3WBMA

Crystal structure of protein-rna complex
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
93
structure length
86
Chain Sequence
TPTPSNVVLIGKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVSRVSTIEIAIRKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein/rna
molecule keywords DNA/RNA-binding protein Alba 1
publication title Biochemical and structural insights into RNA binding by Ssh10b, a member of the highly conserved Sac10b family in Archaea
doi rcsb
source organism Sulfolobus shibatae
total genus 24
structure length 86
sequence length 93
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01918 Alba Alba
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.20 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 Alba-like domain 3wbmA00
1UDVA 1H0XA 2Z7CA 2EH1A 2Q3VA 1VM0A 3IABA 1Y9XA 3TOEA 3WBMA 1H0YA 2EK0A 3IABB 4Z9EA 1NH9A 1NFJA 2BKYX 2H9UA 3U6YA 1NFHA 2A2YA
chains in the Genus database with same CATH superfamily
3HZ7A 2Q3VA 1JDQA 3IALA 1Y9XA 1H0YA 4YDQA 1NJ1A 4HD0A 4Z9EA 2LXRA 4Q15A 1NH9A 1JO0A 3TTCA 2L8YA 3TSUA 3TTDA 1NFHA 2A2YA 1TIGA 3DSCA 3TTFA 1UDVA 3LVKB 1VM0A 3ZIGA 4WI1A 3WBMA 3VTIA 3TSQA 1S8EA 4FBQA 2IFEA 4TWAA 4HVCA 4FBWA 1PAVA 1RQ8A 3DSDA 4OLFA 2GTCA 4NZTM 3VTHA 4EO0A 1LN4A 2Z7CA 3TSPA 1H4SA 3IABA 3TOEA 3ZIIA 4K88A 4NZRM 2Y1BA 2CRQA 2EK0A 2M71A 1VR4A 1H4TA 1NJ8A 1NFJA 1H4QA 2BKYX 2H9UA 3U6YA 4K86A 3LVJC 1HC7A 1H0XA 1XEZA 4FCXA 1JE3A 2EH1A 4K87A 1DCJA 4FBKA 1NJ5A 1Y2IA 3QKBA 4YKEA 4HVZA 2P9BA 3IABB 3ZIEA 3T1IA 3ZIHA 1NJ6A 2LN3A 1NJ2A 4NCXA 3P04A 1II7A
chains in the Genus database with same CATH topology
1UDVA 1H0XA 2Z7CA 2EH1A 2Q3VA 1VM0A 3IABA 1Y9XA 3TOEA 3WBMA 1H0YA 2EK0A 3IABB 4Z9EA 1NH9A 1NFJA 2BKYX 2H9UA 3U6YA 1NFHA 2A2YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UDV A;  1H0X A;  2Z7C A;  2EH1 A;  2Q3V A;  1VM0 A;  3IAB A;  1Y9X A;  3TOE A;  3WBM A;  1H0Y A;  2EK0 A;  3IAB B;  4Z9E A;  1NH9 A;  1NFJ A;  2BKY X;  2H9U A;  3U6Y A;  1NFH A;  2A2Y A; 
#chains in the Genus database with same CATH topology
 3HZ7 A;  2Q3V A;  1JDQ A;  3IAL A;  1Y9X A;  1H0Y A;  4YDQ A;  1NJ1 A;  4HD0 A;  4Z9E A;  2LXR A;  4Q15 A;  1NH9 A;  1JO0 A;  3TTC A;  2L8Y A;  3TSU A;  3TTD A;  1NFH A;  2A2Y A;  1TIG A;  3DSC A;  3TTF A;  1UDV A;  3LVK B;  1VM0 A;  3ZIG A;  4WI1 A;  3WBM A;  3VTI A;  3TSQ A;  1S8E A;  4FBQ A;  2IFE A;  4TWA A;  4HVC A;  4FBW A;  1PAV A;  1RQ8 A;  3DSD A;  4OLF A;  2GTC A;  4NZT M;  3VTH A;  4EO0 A;  1LN4 A;  2Z7C A;  3TSP A;  1H4S A;  3IAB A;  3TOE A;  3ZII A;  4K88 A;  4NZR M;  2Y1B A;  2CRQ A;  2EK0 A;  2M71 A;  1VR4 A;  1H4T A;  1NJ8 A;  1NFJ A;  1H4Q A;  2BKY X;  2H9U A;  3U6Y A;  4K86 A;  3LVJ C;  1HC7 A;  1H0X A;  1XEZ A;  4FCX A;  1JE3 A;  2EH1 A;  4K87 A;  1DCJ A;  4FBK A;  1NJ5 A;  1Y2I A;  3QKB A;  4YKE A;  4HVZ A;  2P9B A;  3IAB B;  3ZIE A;  3T1I A;  3ZIH A;  1NJ6 A;  2LN3 A;  1NJ2 A;  4NCX A;  3P04 A;  1II7 A; 
#chains in the Genus database with same CATH homology
 1UDV A;  1H0X A;  2Z7C A;  2EH1 A;  2Q3V A;  1VM0 A;  3IAB A;  1Y9X A;  3TOE A;  3WBM A;  1H0Y A;  2EK0 A;  3IAB B;  4Z9E A;  1NH9 A;  1NFJ A;  2BKY X;  2H9U A;  3U6Y A;  1NFH A;  2A2Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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