3WFDB

Reduced and acetaldoxime-bound cytochrome c-dependent nitric oxide reductase (cnor) from pseudomonas aeruginosa in complex with antibody fragment
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
449
structure length
449
Chain Sequence
FASQAVAKPYFVFALILFVGQILFGLIMGLQYVVGDFLFPAIPFNVARMVHTNLLIVWLLFGFMGAAYYLVPEESDCELYSPKLAWILFWVFAAAGVLTILGYLLVPYAGLARLTGNELWPTMGREFLEQPTISKAGIVIVALGFLFNVGMTVLRGRKTAISMVLMTGLIGLALLFLFSFYNPENLTRDKFYWWWVVHLWVEGVWELIMGAILAFVLVKITGVDREVIEKWLYVIIAMALISGIIGTGHHYFWIGVPGYWLWLGSVFSALEPLPFFAMVLFAFNTINRRRRDYPNRAVALWAMGTTVMAFLGAGVWGFMHTLAPVNYYTHGTQLTAAHGHMAFYGAYAMIVMTIISYAMPRLRGIGEAMDNRSQVLEMWGFWLMTVAMVFITLFLSAAGVLQVWLQRMPADGAAMTFMATQDQLAIFYWLREGAGVVFLIGLVAYLLSF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system/oxidoreductase
molecule keywords antibody fab fragment light chain
publication title Structures of reduced and ligand-bound nitric oxide reductase provide insights into functional differences in respiratory enzymes
pubmed doi rcsb
total genus 188
structure length 449
sequence length 449
ec nomenclature ec 1.7.2.5: Nitric-oxide reductase (cytochrome c).
pdb deposition date 2013-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00115 COX1 Cytochrome C and Quinol oxidase polypeptide I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.210.10 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome c oxidase-like, subunit I domain 3wfdB00
4FA7A 4G7SA 3AG1A 3WFEB 1FFTA 4N4YA 3AG3A 1OCOA 3QJQA 5B1AA 3ABKA 2QPEA 3S8GA 4G7QA 2QPDA 5IY5A 3QJUA 3QJSA 1EHKA 4GP8A 4XYDA 2EIJA 4GP4A 4G72A 1V55A 3QJRA 2EILA 4G70A 3QJTA 3AG2A 3ABLA 3S3CA 3EHBA 1AR1A 2DYRA 1QLEA 5DJQA 1XMEA 2Y69A 2EIMA 3AYGA 5B3SA 3WFBB 4G7RA 3EH3A 3WG7A 3EH4A 3ABMA 3X2QA 3ASNA 3AYFA 3S8FA 3S3BA 2DYSA 2EINA 3FYIA 3MK7A 2OCCA 3ASOA 4G71A 1M57A 3O0RB 5B1BA 3EH5A 1V54A 1OCZA 3OM3A 3OMAA 3BVDA 4GP5A 3FYEA 2YEVA 3WFDB 1OCRA 1OCCA 3OMNA 2GSMA 4FAAA 1M56A 3WFCB 3HB3A 3S3DA 3AG4A 3DTUA 3QJVA 2EIKA 3OMIA 2ZXWA
chains in the Genus database with same CATH superfamily
4FA7A 4G7SA 3AG1A 3WFEB 1FFTA 4N4YA 3AG3A 1OCOA 3QJQA 5B1AA 3ABKA 2QPEA 3S8GA 4G7QA 2QPDA 5IY5A 3QJUA 3QJSA 1EHKA 4GP8A 4XYDA 2EIJA 4GP4A 4G72A 1V55A 3QJRA 2EILA 4G70A 3QJTA 3AG2A 3ABLA 3S3CA 3EHBA 1AR1A 2DYRA 1QLEA 5DJQA 1XMEA 2Y69A 2EIMA 3AYGA 5B3SA 3WFBB 4G7RA 3EH3A 3WG7A 3EH4A 3ABMA 3X2QA 3ASNA 3AYFA 3S8FA 3S3BA 2DYSA 2EINA 3FYIA 3MK7A 2OCCA 3ASOA 4G71A 1M57A 3O0RB 5B1BA 3EH5A 1V54A 1OCZA 3OM3A 3OMAA 3BVDA 4GP5A 3FYEA 2YEVA 3WFDB 1OCRA 1OCCA 3OMNA 2GSMA 4FAAA 1M56A 3WFCB 3HB3A 3S3DA 3AG4A 3DTUA 3QJVA 2EIKA 3OMIA 2ZXWA
chains in the Genus database with same CATH topology
