3WI5A

Crystal structure of the loop 7 mutant porb from neisseria meningitidis serogroup b
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
312
structure length
312
Chain Sequence
DVTLYGTIKAGVETSRSVFHQNGQVTEVTTATGIVDLGSKIGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWGNRQSFIGLKGGFGKLRVGRLNSVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQEGLNIEKYQIHRLVSGYDNDALYASVAVQQQDAKLTDASNSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGLVAKADIGNRYDQVVVGAEYDFSKRTSALVSAGWLQEGKGENKFVATAGGVGLRHKF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Neisseria meningitidis
publication title Crystallographic analysis of Neisseria meningitidis PorB extracellular loops potentially implicated in TLR2 recognition.
pubmed doi rcsb
molecule keywords Major outer membrane protein P.IB
total genus 77
structure length 312
sequence length 312
ec nomenclature
pdb deposition date 2013-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3wi5A00
2Y0KA 3SYSA 1GFOA 1PRNA 1BT9A 3SZVA 3SZDA 1BH3A 4LSFA 2FGQX 4JFBA 4FT6A 3VZWX 2XE2A 3JTYA 5FVNA 4KRAA 3T0SA 1HXTA 4D65A 3O0EA 3VY8X 4D64A 2PORA 2J1NA 5JDPA 2ZFGA 4FRTA 4GCQA 2ODJA 1GFQA 4BUMX 3PORA 2FGRA 1OPFA 3PRNA 5DL8A 3POUA 1OSMA 3VY9X 3FYXA 2K4TA 5PRNA 5DL5A 1H6S1 5DL7A 3UPGA 3VZTX 4FSPA 3HWBA 1GFMA 4C69X 4KR4A 3SYBA 3K19A 3UU2A 2Y0HA 2ZLDA 4LSHA 4FSOA 4GCSA 4D5UA 1E54A 4KR8A 3SY9A 2PRNA 3POQA 8PRNA 4LSIA 4AUIA 2J4UP 2QTKA 3WI4A 3VZUX 1GFNA 2Y0LA 3HW9A 2XG6A 1HXXA 7PRNA 3EMNX 2XE1A 4GCPA 1GFPA 2OMFA 6PRNA 2O4VA 4RJWA 2XE3A 3A2SX 4FOZA 4LSEA 4RJXA 1MPFA 3T20A 5DL6A 3T24A 3NSGA 1HXUA 2XE5A 1PHOA 3SY7A 3WI5A 2Y2XA 4FRXA 4FMSA 3POXA
chains in the Genus database with same CATH superfamily
2MNHA 4FZMA 5GTHO 2Y0KA 3SYSA 1GFOA 1YS5A 3AA1B 1PRNA 1BT9A 3SZVA 3SZDA 1BH3A 5T5FA 4LSFA 4C00A 2FGQX 4JFBA 2Y7SA 3BRZA 4FT6A 3VZWX 3VE2A 4AYDC 1ORMA 3AA6A 4F4BA 3NJTA 2XE2A 3JTYA 5FVNA 4KRAA 3T0SA 2R4OA 1HXTA 2N2MA 4D65A 3O0EA 4O3WA 3VY8X 2PORA 4D64A 2J1NA 2X9KA 5JDPA 2IWVA 5G3AA 2ZFGA 4FRTA 3AA6B 5KAFO 4K3BA 3C5OA 4GCQA 5E79O 5IYUA 2ODJA 1GFQA 3HOLA 4U9CA 4FZNA 4XNKA 4BUMX 2XTRA 3PORA 2FGRA 1OPFA 2X27X 3PRNA 4N58A 5DL8A 3DWNA 3POUA 1BXWA 1OSMA 3BS0A 3DA4A 3FYXA 4N74A 3VY9X 4CTDA 4FZLA 2K4TA 4UB8O 4AKRA 1S5LO 3PGSA 3BRYA 4FQEA 5DL5A 1H6S1 2M06A 5DL7A 5PRNA 5ADXL 3UPGA 1G90A 