3WAUA

Crystal structure of 4-o-beta-d-mannosyl-d-glucose phosphorylase mgp complexed with m1p
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
389
structure length
387
Chain Sequence
b'SLFNDKVAKLLAGHEALLMRKNEPVEEGNGVITRYRYPVLTAAHTPVFWRYDLNEETNPFLMERIGMNATLNAGAIKWDGKYLMLVRVEGADRKSFFAVAESPNGIDNFRFWEYPVTLPEDVVPATNVYDMRLTAHEDGWIYGIFCAERHDDNAPIGDLSSATATAGIARTKDLKNWERLPDLKTKSQQRNVVLHPEFVDGKYALYTRPQDGDTGSGGGIGWALIDDITHAEVGEEKIIDKRYYHTIKEVKNGEGPHPIKTPQGWLHLAHGVRNCAAGLRYVLYMYMTSLDDPTRLIASPAGYFMAPVGEERIGDVSNVLFSNGWIADDDGKVFIYYASSDTRMHVATSTIERLVDYCLHTPQDGFSSSASVEILKNLIERNLRLMK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 4-O-beta-D-mannosyl-D-glucose phosphorylase
publication title Structure of Novel Enzyme in Mannan Biodegradation Process 4-O-beta-d-Mannosyl-d-Glucose Phosphorylase MGP
pubmed doi rcsb
source organism Bacteroides fragilis
molecule tags Transferase
total genus 105
structure length 387
sequence length 389
chains with identical sequence B
ec nomenclature ec 2.4.1.281: 4-O-beta-D-mannosyl-D-glucose phosphorylase.
pdb deposition date 2013-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04041 Glyco_hydro_130 beta-1,4-mannooligosaccharide phosphorylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 3wauA00
1ST8A 3VSSA 3LV4A 4UDIA 4COTA 4KMIA 5GLNA 4AK7A 2YFSA 4UDJA 3BYLA 5AYCA 2ADEA 3LDKA 3WPUA 2XQRA 1WL7A 3WASA 1YRZA 2QQUA 1Y9MA 2X8FA 5A7VB 5GLRA 3UGGA 3ZXJA 3UGFA 4ONZA 1PT2A 4KC7A 4N2RA 4FFHA 3ZXLA 3AKHA 3LFIA 3WATA 1GYHA 3D60A 3ZXKA 5JOZA 3LF7A 4AK6A 5A8DA 3CU9A 3K1UA 5FK7A 5FMCA 5C0PA 4N1IA 3AKIA 3VT1A 3WN1A 4PVAA 3WPVA 5A8CA 3BYKA 5B6TA 5JOYA 3P2NA 3UGHA 2QQWA 3D61A 1OYGA 3LEMA 5GLQA 4FFIA 3QEFA 5FIXA 3SC7X 2EXHA 3OM7A 1W2TA 2X8SA 3KF5A 3C7HA 3AKGA 1Y9GA 1UV4A 2AEZA 2X8TA 5GLPA 3C7FA 4KCBA 5GLMA 2AEYA 2QQVA 4N2ZA 4UDGA 4FFGA 2ADDA 2EXJA 2AC1A 4U6DA 2VDTA 5GLLA 3PIGA 3QZ4A 3R4YA 4MLGA 5FKCA 3C7OA 5GLOA 2EXIA 3VSFA 3NQHA 3AKFA 4N4BA 4PVIA 3U14A 4KC8A 5ANNA 3U75A 2EXKA 3LIGA 4AK5A 3BYNA 4O8PA 3LIHA 5FKBA 5FMBA 3VSZA 4EQVA 5FMDA 3KSTA 1YI7A 1Y4WA 3PIJA 3WPYA 