3WHQA

Crystal structure of gamma-glutamyltranspeptidase from bacillus subtilis (crystal soaked for 0 min. in acivicin soln. )
Total Genus 104
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
360
structure length
360
Chain Sequence
EYKQVDVGKDGMVATAHPLASEIGADVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGFMMVYDGKTKDTTIIDSRERAPAGATPDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEEALDKWGTRSMKQLITPSIKLAEKGFPIDSVLAEAISDYQEKLSRTAAKDVFLPNGEPLKEGDTLIQKDLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEPIWGDYQGYQIATTPPPSSGGIFLLQMLKILDHFNLSQYDVRSWEKYQLLAETMHLSYADRASYAGDPEFVNVPLKGLLHPDYIKERQQLINLDQVNKKPKAGDPWKYQEGSANYKQVEQPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase, transferase
molecule keywords Gamma-glutamyltranspeptidase large chain
publication title Structure of Bacillus subtilis gamma-glutamyl-transpeptidase in complex with acivicin: diversity of the binding mode of a classical and electrophilic active-site-directed glutamate analogue
doi rcsb
source organism Bacillus subtilis
total genus 104
structure length 360
sequence length 360
ec nomenclature ec 2.3.2.2: Gamma-glutamyltransferase.
pdb deposition date 2013-08-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.130 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 3whqA02
2QMCA 2DBUA 3WHSA 4ZBKA 3WHQA 2QM6A 4OTUA 4Z9OA 4ZCGA 3A75A 2NQOA 2V36A 3FNMA 4GDXA 4ZC6A 2DBWA 2DG5A 2Z8JA 4GG2A 2E0YA 2Z8KA 4OTTA 2E0XA 2Z8IA 2DBXA 5B5TA 5BPKA 3WHRA
chains in the Genus database with same CATH superfamily
4LUFA 2EFHA 2XW1A 4K2CA 2OT3A 2AGHB 2I30A 3G9KD 3KIKA 3LU8A 3LU7A 2DBUA 1MIWA 1JNBA 1E78A 3GA9L 2YDFA 4LUHA 4N0UD 2XW0A 3KJLA 4E99A 1NT2B 4ZBKA 3W1SA 3WHQA 1BKEA 2QM6A 4M70B 4OTUA 2LXTA 4FK5B 1H9ZA 4GDKB 2NQOA 3ECPA 3H37A 2V36A 4NAWB 2BXHA 3LU6A 1KDXA 2ROHA 4GDXA 2VUFA 4ZC6A 5HOZA 2BXDA 1E7EA 2Z8JA 4FJCB 4N3ZA 2BXKA 2E0YA 1KXPD 5DQFA 2E0XA 2DBXA 2XVWA 5IIXA 1SB0A 1HK3A 4K71A 3GQUA 3VQIA 1E7GA 3WHRA 2XMOA 4L9KA 1MIYA 2AJEA 5FUOA 1HK4A 5IIUA 4WA6B 5IJ5A 1KW2A 4ZBRA 2CKXA 2LQHA 4C31B 2EFEA 3GQXA 3FWBC 2I2ZA 5ID7A 4F5UA 5GIPA 3V09A 1J7EA 4W4UB 2K0NA 2BXOA 1IJGA 4S1YA 4G03A 1E7IA 4N0FD 2OZBB 2EFDA 3SQJA 2LQIA 4L9QA 4G04A 1BJ5A 4LA0A 4MBEC 1MA9A 3H3AA 4OR0A 2DG5A 2BXBA 4I9OA 2BX8A 2NNWA 2BXIA 2XVQA 3NVIA 3CX9A 2QHBA 2JUHA 5BPKA 2BXFA 1HK5A 1MM8A 1HK2A 5D7GA 3NMUA 5ID9A 2EFCA 