PORA 3PRNA 1PRNA 4FMSA 3POUA 4FSOA 3WI5A 2QTKA 4KR4A 4D64A 4FOZA 2Y0HA 3JTYA 3HWBA 3VY8X 1GFPA 2XE5A 3VZUX 2J4UP 2OMFA 1GFNA
chains in the Genus database with same CATH superfamily
4F4BA 5IYUA 4D65A 2FGQX 4FUVA 2K0LA 2X27X 3AAAB 7PRNA 3HW9A 2Y7SA 4GF4A 4FESA 3VZTX 1P4TA 2ODJA 2R4NA 3POQA 5KAFO 4AKMA 4AZLA 3O0EA 4GHBA 6PRNA 4UB6O 2M07A 3BRYA 2X9KA 2R88A 2ZLDA 1THQA 4C4VB 4N58A 4PJ0O 3LK3B 1ORMA 4XNKA 5DL6A 1ZHTA 3T0SA 3SY7A 2JMMA 3BS0A 4LSIA 4O4UA 2O4VA 3T20A 4RJXA 2R4LA 3PGRA 3G7GA 1BH3A 4K3CA 4Z3TA 3PQSA 5ADXL 1H6S1 2XE3A 3KZIO 4AYEC 3UAQA 1HXTA 4LSHA 4O3XB 5AFUL 3C5OA 2WVPA 3DA3A 3TZGA 4AYID 4BUMX 4AYDC 4KRAA 4RJWA 1PHOA 1HXUA 3PF1A 3PQUA 4O4XA 2XG6A 3SYBA 4AFKA 2PRNA 3AA7B 2R89A 3WI4A 3A0HO 1GFQA 4GCPA 2LHFA 2XTRA 3SYSA 1MM5A 3SZDA 3LK42 2F1VA 2KZ7A 2IWWA 2XTQA 1GFOA 5D5DA 3VY9X 1GFMA 4O49A 3UPGA 3A2SX 3POXA 3AAEA 5T5FA 4AKRA 3JCUO 3AA1A 2IWVA 2JQYA 4FZLA 4N74A 2GE4A 2XMXA 2XE2A 4N59A 5DL5A 1HXXA 5DL8A 5EE2A 5B66O 3FYXA 4FT6A 8PRNA 3EMNX 5GTIO 1E54A 3AA6A 2KC0A 4FRXA 4O3YA 5JDPA 3A0BO 3KVDD 4JFBA 2XE1A 4IL6O 2R4PA 2LFUA 2KXPA 5G3AA 4C00A 2W81C 3UU2A 5AFUK 1Q9FA 2FGRA 5B5EO 3K19A 2KZ7B 2ZFGA 2N2LA 2K4TA 4AYMC 3LK2A 4PR7A 4QQ1A 2ERVA 4AYNA 2Y2XA 1Q9GA 3AAAA 3VZWX 4FRTA 4B61A 2YPVA 3AAEB 3PGUA 4K3BA 4FSPA 4GCQA 5G26A 3T24A 3BRZA 2PORA 2Y0KA 1ZHZA 2J1NA 1QJ9A 3AA1B 4D5UA 5H2FO 1T16A 5PRNA 4E1SA 1MM4A 4O3ZA 4AKRB 4C4VA 4GCSA 4RL9A 4AUIA 3AA6B 1MPFA 4C69X 3GP6A 5FVNA 4LSFA 2AXTO 5TISO 1OPFA 3AA0A 2KXPB 3SZVA 4PUXA 1OSMA 1T1LA 4FZMA 2W80C 5ADXK 3HOLA 1ZHYA 1QJ8A 1BXWA 1IZNA 1YS5A 2R4OA 2F1CX 4XNLA 3SY9A 3V8UA 3LK2B 2Y0LA 3DA4A 4FQEA 4KR8A 4RLCA 1BT9A 3NSGA 1QJPA 1ZHWA 5DL7A 4CTDA 4LSEA 3LK41 3PORA 3PRNA 3RBHA 1S5LO 4G75A 1PRNA 3DZMA 3POUA 4FMSA 4FZNA 4G76A 4N75A 4RLBA 4U9CA 3QRAA 5E79O 5GV0A 3AA7A 3QRCA 5G39A 3WU2O 4FSOA 3WI5A 1ZHXA 2QTKA 1G90A 4KR4A 4D64A 3AA0B 4FOZA 2F1TA 2Y0HA 3NJTA 4JCHA 3DWOX 4O3WA 4E1TA 3VE1A 5GTHO 3JTYA 3VE2A 2KDYA 3LK3A 2MHLA 1IZNB 3HWBA 2MNHA 3VY8X 1GFPA 4UB8O 2XE5A 5G38A 2YNKA 2N2MA 3VZUX 2M06A 3HOEA 5KAIO 2R8AA 2J4UP 2OMFA 3DWNA 1GFNA 2WJQA 2WJRA 3PGSA