4K3CA 2KDYA 5TISO 2ERVA 4Z3TA 1T16A 3VZTX 5EE2A 4FSPA 4AKRB 2JQYA 3HWBA 1T1LA 2R8AA 2XTQA 4FESA 4GF4A 4AZLA 1GFMA 4N75A 4C69X 4GHBA 4PJ0O 3LK3A 4KR4A 3SYBA 1ZHZA 4G75A 3K19A 4PUXA 2F1VA 3UU2A 4O3ZA 2R4LA 1Q9GA 2Y0HA 2ZLDA 3PGRA 5GV0A 5G26A 5GTIO 4LSHA 1ZHWA 2R88A 3LK3B 4FSOA 4GCSA 4D5UA 2JMMA 1E54A 4JCHA 3A0HO 4KR8A 4RLBA 4RLCA 3SY9A 2LHFA 4AYID 2LFUA 2PRNA 2W81C 3AA7A 3AAEA 3HOEA 2KZ7A 2R89A 3POQA 4QQ1A 4FUVA 8PRNA 4LSIA 4AUIA 5B5EO 2J4UP 4UB6O 1ZHYA 4AYNA 1QJ8A 1IZNA 2QTKA 1ZHXA 3AA7B 3AAEB 2KZ7B 3VZUX 5KAIO 2KC0A 3WI4A 2N2LA 1GFNA 3V8UA 2M07A 2Y0LA 3AAAA 4O3XB 3HW9A 3PQUA 2XG6A 1HXXA 1IZNB 2WJRA 3PF1A 3DWOX 3A0BO 3PQSA 5ADXK 3TZGA 3LK41 4PR7A 2MHLA 2WVPA 5AFUK 7PRNA 3AAAB 2F1TA 3KVDD 3EMNX 2XE1A 3VE1A 1Q9FA 4GCPA 1GFPA 4AFKA 3QRAA 4C4VA 2OMFA 4RL9A 3JCUO 4AYEC 6PRNA 1MM4A 2IWWA 3KZIO 2O4VA 2YPVA 2AXTO 2K0LA 1MM5A 2KXPA 2XE3A 3A2SX 4FOZA 4LSEA 4RJWA 4RJXA 4C4VB 1MPFA 3GP6A 3LK42 3QRCA 4O3YA 4AKMA 3RBHA 4XNLA 3T20A 3DZMA 5DL6A 2GE4A 1QJPA 2XMXA 2KXPB 3NSGA 3T24A 1HXUA 2YNKA 1P4TA 1THQA 4O49A 5AFUL 3AA0A 3LK2A 3G7GA 5B66O 5D5DA 4N59A 1QJ9A 2R4PA 2XE5A 2W80C 3DA3A 4G76A 4O4UA 2R4NA 4E1TA 1ZHTA 3AA0B 1PHOA 3LK2B 4IL6O 3SY7A 3UAQA 3PGUA 4E1SA 2F1CX 3WI5A 5G38A 2Y2XA 3AA1A 3WU2O 2WJQA 4FRXA 4FMSA 4AYMC 4B61A 5H2FO 4O4XA 3POXA 5G39A
chains in the Genus database with same CATH topology
2MNHA 4FZMA 2Y0KA 3SYSA 1GFOA 1YS5A 3AA1B 1PRNA 1BT9A 3SZVA 3SZDA 1BH3A 5T5FA 4LSFA 2FGQX 4JFBA 2Y7SA 4FT6A 3VZWX 3VE2A 4AYDC 1ORMA 3AA6A 4F4BA 2XE2A 3JTYA 5FVNA 4KRAA 3T0SA 1HXTA 2N2MA 4D65A 3O0EA 4O3WA 3VY8X 2PORA 4D64A 2J1NA 5JDPA 2ZFGA 4FRTA 3AA6B 3C5OA 4GCQA 5IYUA 2ODJA 1GFQA 3HOLA 4U9CA 4FZNA 4XNKA 4BUMX 2XTRA 3PORA 2FGRA 1OPFA 2X27X 3PRNA 4N58A 5DL8A 3POUA 1BXWA 1OSMA 3DA4A 3FYXA 3VY9X 4FZLA 2K4TA 4AKRA 5PRNA 5ADXL 5DL5A 1H6S1 2M06A 5DL7A 3UPGA 1G90A 2KDYA 2ERVA 4Z3TA 3VZTX 5EE2A 4FSPA 4AKRB 3HWBA 2XTQA 4AZLA 4FESA 4GF4A 1GFMA 4C69X 4GHBA 3LK3A 4KR4A 3SYBA 1ZHZA 4G75A 3K19A 4PUXA 2F1VA 3UU2A 4O3ZA 2Y0HA 1Q9GA 2ZLDA 5GV0A 5G26A 4LSHA 1ZHWA 3LK3B 4FSOA 4GCSA 4D5UA 2JMMA 1E54A 4JCHA 4KR8A 4RLBA 4RLCA 3SY9A 2LHFA 4AYID 2LFUA 2PRNA 2W81C 3AA7A 3AAEA 3HOEA 2KZ7A 3POQA 4QQ1A 4FUVA 8PRNA 4LSIA 4AUIA 2J4UP 1ZHYA 4AYNA 1QJ8A 1IZNA 2QTKA 1ZHXA 3AA7B 3AAEB 2KZ7B 3VZUX 3WI4A 2KC0A 2N2LA 1GFNA 3V8UA 2M07A 2Y0LA 3AAAA 4O3XB 