2BXMA 2QMCA 2VUEA 3SIVB 1E7HA 4G01A 3UIVA 4LB9A 4J2VA 3A73A 4TQ0A 5DBYA 4IW2A 2BXQA 1MUHA 5IIHA 4ZCGA 3V03A 4BKEA 3MHHB 4OT2A 4EMXA 1FOUA 5IFOA 4HGMB 3ICXA 3V08A 4DHXB 4F5SA 2BXGA 3FNMA 4JK4A 1E7AA 2BXLA 3B9LA 3NVMA 4D7XA 3NVKA 1J78A 1GNJA 1E7CA 2DBWA 2BXCA 2DYMA 4GG2A 2BXPA 4OTTA 1E7FA 4Z69A 2XVVA 4GDLB 5IJFA 5GHKA 1TF0A 2VDBA 1UORA 5GIOA 2BXNA 4DM0A 4F5TA 4F5VA 3JQZA 4HGKA 3BPJA 1HA2A 3MHSB 4LB2A 1VFIA 3M99C 3SIUB 1AO6A 2XVUA 3WHSA 1BM0A 1TXUA 3B9MA 3JRYA 4Z9OA 1LNSA 2DYOA 1O9XA 4TQ1A 3A75A 2LOQA 4BY9C 1MIVA 5GINA 2BXAA 2BXEA 4IW1A 4PO0A 2LXSA 1VZSA 3PLAA 1MUSA 1GNIA 1H5WA 2KWFA 2Z8KA 3FWCC 4ZBQA 4ZUXV 2GUTA 5IJEA 2XSIA 2Z8IA 4L8UA 4FIPB 5B5TA 1HK1A 1E7BA 2KBZA 3TDLA 1N5UA 1LOTA
chains in the Genus database with same CATH topology
4LUFA 2EFHA 2XW1A 4K2CA 2OT3A 2I30A 3G9KD 3KIKA 3LU8A 3LU7A 2DBUA 1MIWA 1JNBA 1E78A 3GA9L 2YDFA 4LUHA 4N0UD 2XW0A 3KJLA 4E99A 1NT2B 4ZBKA 3W1SA 3WHQA 1BKEA 2QM6A 4M70B 4OTUA 4FK5B 1H9ZA 4GDKB 2NQOA 3H37A 2V36A 4NAWB 2BXHA 3LU6A 2ROHA 4GDXA 2VUFA 4ZC6A 5HOZA 2BXDA 1E7EA 2Z8JA 4FJCB 4N3ZA 2BXKA 2E0YA 1KXPD 5DQFA 2E0XA 2DBXA 2XVWA 5IIXA 1HK3A 4K71A 3GQUA 3VQIA 1E7GA 3WHRA 2XMOA 4L9KA 1MIYA 2AJEA 5FUOA 1HK4A 5IIUA 4WA6B 5IJ5A 1KW2A 4ZBRA 2CKXA 4C31B 2EFEA 3GQXA 3FWBC 2I2ZA 5ID7A 4F5UA 5GIPA 3V09A 1J7EA 4W4UB 2BXOA 1IJGA 4S1YA 4G03A 1E7IA 4N0FD 2OZBB 2EFDA 3SQJA 4L9QA 4G04A 1BJ5A 4LA0A 4MBEC 1MA9A 3H3AA 4OR0A 2DG5A 2BXBA 2BX8A 2NNWA 2BXIA 2XVQA 3NVIA 3CX9A 2QHBA 2JUHA 5BPKA 2BXFA 1HK5A 1HK2A 5D7GA 3NMUA 5ID9A 2EFCA 2BXMA 2QMCA 2VUEA 3SIVB 1E7HA 4G01A 3UIVA 4LB9A 4J2VA 3A73A 4TQ0A 5DBYA 4IW2A 2BXQA 5IIHA 4ZCGA 3V03A 4BKEA 3MHHB 4OT2A 4EMXA 1FOUA 5IFOA 4HGMB 3ICXA 3V08A 4DHXB 4F5SA 2BXGA 3FNMA 4JK4A 1E7AA 2BXLA 3B9LA 3NVMA 3NVKA 1J78A 1GNJA 1E7CA 2DBWA 2BXCA 2DYMA 4GG2A 2BXPA 4OTTA 1E7FA 4Z69A 2XVVA 4GDLB 5IJFA 5GHKA 1TF0A 2VDBA 1UORA 5GIOA 2BXNA 4F5TA 4F5VA 3JQZA 4HGKA 1HA2A 3MHSB 4LB2A 1VFIA 3M99C 3SIUB 1AO6A 2XVUA 3WHSA 1BM0A 1TXUA 3B9MA 3JRYA 4Z9OA 1LNSA 2DYOA 1O9XA 4TQ1A 3A75A 2LOQA 4BY9C 1MIVA 5GINA 2BXAA 2BXEA 4IW1A 4PO0A 1VZSA 3PLAA 1GNIA 1H5WA 4ZBQA 2Z8KA 3FWCC 4ZUXV 5IJEA 2XSIA 2Z8IA 4L8UA 4FIPB 5B5TA 1HK1A 1E7BA 2KBZA 3TDLA 1N5UA 1LOTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QMC A;  2DBU A;  3WHS A;  4ZBK A;  3WHQ A;  2QM6 A;  4OTU A;  4Z9O A;  4ZCG A;  3A75 A;  2NQO A;  2V36 A;  3FNM A;  4GDX A;  4ZC6 A;  2DBW A;  2DG5 A;  2Z8J A;  4GG2 A;  2E0Y A;  2Z8K A;  4OTT A;  2E0X A;  2Z8I A;  2DBX A;  5B5T A;  5BPK A;  3WHR A; 