chains in the Genus database with same CATH topology
4F4BA 5IYUA 4D65A 2FGQX 4FUVA 2K0LA 2X27X 3AAAB 7PRNA 3HW9A 2Y7SA 4GF4A 4FESA 3VZTX 1P4TA 2ODJA 3POQA 4AKMA 4AZLA 3O0EA 4GHBA 6PRNA 2M07A 2ZLDA 1THQA 4N58A 3LK3B 1ORMA 4XNKA 5DL6A 1ZHTA 3T0SA 3SY7A 2JMMA 4LSIA 4O4UA 2O4VA 4RJXA 3G7GA 1BH3A 4Z3TA 3PQSA 5ADXL 1H6S1 2XE3A 4AYEC 3UAQA 1HXTA 4LSHA 4O3XB 5AFUL 3C5OA 3DA3A 3TZGA 4AYID 4BUMX 4AYDC 4KRAA 4RJWA 1PHOA 1HXUA 4O4XA 3PQUA 3SYBA 2XG6A 4AFKA 2PRNA 3AA7B 1GFQA 4GCPA 2LHFA 2XTRA 3SYSA 1MM5A 3SZDA 3LK42 2F1VA 2KZ7A 2XTQA 1GFOA 5D5DA 3VY9X 1GFMA 4O49A 3UPGA 3A2SX 3POXA 3AAEA 5T5FA 4AKRA 3AA1A 4FZLA 5DL5A 3T20A 2GE4A 2XMXA 2XE2A 4N59A 1HXXA 5DL8A 5EE2A 3FYXA 4FT6A 8PRNA 3EMNX 5JDPA 1E54A 3AA6A 2KC0A 4FRXA 4O3YA 3KVDD 4JFBA 2XE1A 2KXPA 2LFUA 2W81C 5AFUK 1Q9FA 2FGRA 3K19A 2KZ7B 2ZFGA 2N2LA 2K4TA 4AYMC 3LK2A 4QQ1A 2ERVA 2Y2XA 1Q9GA 3AAAA 3VZWX 4FRTA 4B61A 2YPVA 3AAEB 4FSPA 4GCQA 5G26A 3T24A 3UU2A 2PORA 2Y0KA 1ZHZA 2J1NA 1QJ9A 3AA1B 4D5UA 5PRNA 4E1SA 1MM4A 4O3ZA 4AKRB 4GCSA 4RL9A 4AUIA 3AA6B 1MPFA 4C69X 3GP6A 5FVNA 4LSFA 1OPFA 3AA0A 2KXPB 3SZVA 4PUXA 1OSMA 4FZMA 2W80C 5ADXK 3HOLA 1ZHYA 1QJ8A 1BXWA 1IZNA 1YS5A 3SY9A 3V8UA 4XNLA 3WI4A 4AYNA 3LK2B 2Y0LA 3DA4A 4KR8A 4RLCA 1BT9A 3NSGA 1QJPA 1ZHWA 5DL7A 4LSEA 3LK41 3PORA 3PRNA 3RBHA 4G75A 4RLBA 1PRNA 4FMSA 3POUA 4FZNA 4G76A 4U9CA 4E1TA 3QRAA 5GV0A 3AA7A 3QRCA 4FSOA 3WI5A 1ZHXA 2QTKA 1G90A 4KR4A 4D64A 3AA0B 4FOZA 2F1TA 2Y0HA 4JCHA 4O3WA 3VE1A 3JTYA 3VE2A 2KDYA 3LK3A 2MHLA 1IZNB 3HWBA 2MNHA 3VY8X 1GFPA 2XE5A 2YNKA 2N2MA 3VZUX 2M06A 3HOEA 2J4UP 2OMFA 1GFNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D65 A;  2FGQ X;  7PRN A;  3HW9 A;  3VZT X;  2ODJ A;  3POQ A;  3O0E A;  6PRN A;  2ZLD A;  5DL6 A;  3T0S A;  3SY7 A;  4LSI A;  2O4V A;  4RJX A;  1BH3 A;  1H6S 1;  2XE3 A;  1HXT A;  4LSH A;  4BUM X;  4KRA A;  4RJW A;  1PHO A;  1HXU A;  3SYB A;  2XG6 A;  2PRN A;  1GFQ A;  4GCP A;  3SYS A;  3SZD A;  