3HW9A 3PQUA 2XG6A 1HXXA 1IZNB 3PQSA 5ADXK 3TZGA 3LK41 2MHLA 5AFUK 7PRNA 3AAAB 2F1TA 3KVDD 3EMNX 2XE1A 3VE1A 1Q9FA 4GCPA 1GFPA 4AFKA 3QRAA 2OMFA 4RL9A 6PRNA 4AYEC 1MM4A 2O4VA 2YPVA 2K0LA 1MM5A 2KXPA 2XE3A 3A2SX 4FOZA 4LSEA 4RJWA 4RJXA 1MPFA 3GP6A 3LK42 3QRCA 4O3YA 4AKMA 3RBHA 4XNLA 3T20A 5DL6A 2GE4A 2XMXA 1QJPA 2KXPB 3NSGA 3T24A 1HXUA 2YNKA 1P4TA 1THQA 4O49A 5AFUL 3AA0A 3LK2A 3G7GA 5D5DA 4N59A 1QJ9A 2XE5A 2W80C 3DA3A 4G76A 4O4UA 4E1TA 1ZHTA 3AA0B 1PHOA 3LK2B 3SY7A 3UAQA 4E1SA 3WI5A 2Y2XA 3AA1A 4FRXA 4FMSA 4AYMC 4B61A 4O4XA 3POXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y0K A;  3SYS A;  1GFO A;  1PRN A;  1BT9 A;  3SZV A;  3SZD A;  1BH3 A;  4LSF A;  2FGQ X;  4JFB A;  4FT6 A;  3VZW X;  2XE2 A;  3JTY A;  5FVN A;  4KRA A;  3T0S A;  1HXT A;  4D65 A;  3O0E A;  3VY8 X;  4D64 A;  2POR A;  2J1N A;  5JDP A;  2ZFG A;  4FRT A;  4GCQ A;  2ODJ A;  1GFQ A;  4BUM X;  3POR A;  2FGR A;  1OPF A;  3PRN A;  5DL8 A;  3POU A;  1OSM A;  3VY9 X;  3FYX A;  2K4T A;  5PRN A;  5DL5 A;  1H6S 1;  5DL7 A;  3UPG A;  3VZT X;  4FSP A;  3HWB A;  1GFM A;  4C69 X;  4KR4 A;  3SYB A;  3K19 A;  3UU2 A;  2Y0H A;  2ZLD A;  4LSH A;  4FSO A;  4GCS A;  4D5U A;  1E54 A;  4KR8 A;  3SY9 A;  2PRN A;  3POQ A;  8PRN A;  4LSI A;  4AUI A;  2J4U P;  2QTK A;  3WI4 A;  3VZU X;  1GFN A;  2Y0L A;  3HW9 A;  2XG6 A;  1HXX A;  7PRN A;  3EMN X;  2XE1 A;  4GCP A;  1GFP A;  2OMF A;  6PRN A;  2O4V A;  4RJW A;  2XE3 A;  3A2S X;  4FOZ A;  4LSE A;  4RJX A;  1MPF A;  3T20 A;  5DL6 A;  3T24 A;  3NSG A;  1HXU A;  2XE5 A;  1PHO A;  3SY7 A;  3WI5 A;  2Y2X A;  4FRX A;  4FMS A;  3POX A; 
#chains in the Genus database with same CATH topology
 2MNH A;  4FZM A;  5GTH O;  2Y0K A;  3SYS A;  1GFO A;  1YS5 A;  3AA1 B;  1PRN A;  1BT9 A;  3SZV A;  3SZD A;  1BH3 A;  5T5F A;  4LSF A;  4C00 A;  2FGQ X;  4JFB A;  2Y7S A;  3BRZ A;  4FT6 A;  3VZW X;  3VE2 A;  4AYD C;  1ORM A;  3AA6 A;  4F4B A;  3NJT A;  2XE2 A;  3JTY A;  5FVN A;  4KRA A;  3T0S A;  2R4O A;  1HXT A;  2N2M A;  4D65 A;  3O0E A;  4O3W A;  3VY8 X;  2POR A;  4D64 A;  2J1N A;  2X9K A;  5JDP A;  2IWV A;  5G3A A;  2ZFG A;  4FRT A;  3AA6 B;  5KAF O;  4K3B A;  3C5O A;  4GCQ A;  5E79 O;  5IYU A;  2ODJ A;  1GFQ A;  3HOL A;  4U9C A;  4FZN A;  4XNK A;  4BUM X;  2XTR A;  3POR A;  2FGR A;  1OPF A;  2X27 X;  3PRN A;  4N58 A;  