1VKDA 3C7EA 3QEDA 4FFFA 4QQSA 2YFTA 4UDKA 5B6SA 3C7GA 5FK8A 1GYDB 5JOXA 5AY9A 3VT0A 5AYEA 4O8NA 5AYDA 3RWKX 3WAUA 3VSRA 3VT2A 3LDRA 4UDKE 3R67A 3OM2A 3OM6A 2B4WA 3QC2A 3QEEA 4O8OA 5GLKA 3D5YA 3WPZA 5A7VA 5JOWA 2OXBA 1UYPA 3WMYA 3OM4A 5FLWA 3WN2A 3KF3A 4U6BA 3TAWA 4D47A 3R4ZA 4KCAA 1Y7BA 2YFRA 1W18A 3C2UA 4NOVA 3WMZA 3D5ZA 1YIFA 3OM5A 3WN0A 1GYEB 3BYJA
chains in the Genus database with same CATH superfamily
1ST8A 3VSSA 3LV4A 4UDIA 4COTA 4KMIA 5GLNA 4AK7A 2YFSA 4UDJA 3BYLA 1TL2A 2ADEA 5AYCA 3LDKA 3WPUA 2XQRA 1WL7A 3WASA 1YRZA 2QQUA 1Y9MA 2X8FA 5A7VB 5GLRA 3UGGA 3ZXJA 3UGFA 4ONZA 1PT2A 4KC7A 4N2RA 4FFHA 3ZXLA 3AKHA 3LFIA 3WATA 1GYHA 3D60A 3ZXKA 5JOZA 3LF7A 4AK6A 5A8DA 3CU9A 3K1UA 5FK7A 5FMCA 5C0PA 4N1IA 3AKIA 3VT1A 3WN1A 4PVAA 3WPVA 5A8CA 3BYKA 5B6TA 5JOYA 3P2NA 3UGHA 2QQWA 3D61A 1OYGA 3LEMA 5GLQA 4FFIA 3QEFA 5FIXA 3SC7X 2EXHA 3OM7A 1W2TA 2X8SA 3KF5A 3C7HA 3AKGA 1Y9GA 1UV4A 2AEZA 2X8TA 5GLPA 3C7FA 4KCBA 5GLMA 2AEYA 2QQVA 4N2ZA 4UDGA 4FFGA 2ADDA 2EXJA 2AC1A 4U6DA 2VDTA 5GLLA 3PIGA 3QZ4A 3R4YA 4MLGA 5FKCA 3C7OA 5GLOA 2EXIA 3VSFA 3NQHA 3AKFA 4N4BA 4PVIA 3U14A 4KC8A 5ANNA 3U75A 2EXKA 3LIGA 4AK5A 3BYNA 4O8PA 3LIHA 5FKBA 5FMBA 3VSZA 4EQVA 5FMDA 3KSTA 1YI7A 1Y4WA 3PIJA 3WPYA 1VKDA 3C7EA 3QEDA 4FFFA 4QQSA 2YFTA 4UDKA 5B6SA 3C7GA 5FK8A 1GYDB 5C2MA 5JOXA 5AY9A 3VT0A 5AYEA 4O8NA 5AYDA 3RWKX 3WAUA 3VSRA 3VT2A 3LDRA 4UDKE 3R67A 3OM2A 3OM6A 2B4WA 3QC2A 3QEEA 4O8OA 5GLKA 3D5YA 3WPZA 5A7VA 5JOWA 2OXBA 1UYPA 3WMYA 3OM4A 5FLWA 3WN2A 3KF3A 4U6BA 3TAWA 4D47A 3R4ZA 4KCAA 1Y7BA 2YFRA 1W18A 3C2UA 4NOVA 3WMZA 3D5ZA 1YIFA 3OM5A 3WN0A 1GYEB 3BYJA
chains in the Genus database with same CATH topology
1ST8A 3VSSA 3LV4A 4UDIA 4COTA 4KMIA 5GLNA 4AK7A 2YFSA 4UDJA 3BYLA 5AYCA 2ADEA 3LDKA 3WPUA 2XQRA 1WL7A 3WASA 1YRZA 2QQUA 1Y9MA 2X8FA 5A7VB 5GLRA 3UGGA 3ZXJA 3UGFA 4ONZA 1PT2A 4KC7A 4N2RA 4FFHA 3ZXLA 3AKHA 3LFIA 3WATA 1GYHA 3D60A 3ZXKA 5JOZA 3LF7A 4AK6A 5A8DA 3CU9A 3K1UA 5FK7A 5FMCA 5C0PA 4N1IA 3AKIA 3VT1A 3WN1A 4PVAA 3WPVA 5A8CA 3BYKA 5B6TA 5JOYA 3P2NA 3UGHA 2QQWA 3D61A 1OYGA 3LEMA 5GLQA 4FFIA 3QEFA 5FIXA 3SC7X 