4FA7A 4G7SA 3AG1A 3WFEB 1FFTA 4N4YA 3AG3A 1OCOA 3QJQA 5B1AA 3ABKA 2QPEA 3S8GA 4G7QA 2QPDA 5IY5A 3QJUA 3QJSA 1EHKA 4GP8A 4XYDA 2EIJA 4GP4A 4G72A 1V55A 3QJRA 2EILA 4G70A 3QJTA 3AG2A 3ABLA 3S3CA 3EHBA 1AR1A 2DYRA 1QLEA 5DJQA 1XMEA 2Y69A 2EIMA 3AYGA 5B3SA 3WFBB 4G7RA 3EH3A 3WG7A 3EH4A 3ABMA 3X2QA 3ASNA 3AYFA 3S8FA 3S3BA 2DYSA 2EINA 3FYIA 3MK7A 2OCCA 3ASOA 4G71A 1M57A 3O0RB 5B1BA 3EH5A 1V54A 1OCZA 3OM3A 3OMAA 3BVDA 4GP5A 3FYEA 2YEVA 3WFDB 1OCRA 1OCCA 3OMNA 2GSMA 4FAAA 1M56A 3WFCB 3HB3A 3S3DA 3AG4A 3DTUA 3QJVA 2EIKA 3OMIA 2ZXWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FA7 A;  4G7S A;  3AG1 A;  3WFE B;  1FFT A;  4N4Y A;  3AG3 A;  1OCO A;  3QJQ A;  5B1A A;  3ABK A;  2QPE A;  3S8G A;  4G7Q A;  2QPD A;  5IY5 A;  3QJU A;  3QJS A;  1EHK A;  4GP8 A;  4XYD A;  2EIJ A;  4GP4 A;  4G72 A;  1V55 A;  3QJR A;  2EIL A;  4G70 A;  3QJT A;  3AG2 A;  3ABL A;  3S3C A;  3EHB A;  1AR1 A;  2DYR A;  1QLE A;  5DJQ A;  1XME A;  2Y69 A;  2EIM A;  3AYG A;  5B3S A;  3WFB B;  4G7R A;  3EH3 A;  3WG7 A;  3EH4 A;  3ABM A;  3X2Q A;  3ASN A;  3AYF A;  3S8F A;  3S3B A;  2DYS A;  2EIN A;  3FYI A;  3MK7 A;  2OCC A;  3ASO A;  4G71 A;  1M57 A;  3O0R B;  5B1B A;  3EH5 A;  1V54 A;  1OCZ A;  3OM3 A;  3OMA A;  3BVD A;  4GP5 A;  3FYE A;  2YEV A;  3WFD B;  1OCR A;  1OCC A;  3OMN A;  2GSM A;  4FAA A;  1M56 A;  3WFC B;  3HB3 A;  3S3D A;  3AG4 A;  3DTU A;  3QJV A;  2EIK A;  3OMI A;  2ZXW A; 
#chains in the Genus database with same CATH topology
 4FA7 A;  4G7S A;  3AG1 A;  3WFE B;  1FFT A;  4N4Y A;  3AG3 A;  1OCO A;  3QJQ A;  5B1A A;  3ABK A;  2QPE A;  3S8G A;  4G7Q A;  2QPD A;  5IY5 A;  3QJU A;  3QJS A;  1EHK A;  4GP8 A;  4XYD A;  2EIJ A;  4GP4 A;  4G72 A;  1V55 A;  3QJR A;  2EIL A;  4G70 A;  3QJT A;  3AG2 A;  3ABL A;  3S3C A;  3EHB A;  1AR1 A;  2DYR A;  1QLE A;  5DJQ A;  1XME A;  2Y69 A;  2EIM A;  3AYG A;  5B3S A;  3WFB B;  4G7R A;  3EH3 A;  3WG7 A;  3EH4 A;  3ABM A;  3X2Q A;  3ASN A;  3AYF A;  3S8F A;  3S3B A;  2DYS A;  2EIN A;  3FYI A;  3MK7 A;  2OCC A;  3ASO A;  4G71 A;  1M57 A;  3O0R B;  5B1B A;  3EH5 A;  1V54 A;  1OCZ A;  3OM3 A;  3OMA A;  3BVD A;  4GP5 A;  3FYE A;  2YEV A;  3WFD B;  1OCR A;  1OCC A;  3OMN A;  2GSM A;  4FAA A;  1M56 A;  3WFC B;  3HB3 A;  3S3D A;  3AG4 A;  3DTU A;  3QJV A;  2EIK A;  3OMI A;  2ZXW A; 
#chains in the Genus database with same CATH homology
 4FA7 A;  4G7S A;  3AG1 A;  3WFE B;  1FFT A;  4N4Y A;  3AG3 A;  1OCO A;  3QJQ A;  5B1A A;  3ABK A;  2QPE A;  3S8G A;  4G7Q A;  2QPD A;  5IY5 A;  3QJU A;  3QJS A;  1EHK A;  4GP8 A;  4XYD A;  2EIJ A;  4GP4 A;  4G72 A;  1V55 A;  3QJR A;  2EIL A;  4G70 A;  3QJT A;  3AG2 A;  3ABL A;  3S3C A;  3EHB A;  1AR1 A;  2DYR A;  1QLE A;  5DJQ A;  1XME A;  2Y69 A;  2EIM A;  3AYG A;  5B3S A;  3WFB B;  4G7R A;  3EH3 A;  3WG7 A;  3EH4 A;  3ABM A;  3X2Q A;  3ASN A;  3AYF A;  3S8F A;  3S3B A;  2DYS A;  2EIN A;  3FYI A;  3MK7 A;  2OCC A;  3ASO A;  4G71 A;  1M57 A;  3O0R B;  5B1B A;  3EH5 A;  1V54 A;  1OCZ A;  3OM3 A;  3OMA A;  3BVD A;  4GP5 A;  3FYE A;  2YEV A;  3WFD B;  1OCR A;  1OCC A;  3OMN A;  2GSM A;  4FAA A;  1M56 A;  3WFC B;  3HB3 A;  3S3D A;  3AG4 A;  3DTU A;  3QJV A;  2EIK A;  3OMI A;  2ZXW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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