5DL8 A;  3DWN A;  3POU A;  1BXW A;  1OSM A;  3BS0 A;  3DA4 A;  3FYX A;  4N74 A;  3VY9 X;  4CTD A;  4FZL A;  2K4T A;  4UB8 O;  4AKR A;  1S5L O;  3PGS A;  3BRY A;  4FQE A;  5DL5 A;  1H6S 1;  2M06 A;  5DL7 A;  5PRN A;  5ADX L;  3UPG A;  1G90 A;  4K3C A;  2KDY A;  5TIS O;  2ERV A;  4Z3T A;  1T16 A;  3VZT X;  5EE2 A;  4FSP A;  4AKR B;  2JQY A;  3HWB A;  1T1L A;  2R8A A;  2XTQ A;  4FES A;  4GF4 A;  4AZL A;  1GFM A;  4N75 A;  4C69 X;  4GHB A;  4PJ0 O;  3LK3 A;  4KR4 A;  3SYB A;  1ZHZ A;  4G75 A;  3K19 A;  4PUX A;  2F1V A;  3UU2 A;  4O3Z A;  2R4L A;  1Q9G A;  2Y0H A;  2ZLD A;  3PGR A;  5GV0 A;  5G26 A;  5GTI O;  4LSH A;  1ZHW A;  2R88 A;  3LK3 B;  4FSO A;  4GCS A;  4D5U A;  2JMM A;  1E54 A;  4JCH A;  3A0H O;  4KR8 A;  4RLB A;  4RLC A;  3SY9 A;  2LHF A;  4AYI D;  2LFU A;  2PRN A;  2W81 C;  3AA7 A;  3AAE A;  3HOE A;  2KZ7 A;  2R89 A;  3POQ A;  4QQ1 A;  4FUV A;  8PRN A;  4LSI A;  4AUI A;  5B5E O;  2J4U P;  4UB6 O;  1ZHY A;  4AYN A;  1QJ8 A;  1IZN A;  2QTK A;  1ZHX A;  3AA7 B;  3AAE B;  2KZ7 B;  3VZU X;  5KAI O;  2KC0 A;  3WI4 A;  2N2L A;  1GFN A;  3V8U A;  2M07 A;  2Y0L A;  3AAA A;  4O3X B;  3HW9 A;  3PQU A;  2XG6 A;  1HXX A;  1IZN B;  2WJR A;  3PF1 A;  3DWO X;  3A0B O;  3PQS A;  5ADX K;  3TZG A;  3LK4 1;  4PR7 A;  2MHL A;  2WVP A;  5AFU K;  7PRN A;  3AAA B;  2F1T A;  3KVD D;  3EMN X;  2XE1 A;  3VE1 A;  1Q9F A;  4GCP A;  1GFP A;  4AFK A;  3QRA A;  4C4V A;  2OMF A;  4RL9 A;  3JCU O;  4AYE C;  6PRN A;  1MM4 A;  2IWW A;  3KZI O;  2O4V A;  2YPV A;  2AXT O;  2K0L A;  1MM5 A;  2KXP A;  2XE3 A;  3A2S X;  4FOZ A;  4LSE A;  4RJW A;  4RJX A;  4C4V B;  1MPF A;  3GP6 A;  3LK4 2;  3QRC A;  4O3Y A;  4AKM A;  3RBH A;  4XNL A;  3T20 A;  3DZM A;  5DL6 A;  2GE4 A;  1QJP A;  2XMX A;  2KXP B;  3NSG A;  3T24 A;  1HXU A;  2YNK A;  1P4T A;  1THQ A;  4O49 A;  5AFU L;  3AA0 A;  3LK2 A;  3G7G A;  5B66 O;  5D5D A;  4N59 A;  1QJ9 A;  2R4P A;  2XE5 A;  2W80 C;  3DA3 A;  4G76 A;  4O4U A;  2R4N A;  4E1T A;  1ZHT A;  3AA0 B;  1PHO A;  3LK2 B;  4IL6 O;  3SY7 A;  3UAQ A;  3PGU A;  4E1S A;  2F1C X;  3WI5 A;  5G38 A;  2Y2X A;  3AA1 A;  3WU2 O;  2WJQ A;  4FRX A;  4FMS A;  4AYM C;  4B61 A;  5H2F O;  4O4X A;  3POX A;  5G39 A; 
#chains in the Genus database with same CATH homology