2EXHA 3OM7A 1W2TA 2X8SA 3KF5A 3C7HA 3AKGA 1Y9GA 1UV4A 2AEZA 2X8TA 5GLPA 3C7FA 4KCBA 5GLMA 2AEYA 2QQVA 4N2ZA 4UDGA 4FFGA 2ADDA 2EXJA 2AC1A 4U6DA 2VDTA 5GLLA 3PIGA 3QZ4A 3R4YA 4MLGA 5FKCA 3C7OA 5GLOA 2EXIA 3VSFA 3NQHA 3AKFA 4N4BA 4PVIA 3U14A 4KC8A 5ANNA 3U75A 2EXKA 3LIGA 4AK5A 3BYNA 4O8PA 3LIHA 5FKBA 5FMBA 3VSZA 4EQVA 5FMDA 3KSTA 1YI7A 1Y4WA 3PIJA 3WPYA 1VKDA 3C7EA 3QEDA 4FFFA 4QQSA 2YFTA 4UDKA 5B6SA 3C7GA 5FK8A 1GYDB 5JOXA 5AY9A 3VT0A 5AYEA 4O8NA 5AYDA 3RWKX 3WAUA 3VSRA 3VT2A 3LDRA 4UDKE 3R67A 3OM2A 3OM6A 2B4WA 3QC2A 3QEEA 4O8OA 5GLKA 3D5YA 3WPZA 5A7VA 5JOWA 2OXBA 1UYPA 3WMYA 3OM4A 5FLWA 3WN2A 3KF3A 4U6BA 3TAWA 4D47A 3R4ZA 4KCAA 1Y7BA 2YFRA 1W18A 3C2UA 4NOVA 3WMZA 3D5ZA 1YIFA 3OM5A 3WN0A 1GYEB 3BYJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ST8 A;  3VSS A;  3LV4 A;  4UDI A;  4COT A;  4KMI A;  5GLN A;  4AK7 A;  2YFS A;  4UDJ A;  3BYL A;  5AYC A;  2ADE A;  3LDK A;  3WPU A;  2XQR A;  1WL7 A;  3WAS A;  1YRZ A;  2QQU A;  1Y9M A;  2X8F A;  5A7V B;  5GLR A;  3UGG A;  3ZXJ A;  3UGF A;  4ONZ A;  1PT2 A;  4KC7 A;  4N2R A;  4FFH A;  3ZXL A;  3AKH A;  3LFI A;  3WAT A;  1GYH A;  3D60 A;  3ZXK A;  5JOZ A;  3LF7 A;  4AK6 A;  5A8D A;  3CU9 A;  3K1U A;  5FK7 A;  5FMC A;  5C0P A;  4N1I A;  3AKI A;  3VT1 A;  3WN1 A;  4PVA A;  3WPV A;  5A8C A;  3BYK A;  5B6T A;  5JOY A;  3P2N A;  3UGH A;  2QQW A;  3D61 A;  1OYG A;  3LEM A;  5GLQ A;  4FFI A;  3QEF A;  5FIX A;  3SC7 X;  2EXH A;  3OM7 A;  1W2T A;  2X8S A;  3KF5 A;  3C7H A;  3AKG A;  1Y9G A;  1UV4 A;  2AEZ A;  2X8T A;  5GLP A;  3C7F A;  4KCB A;  5GLM A;  2AEY A;  2QQV A;  4N2Z A;  4UDG A;  4FFG A;  2ADD A;  2EXJ A;  2AC1 A;  4U6D A;  2VDT A;  5GLL A;  3PIG A;  3QZ4 A;  3R4Y A;  4MLG A;  5FKC A;  3C7O A;  5GLO A;  2EXI A;  3VSF A;  3NQH A;  3AKF A;  4N4B A;  4PVI A;  3U14 A;  4KC8 A;  5ANN A;  3U75 A;  2EXK A;  3LIG A;  4AK5 A;  3BYN A;  4O8P A;  3LIH A;  5FKB A;  5FMB A;  3VSZ A;  4EQV A;  5FMD A;  3KST A;  1YI7 A;  1Y4W A;  3PIJ A;  3WPY A;  1VKD A;  3C7E A;  3QED A;  4FFF A;  4QQS A;  2YFT A;  4UDK A;  5B6S A;  3C7G A;  5FK8 A;  1GYD B;  