1GFO A;  3VY9 X;  1GFM A;  3UPG A;  3A2S X;  3POX A;  5DL5 A;  3T20 A;  2XE2 A;  1HXX A;  5DL8 A;  3FYX A;  4FT6 A;  8PRN A;  3EMN X;  5JDP A;  1E54 A;  4FRX A;  4JFB A;  2XE1 A;  2FGR A;  3K19 A;  2ZFG A;  2K4T A;  2Y2X A;  3VZW X;  4FRT A;  4FSP A;  4GCQ A;  3T24 A;  3UU2 A;  2POR A;  2Y0K A;  2J1N A;  4D5U A;  5PRN A;  4GCS A;  4AUI A;  1MPF A;  4C69 X;  5FVN A;  4LSF A;  1OPF A;  3SZV A;  1OSM A;  3WI4 A;  3SY9 A;  2Y0L A;  4KR8 A;  5DL7 A;  1BT9 A;  3NSG A;  4LSE A;  3POR A;  3PRN A;  1PRN A;  4FMS A;  3POU A;  4FSO A;  3WI5 A;  2QTK A;  4KR4 A;  4D64 A;  4FOZ A;  2Y0H A;  3JTY A;  3HWB A;  3VY8 X;  1GFP A;  2XE5 A;  3VZU X;  2J4U P;  2OMF A;  1GFN A; 
#chains in the Genus database with same CATH topology
 4F4B A;  5IYU A;  4D65 A;  2FGQ X;  4FUV A;  2K0L A;  2X27 X;  3AAA B;  7PRN A;  3HW9 A;  2Y7S A;  4GF4 A;  4FES A;  3VZT X;  1P4T A;  2ODJ A;  2R4N A;  3POQ A;  5KAF O;  4AKM A;  4AZL A;  3O0E A;  4GHB A;  6PRN A;  4UB6 O;  2M07 A;  3BRY A;  2X9K A;  2R88 A;  2ZLD A;  1THQ A;  4C4V B;  4N58 A;  4PJ0 O;  3LK3 B;  1ORM A;  4XNK A;  5DL6 A;  1ZHT A;  3T0S A;  3SY7 A;  2JMM A;  3BS0 A;  4LSI A;  4O4U A;  2O4V A;  3T20 A;  4RJX A;  2R4L A;  3PGR A;  3G7G A;  1BH3 A;  4K3C A;  4Z3T A;  3PQS A;  5ADX L;  1H6S 1;  2XE3 A;  3KZI O;  4AYE C;  3UAQ A;  1HXT A;  4LSH A;  4O3X B;  5AFU L;  3C5O A;  2WVP A;  3DA3 A;  3TZG A;  4AYI D;  4BUM X;  4AYD C;  4KRA A;  4RJW A;  1PHO A;  1HXU A;  3PF1 A;  3PQU A;  4O4X A;  2XG6 A;  3SYB A;  4AFK A;  2PRN A;  3AA7 B;  2R89 A;  3WI4 A;  3A0H O;  1GFQ A;  4GCP A;  2LHF A;  2XTR A;  3SYS A;  1MM5 A;  3SZD A;  3LK4 2;  2F1V A;  2KZ7 A;  2IWW A;  2XTQ A;  1GFO A;  5D5D A;  3VY9 X;  1GFM A;  4O49 A;  3UPG A;  3A2S X;  3POX A;  3AAE A;  5T5F A;  4AKR A;  3JCU O;  3AA1 A;  2IWV A;  2JQY A;  4FZL A;  4N74 A;  2GE4 A;  2XMX A;  2XE2 A;  4N59 A;  5DL5 A;  1HXX A;  5DL8 A;  5EE2 A;  5B66 O;  3FYX A;  4FT6 A;  8PRN A;  3EMN X;  5GTI O;  1E54 A;  3AA6 A;  2KC0 A;  4FRX A;  4O3Y A;  5JDP