#chains in the Genus database with same CATH topology
 4LUF A;  2EFH A;  2XW1 A;  4K2C A;  2OT3 A;  2AGH B;  2I30 A;  3G9K D;  3KIK A;  3LU8 A;  3LU7 A;  2DBU A;  1MIW A;  1JNB A;  1E78 A;  3GA9 L;  2YDF A;  4LUH A;  4N0U D;  2XW0 A;  3KJL A;  4E99 A;  1NT2 B;  4ZBK A;  3W1S A;  3WHQ A;  1BKE A;  2QM6 A;  4M70 B;  4OTU A;  2LXT A;  4FK5 B;  1H9Z A;  4GDK B;  2NQO A;  3ECP A;  3H37 A;  2V36 A;  4NAW B;  2BXH A;  3LU6 A;  1KDX A;  2ROH A;  4GDX A;  2VUF A;  4ZC6 A;  5HOZ A;  2BXD A;  1E7E A;  2Z8J A;  4FJC B;  4N3Z A;  2BXK A;  2E0Y A;  1KXP D;  5DQF A;  2E0X A;  2DBX A;  2XVW A;  5IIX A;  1SB0 A;  1HK3 A;  4K71 A;  3GQU A;  3VQI A;  1E7G A;  3WHR A;  2XMO A;  4L9K A;  1MIY A;  2AJE A;  5FUO A;  1HK4 A;  5IIU A;  4WA6 B;  5IJ5 A;  1KW2 A;  4ZBR A;  2CKX A;  2LQH A;  4C31 B;  2EFE A;  3GQX A;  3FWB C;  2I2Z A;  5ID7 A;  4F5U A;  5GIP A;  3V09 A;  1J7E A;  4W4U B;  2K0N A;  2BXO A;  1IJG A;  4S1Y A;  4G03 A;  1E7I A;  4N0F D;  2OZB B;  2EFD A;  3SQJ A;  2LQI A;  4L9Q A;  4G04 A;  1BJ5 A;  4LA0 A;  4MBE C;  1MA9 A;  3H3A A;  4OR0 A;  2DG5 A;  2BXB A;  4I9O A;  2BX8 A;  2NNW A;  2BXI A;  2XVQ A;  3NVI A;  3CX9 A;  2QHB A;  2JUH A;  5BPK A;  2BXF A;  1HK5 A;  1MM8 A;  1HK2 A;  5D7G A;  3NMU A;  5ID9 A;  2EFC A;  2BXM A;  2QMC A;  2VUE A;  3SIV B;  1E7H A;  4G01 A;  3UIV A;  4LB9 A;  4J2V A;  3A73 A;  4TQ0 A;  5DBY A;  4IW2 A;  2BXQ A;  1MUH A;  5IIH A;  4ZCG A;  3V03 A;  4BKE A;  3MHH B;  4OT2 A;  4EMX A;  1FOU A;  5IFO A;  4HGM B;  3ICX A;  3V08 A;  4DHX B;  4F5S A;  2BXG A;  3FNM A;  4JK4 A;  1E7A A;  2BXL A;  3B9L A;  3NVM A;  4D7X A;  3NVK A;  1J78 A;  1GNJ A;  1E7C A;  2DBW A;  2BXC A;  2DYM A;  4GG2 A;  2BXP A;  4OTT A;  1E7F A;  4Z69 A;  2XVV A;  4GDL B;  5IJF A;  5GHK A;  1TF0 A;  2VDB A;  1UOR A;  5GIO A;  2BXN A;  4DM0 A;  4F5T A;  4F5V A;  3JQZ A;  4HGK A;  3BPJ A;  1HA2 A;  3MHS B;  4LB2 A;  1VFI A;  3M99 C;  3SIU B;  1AO6 A;  2XVU A;  3WHS A;  1BM0 A;  1TXU A;  3B9M A;  3JRY A;  4Z9O A;  1LNS A;  2DYO A;  1O9X A;  4TQ1 A;  3A75 A;  2LOQ A;  4BY9 C;  1MIV A;  5GIN A;  2BXA A;  2BXE A;  4IW1 A;  4PO0 A;  2LXS A;  1VZS A;  3PLA A;  1MUS A;  1GNI A;  1H5W A;  2KWF A;  2Z8K A;  3FWC C;  4ZBQ A;  4ZUX V;  2GUT A;  5IJE A;  2XSI A;  2Z8I A;  4L8U A;  4FIP B;  5B5T A;  1HK1 A;  1E7B A;  2KBZ A;  3TDL A;  1N5U A;  1LOT A; 