 2MNH A;  4FZM A;  2Y0K A;  3SYS A;  1GFO A;  1YS5 A;  3AA1 B;  1PRN A;  1BT9 A;  3SZV A;  3SZD A;  1BH3 A;  5T5F A;  4LSF A;  2FGQ X;  4JFB A;  2Y7S A;  4FT6 A;  3VZW X;  3VE2 A;  4AYD C;  1ORM A;  3AA6 A;  4F4B A;  2XE2 A;  3JTY A;  5FVN A;  4KRA A;  3T0S A;  1HXT A;  2N2M A;  4D65 A;  3O0E A;  4O3W A;  3VY8 X;  2POR A;  4D64 A;  2J1N A;  5JDP A;  2ZFG A;  4FRT A;  3AA6 B;  3C5O A;  4GCQ A;  5IYU A;  2ODJ A;  1GFQ A;  3HOL A;  4U9C A;  4FZN A;  4XNK A;  4BUM X;  2XTR A;  3POR A;  2FGR A;  1OPF A;  2X27 X;  3PRN A;  4N58 A;  5DL8 A;  3POU A;  1BXW A;  1OSM A;  3DA4 A;  3FYX A;  3VY9 X;  4FZL A;  2K4T A;  4AKR A;  5PRN A;  5ADX L;  5DL5 A;  1H6S 1;  2M06 A;  5DL7 A;  3UPG A;  1G90 A;  2KDY A;  2ERV A;  4Z3T A;  3VZT X;  5EE2 A;  4FSP A;  4AKR B;  3HWB A;  2XTQ A;  4AZL A;  4FES A;  4GF4 A;  1GFM A;  4C69 X;  4GHB A;  3LK3 A;  4KR4 A;  3SYB A;  1ZHZ A;  4G75 A;  3K19 A;  4PUX A;  2F1V A;  3UU2 A;  4O3Z A;  2Y0H A;  1Q9G A;  2ZLD A;  5GV0 A;  5G26 A;  4LSH A;  1ZHW A;  3LK3 B;  4FSO A;  4GCS A;  4D5U A;  2JMM A;  1E54 A;  4JCH A;  4KR8 A;  4RLB A;  4RLC A;  3SY9 A;  2LHF A;  4AYI D;  2LFU A;  2PRN A;  2W81 C;  3AA7 A;  3AAE A;  3HOE A;  2KZ7 A;  3POQ A;  4QQ1 A;  4FUV A;  8PRN A;  4LSI A;  4AUI A;  2J4U P;  1ZHY A;  4AYN A;  1QJ8 A;  1IZN A;  2QTK A;  1ZHX A;  3AA7 B;  3AAE B;  2KZ7 B;  3VZU X;  3WI4 A;  2KC0 A;  2N2L A;  1GFN A;  3V8U A;  2M07 A;  2Y0L A;  3AAA A;  4O3X B;  3HW9 A;  3PQU A;  2XG6 A;  1HXX A;  1IZN B;  3PQS A;  5ADX K;  3TZG A;  3LK4 1;  2MHL A;  5AFU K;  7PRN A;  3AAA B;  2F1T A;  3KVD D;  3EMN X;  2XE1 A;  3VE1 A;  1Q9F A;  4GCP A;  1GFP A;  4AFK A;  3QRA A;  2OMF A;  4RL9 A;  6PRN A;  4AYE C;  1MM4 A;  2O4V A;  2YPV A;  2K0L A;  1MM5 A;  2KXP A;  2XE3 A;  3A2S X;  4FOZ A;  4LSE A;  4RJW A;  4RJX A;  1MPF A;  3GP6 A;  3LK4 2;  3QRC A;  4O3Y A;  4AKM A;  3RBH A;  4XNL A;  3T20 A;  5DL6 A;  2GE4 A;  2XMX A;  1QJP A;  2KXP B;  3NSG A;  3T24 A;  1HXU A;  2YNK A;  1P4T A;  1THQ A;  4O49 A;  5AFU L;  3AA0 A;  3LK2 A;  3G7G A;  5D5D A;  4N59 A;  1QJ9 A;  2XE5 A;  2W80 C;  3DA3 A;  4G76 A;  4O4U A;  4E1T A;  1ZHT A;  3AA0 B;  1PHO A;  3LK2 B;  3SY7 A;  3UAQ A;  4E1S A;  3WI5 A;  2Y2X A;  3AA1 A;  4FRX A;  4FMS A;  4AYM C;  4B61 A;  4O4X A;  3POX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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