5JOX A;  5AY9 A;  3VT0 A;  5AYE A;  4O8N A;  5AYD A;  3RWK X;  3WAU A;  3VSR A;  3VT2 A;  3LDR A;  4UDK E;  3R67 A;  3OM2 A;  3OM6 A;  2B4W A;  3QC2 A;  3QEE A;  4O8O A;  5GLK A;  3D5Y A;  3WPZ A;  5A7V A;  5JOW A;  2OXB A;  1UYP A;  3WMY A;  3OM4 A;  5FLW A;  3WN2 A;  3KF3 A;  4U6B A;  3TAW A;  4D47 A;  3R4Z A;  4KCA A;  1Y7B A;  2YFR A;  1W18 A;  3C2U A;  4NOV A;  3WMZ A;  3D5Z A;  1YIF A;  3OM5 A;  3WN0 A;  1GYE B;  3BYJ A; 
#chains in the Genus database with same CATH topology
 1ST8 A;  3VSS A;  3LV4 A;  4UDI A;  4COT A;  4KMI A;  5GLN A;  4AK7 A;  2YFS A;  4UDJ A;  3BYL A;  1TL2 A;  2ADE A;  5AYC A;  3LDK A;  3WPU A;  2XQR A;  1WL7 A;  3WAS A;  1YRZ A;  2QQU A;  1Y9M A;  2X8F A;  5A7V B;  5GLR A;  3UGG A;  3ZXJ A;  3UGF A;  4ONZ A;  1PT2 A;  4KC7 A;  4N2R A;  4FFH A;  3ZXL A;  3AKH A;  3LFI A;  3WAT A;  1GYH A;  3D60 A;  3ZXK A;  5JOZ A;  3LF7 A;  4AK6 A;  5A8D A;  3CU9 A;  3K1U A;  5FK7 A;  5FMC A;  5C0P A;  4N1I A;  3AKI A;  3VT1 A;  3WN1 A;  4PVA A;  3WPV A;  5A8C A;  3BYK A;  5B6T A;  5JOY A;  3P2N A;  3UGH A;  2QQW A;  3D61 A;  1OYG A;  3LEM A;  5GLQ A;  4FFI A;  3QEF A;  5FIX A;  3SC7 X;  2EXH A;  3OM7 A;  1W2T A;  2X8S A;  3KF5 A;  3C7H A;  3AKG A;  1Y9G A;  1UV4 A;  2AEZ A;  2X8T A;  5GLP A;  3C7F A;  4KCB A;  5GLM A;  2AEY A;  2QQV A;  4N2Z A;  4UDG A;  4FFG A;  2ADD A;  2EXJ A;  2AC1 A;  4U6D A;  2VDT A;  5GLL A;  3PIG A;  3QZ4 A;  3R4Y A;  4MLG A;  5FKC A;  3C7O A;  5GLO A;  2EXI A;  3VSF A;  3NQH A;  3AKF A;  4N4B A;  4PVI A;  3U14 A;  4KC8 A;  5ANN A;  3U75 A;  2EXK A;  3LIG A;  4AK5 A;  3BYN A;  4O8P A;  3LIH A;  5FKB A;  5FMB A;  3VSZ A;  4EQV A;  5FMD A;  3KST A;  1YI7 A;  1Y4W A;  3PIJ A;  3WPY A;  1VKD A;  3C7E A;  3QED A;  4FFF A;  4QQS A;  2YFT A;  4UDK A;  5B6S A;  3C7G A;  5FK8 A;  1GYD B;  5C2M A;  5JOX A;  5AY9 A;  3VT0 A;  5AYE A;  4O8N A;  5AYD A;  3RWK X;  3WAU A;  3VSR A;  3VT2 A;  3LDR A;  4UDK E;  3R67 A;  3OM2 A;  3OM6 A;  2B4W A;  3QC2 A;  3QEE A;  4O8O A;  5GLK A;  3D5Y A;  3WPZ A;  5A7V A;  5JOW A;  2OXB A;  1UYP A;  3WMY A;  3OM4 A;  5FLW A;  3WN2 A;  3KF3 A;  4U6B A;  3TAW A;  4D47 A;  3R4Z A;  4KCA A;  1Y7B A;  2YFR A;  1W18 A;  3C2U A;  4NOV A;  3WMZ A;  3D5Z A;  1YIF A;  3OM5 A;  3WN0 A;  1GYE B;  3BYJ A; 