#chains in the Genus database with same CATH homology
 4LUF A;  2EFH A;  2XW1 A;  4K2C A;  2OT3 A;  2I30 A;  3G9K D;  3KIK A;  3LU8 A;  3LU7 A;  2DBU A;  1MIW A;  1JNB A;  1E78 A;  3GA9 L;  2YDF A;  4LUH A;  4N0U D;  2XW0 A;  3KJL A;  4E99 A;  1NT2 B;  4ZBK A;  3W1S A;  3WHQ A;  1BKE A;  2QM6 A;  4M70 B;  4OTU A;  4FK5 B;  1H9Z A;  4GDK B;  2NQO A;  3H37 A;  2V36 A;  4NAW B;  2BXH A;  3LU6 A;  2ROH A;  4GDX A;  2VUF A;  4ZC6 A;  5HOZ A;  2BXD A;  1E7E A;  2Z8J A;  4FJC B;  4N3Z A;  2BXK A;  2E0Y A;  1KXP D;  5DQF A;  2E0X A;  2DBX A;  2XVW A;  5IIX A;  1HK3 A;  4K71 A;  3GQU A;  3VQI A;  1E7G A;  3WHR A;  2XMO A;  4L9K A;  1MIY A;  2AJE A;  5FUO A;  1HK4 A;  5IIU A;  4WA6 B;  5IJ5 A;  1KW2 A;  4ZBR A;  2CKX A;  4C31 B;  2EFE A;  3GQX A;  3FWB C;  2I2Z A;  5ID7 A;  4F5U A;  5GIP A;  3V09 A;  1J7E A;  4W4U B;  2BXO A;  1IJG A;  4S1Y A;  4G03 A;  1E7I A;  4N0F D;  2OZB B;  2EFD A;  3SQJ A;  4L9Q A;  4G04 A;  1BJ5 A;  4LA0 A;  4MBE C;  1MA9 A;  3H3A A;  4OR0 A;  2DG5 A;  2BXB A;  2BX8 A;  2NNW A;  2BXI A;  2XVQ A;  3NVI A;  3CX9 A;  2QHB A;  2JUH A;  5BPK A;  2BXF A;  1HK5 A;  1HK2 A;  5D7G A;  3NMU A;  5ID9 A;  2EFC A;  2BXM A;  2QMC A;  2VUE A;  3SIV B;  1E7H A;  4G01 A;  3UIV A;  4LB9 A;  4J2V A;  3A73 A;  4TQ0 A;  5DBY A;  4IW2 A;  2BXQ A;  5IIH A;  4ZCG A;  3V03 A;  4BKE A;  3MHH B;  4OT2 A;  4EMX A;  1FOU A;  5IFO A;  4HGM B;  3ICX A;  3V08 A;  4DHX B;  4F5S A;  2BXG A;  3FNM A;  4JK4 A;  1E7A A;  2BXL A;  3B9L A;  3NVM A;  3NVK A;  1J78 A;  1GNJ A;  1E7C A;  2DBW A;  2BXC A;  2DYM A;  4GG2 A;  2BXP A;  4OTT A;  1E7F A;  4Z69 A;  2XVV A;  4GDL B;  5IJF A;  5GHK A;  1TF0 A;  2VDB A;  1UOR A;  5GIO A;  2BXN A;  4F5T A;  4F5V A;  3JQZ A;  4HGK A;  1HA2 A;  3MHS B;  4LB2 A;  1VFI A;  3M99 C;  3SIU B;  1AO6 A;  2XVU A;  3WHS A;  1BM0 A;  1TXU A;  3B9M A;  3JRY A;  4Z9O A;  1LNS A;  2DYO A;  1O9X A;  4TQ1 A;  3A75 A;  2LOQ A;  4BY9 C;  1MIV A;  5GIN A;  2BXA A;  2BXE A;  4IW1 A;  4PO0 A;  1VZS A;  3PLA A;  1GNI A;  1H5W A;  4ZBQ A;  2Z8K A;  3FWC C;  4ZUX V;  5IJE A;  2XSI A;  2Z8I A;  4L8U A;  4FIP B;  5B5T A;  1HK1 A;  1E7B A;  2KBZ A;  3TDL A;  1N5U A;  1LOT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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