A;  3A0B O;  3KVD D;  4JFB A;  2XE1 A;  4IL6 O;  2R4P A;  2LFU A;  2KXP A;  5G3A A;  4C00 A;  2W81 C;  3UU2 A;  5AFU K;  1Q9F A;  2FGR A;  5B5E O;  3K19 A;  2KZ7 B;  2ZFG A;  2N2L A;  2K4T A;  4AYM C;  3LK2 A;  4PR7 A;  4QQ1 A;  2ERV A;  4AYN A;  2Y2X A;  1Q9G A;  3AAA A;  3VZW X;  4FRT A;  4B61 A;  2YPV A;  3AAE B;  3PGU A;  4K3B A;  4FSP A;  4GCQ A;  5G26 A;  3T24 A;  3BRZ A;  2POR A;  2Y0K A;  1ZHZ A;  2J1N A;  1QJ9 A;  3AA1 B;  4D5U A;  5H2F O;  1T16 A;  5PRN A;  4E1S A;  1MM4 A;  4O3Z A;  4AKR B;  4C4V A;  4GCS A;  4RL9 A;  4AUI A;  3AA6 B;  1MPF A;  4C69 X;  3GP6 A;  5FVN A;  4LSF A;  2AXT O;  5TIS O;  1OPF A;  3AA0 A;  2KXP B;  3SZV A;  4PUX A;  1OSM A;  1T1L A;  4FZM A;  2W80 C;  5ADX K;  3HOL A;  1ZHY A;  1QJ8 A;  1BXW A;  1IZN A;  1YS5 A;  2R4O A;  2F1C X;  4XNL A;  3SY9 A;  3V8U A;  3LK2 B;  2Y0L A;  3DA4 A;  4FQE A;  4KR8 A;  4RLC A;  1BT9 A;  3NSG A;  1QJP A;  1ZHW A;  5DL7 A;  4CTD A;  4LSE A;  3LK4 1;  3POR A;  3PRN A;  3RBH A;  1S5L O;  4G75 A;  1PRN A;  3DZM A;  3POU A;  4FMS A;  4FZN A;  4G76 A;  4N75 A;  4RLB A;  4U9C A;  3QRA A;  5E79 O;  5GV0 A;  3AA7 A;  3QRC A;  5G39 A;  3WU2 O;  4FSO A;  3WI5 A;  1ZHX A;  2QTK A;  1G90 A;  4KR4 A;  4D64 A;  3AA0 B;  4FOZ A;  2F1T A;  2Y0H A;  3NJT A;  4JCH A;  3DWO X;  4O3W A;  4E1T A;  3VE1 A;  5GTH O;  3JTY A;  3VE2 A;  2KDY A;  3LK3 A;  2MHL A;  1IZN B;  3HWB A;  2MNH A;  3VY8 X;  1GFP A;  4UB8 O;  2XE5 A;  5G38 A;  2YNK A;  2N2M A;  3VZU X;  2M06 A;  3HOE A;  5KAI O;  2R8A A;  2J4U P;  2OMF A;  3DWN A;  1GFN A;  2WJQ A;  2WJR A;  3PGS A; 
#chains in the Genus database with same CATH homology
 4F4B A;  5IYU A;  4D65 A;  2FGQ X;  4FUV A;  2K0L A;  2X27 X;  3AAA B;  7PRN A;  3HW9 A;  2Y7S A;  4GF4 A;  4FES A;  3VZT X;  1P4T A;  2ODJ A;  3POQ A;  4AKM A;  4AZL A;  3O0E A;  4GHB A;  6PRN A;  2M07 A;  2ZLD A;  1THQ A;  4N58 A;  3LK3 B;  1ORM A;  4XNK A;  5DL6 A;  1ZHT A;  3T0S A;  3SY7 A;  2JMM A;  4LSI A;  4O4U A;  2O4V A;  4RJX A;  3G7G A;  1BH3 A;  