3W52A

Zinc-dependent bifunctional nuclease
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
263
structure length
256
Chain Sequence
WGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFRYHWSSPLHYINTPDACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLLSYKQYNLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADLYNSALEGMVDALKKNITTEWADQVKRWETCTKKTACPDIYASEGIQAACDWAYKGVTEGDTLEDEYFYSRLPIVYQRLAQGGVRLAATLNRIFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Endonuclease 2
publication title Mechanistic insights to catalysis by a zinc-dependent bi-functional nuclease from Arabidopsis thaliana
doi rcsb
source organism Arabidopsis thaliana
total genus 106
structure length 256
sequence length 263
ec nomenclature ec 3.1.30.1: Aspergillus nuclease S(1).
pdb deposition date 2013-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02265 S1-P1_nuclease S1/P1 Nuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.575.10 Mainly Alpha Orthogonal Bundle P1 Nuclease P1 Nuclease 3w52A00
1AK0A 4JDGA 2FFZA 2WXUA 1P6DA 2WY6A 4CXVA 5FBGA 1CA1A 1QMDA 5FBDA 3W52A 4CWMA 1AH7A 2FGNA 5FBAA 1OLPA 5FBCA 5FBBA 5FBFA 1QM6A 3SNGA 1P6EA 1GYGA 4CXOA 4CXPA 1KHOA 2HUCA 2WXTA 4DJ4A 1P5XA 5FB9A
chains in the Genus database with same CATH superfamily
1AK0A 4JDGA 2FFZA 2WXUA 1P6DA 2WY6A 4CXVA 5FBGA 1CA1A 1QMDA 5FBDA 3W52A 4CWMA 1AH7A 2FGNA 5FBAA 1OLPA 5FBCA 5FBBA 5FBFA 1QM6A 3SNGA 1P6EA 1GYGA 4CXOA 4CXPA 1KHOA 2HUCA 2WXTA 4DJ4A 1P5XA 5FB9A
chains in the Genus database with same CATH topology
1AK0A 4JDGA 2FFZA 2WXUA 1P6DA 2WY6A 4CXVA 5FBGA 1CA1A 1QMDA 5FBDA 3W52A 4CWMA 1AH7A 2FGNA 5FBAA 1OLPA 5FBCA 5FBBA 5FBFA 1QM6A 3SNGA 1P6EA 1GYGA 4CXOA 4CXPA 1KHOA 2HUCA 2WXTA 4DJ4A 1P5XA 5FB9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AK0 A;  4JDG A;  2FFZ A;  2WXU A;  1P6D A;  2WY6 A;  4CXV A;  5FBG A;  1CA1 A;  1QMD A;  5FBD A;  3W52 A;  4CWM A;  1AH7 A;  2FGN A;  5FBA A;  1OLP A;  5FBC A;  5FBB A;  5FBF A;  1QM6 A;  3SNG A;  1P6E A;  1GYG A;  4CXO A;  4CXP A;  1KHO A;  2HUC A;  2WXT A;  4DJ4 A;  1P5X A;  5FB9 A; 
#chains in the Genus database with same CATH topology
 1AK0 A;  4JDG A;  2FFZ A;  2WXU A;  1P6D A;  2WY6 A;  4CXV A;  5FBG A;  1CA1 A;  1QMD A;  5FBD A;  3W52 A;  4CWM A;  1AH7 A;  2FGN A;  5FBA A;  1OLP A;  5FBC A;  5FBB A;  5FBF A;  1QM6 A;  3SNG A;  1P6E A;  1GYG A;  4CXO A;  4CXP A;  1KHO A;  2HUC A;  2WXT A;  4DJ4 A;  1P5X A;  5FB9 A; 
#chains in the Genus database with same CATH homology
 1AK0 A;  4JDG A;  2FFZ A;  2WXU A;  1P6D A;  2WY6 A;  4CXV A;  5FBG A;  1CA1 A;  1QMD A;  5FBD A;  3W52 A;  4CWM A;  1AH7 A;  2FGN A;  5FBA A;  1OLP A;  5FBC A;  5FBB A;  5FBF A;  1QM6 A;  3SNG A;  1P6E A;  1GYG A;  4CXO A;  4CXP A;  1KHO A;  2HUC A;  2WXT A;  4DJ4 A;  1P5X A;  5FB9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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