#chains in the Genus database with same CATH homology
 1ST8 A;  3VSS A;  3LV4 A;  4UDI A;  4COT A;  4KMI A;  5GLN A;  4AK7 A;  2YFS A;  4UDJ A;  3BYL A;  5AYC A;  2ADE A;  3LDK A;  3WPU A;  2XQR A;  1WL7 A;  3WAS A;  1YRZ A;  2QQU A;  1Y9M A;  2X8F A;  5A7V B;  5GLR A;  3UGG A;  3ZXJ A;  3UGF A;  4ONZ A;  1PT2 A;  4KC7 A;  4N2R A;  4FFH A;  3ZXL A;  3AKH A;  3LFI A;  3WAT A;  1GYH A;  3D60 A;  3ZXK A;  5JOZ A;  3LF7 A;  4AK6 A;  5A8D A;  3CU9 A;  3K1U A;  5FK7 A;  5FMC A;  5C0P A;  4N1I A;  3AKI A;  3VT1 A;  3WN1 A;  4PVA A;  3WPV A;  5A8C A;  3BYK A;  5B6T A;  5JOY A;  3P2N A;  3UGH A;  2QQW A;  3D61 A;  1OYG A;  3LEM A;  5GLQ A;  4FFI A;  3QEF A;  5FIX A;  3SC7 X;  2EXH A;  3OM7 A;  1W2T A;  2X8S A;  3KF5 A;  3C7H A;  3AKG A;  1Y9G A;  1UV4 A;  2AEZ A;  2X8T A;  5GLP A;  3C7F A;  4KCB A;  5GLM A;  2AEY A;  2QQV A;  4N2Z A;  4UDG A;  4FFG A;  2ADD A;  2EXJ A;  2AC1 A;  4U6D A;  2VDT A;  5GLL A;  3PIG A;  3QZ4 A;  3R4Y A;  4MLG A;  5FKC A;  3C7O A;  5GLO A;  2EXI A;  3VSF A;  3NQH A;  3AKF A;  4N4B A;  4PVI A;  3U14 A;  4KC8 A;  5ANN A;  3U75 A;  2EXK A;  3LIG A;  4AK5 A;  3BYN A;  4O8P A;  3LIH A;  5FKB A;  5FMB A;  3VSZ A;  4EQV A;  5FMD A;  3KST A;  1YI7 A;  1Y4W A;  3PIJ A;  3WPY A;  1VKD A;  3C7E A;  3QED A;  4FFF A;  4QQS A;  2YFT A;  4UDK A;  5B6S A;  3C7G A;  5FK8 A;  1GYD B;  5JOX A;  5AY9 A;  3VT0 A;  5AYE A;  4O8N A;  5AYD A;  3RWK X;  3WAU A;  3VSR A;  3VT2 A;  3LDR A;  4UDK E;  3R67 A;  3OM2 A;  3OM6 A;  2B4W A;  3QC2 A;  3QEE A;  4O8O A;  5GLK A;  3D5Y A;  3WPZ A;  5A7V A;  5JOW A;  2OXB A;  1UYP A;  3WMY A;  3OM4 A;  5FLW A;  3WN2 A;  3KF3 A;  4U6B A;  3TAW A;  4D47 A;  3R4Z A;  4KCA A;  1Y7B A;  2YFR A;  1W18 A;  3C2U A;  4NOV A;  3WMZ A;  3D5Z A;  1YIF A;  3OM5 A;  3WN0 A;  1GYE B;  3BYJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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