4Z3T A;  3PQS A;  5ADX L;  1H6S 1;  2XE3 A;  4AYE C;  3UAQ A;  1HXT A;  4LSH A;  4O3X B;  5AFU L;  3C5O A;  3DA3 A;  3TZG A;  4AYI D;  4BUM X;  4AYD C;  4KRA A;  4RJW A;  1PHO A;  1HXU A;  4O4X A;  3PQU A;  3SYB A;  2XG6 A;  4AFK A;  2PRN A;  3AA7 B;  1GFQ A;  4GCP A;  2LHF A;  2XTR A;  3SYS A;  1MM5 A;  3SZD A;  3LK4 2;  2F1V A;  2KZ7 A;  2XTQ A;  1GFO A;  5D5D A;  3VY9 X;  1GFM A;  4O49 A;  3UPG A;  3A2S X;  3POX A;  3AAE A;  5T5F A;  4AKR A;  3AA1 A;  4FZL A;  5DL5 A;  3T20 A;  2GE4 A;  2XMX A;  2XE2 A;  4N59 A;  1HXX A;  5DL8 A;  5EE2 A;  3FYX A;  4FT6 A;  8PRN A;  3EMN X;  5JDP A;  1E54 A;  3AA6 A;  2KC0 A;  4FRX A;  4O3Y A;  3KVD D;  4JFB A;  2XE1 A;  2KXP A;  2LFU A;  2W81 C;  5AFU K;  1Q9F A;  2FGR A;  3K19 A;  2KZ7 B;  2ZFG A;  2N2L A;  2K4T A;  4AYM C;  3LK2 A;  4QQ1 A;  2ERV A;  2Y2X A;  1Q9G A;  3AAA A;  3VZW X;  4FRT A;  4B61 A;  2YPV A;  3AAE B;  4FSP A;  4GCQ A;  5G26 A;  3T24 A;  3UU2 A;  2POR A;  2Y0K A;  1ZHZ A;  2J1N A;  1QJ9 A;  3AA1 B;  4D5U A;  5PRN A;  4E1S A;  1MM4 A;  4O3Z A;  4AKR B;  4GCS A;  4RL9 A;  4AUI A;  3AA6 B;  1MPF A;  4C69 X;  3GP6 A;  5FVN A;  4LSF A;  1OPF A;  3AA0 A;  2KXP B;  3SZV A;  4PUX A;  1OSM A;  4FZM A;  2W80 C;  5ADX K;  3HOL A;  1ZHY A;  1QJ8 A;  1BXW A;  1IZN A;  1YS5 A;  3SY9 A;  3V8U A;  4XNL A;  3WI4 A;  4AYN A;  3LK2 B;  2Y0L A;  3DA4 A;  4KR8 A;  4RLC A;  1BT9 A;  3NSG A;  1QJP A;  1ZHW A;  5DL7 A;  4LSE A;  3LK4 1;  3POR A;  3PRN A;  3RBH A;  4G75 A;  4RLB A;  1PRN A;  4FMS A;  3POU A;  4FZN A;  4G76 A;  4U9C A;  4E1T A;  3QRA A;  5GV0 A;  3AA7 A;  3QRC A;  4FSO A;  3WI5 A;  1ZHX A;  2QTK A;  1G90 A;  4KR4 A;  4D64 A;  3AA0 B;  4FOZ A;  2F1T A;  2Y0H A;  4JCH A;  4O3W A;  3VE1 A;  3JTY A;  3VE2 A;  2KDY A;  3LK3 A;  2MHL A;  1IZN B;  3HWB A;  2MNH A;  3VY8 X;  1GFP A;  2XE5 A;  2YNK A;  2N2M A;  3VZU X;  2M06 A;  3HOE A;  2J4U P;  2OMF A;  1GFN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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