3WI5A

Crystal structure of the loop 7 mutant porb from neisseria meningitidis serogroup b
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
312
structure length
312
Chain Sequence
b'DVTLYGTIKAGVETSRSVFHQNGQVTEVTTATGIVDLGSKIGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWGNRQSFIGLKGGFGKLRVGRLNSVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQEGLNIEKYQIHRLVSGYDNDALYASVAVQQQDAKLTDASNSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGLVAKADIGNRYDQVVVGAEYDFSKRTSALVSAGWLQEGKGENKFVATAGGVGLRHKF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystallographic analysis of Neisseria meningitidis PorB extracellular loops potentially implicated in TLR2 recognition.
pubmed doi rcsb
molecule keywords Major outer membrane protein P.IB
source organism Neisseria meningitidis
molecule tags Membrane protein
total genus 77
structure length 312
sequence length 312
ec nomenclature
pdb deposition date 2013-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3wi5A00
5JDPA 7PRNA 3PRNA 3SZVA 2ODJA 4FOZA 4LSFA 4AUIA 3SYSA 5DL7A 3VZWX 2XE1A 4FSPA 2XG6A 1GFOA 3SY7A 2XE3A 3SZDA 2Y2XA 2O4VA 3POXA 5DL5A 4LSIA 3T0SA 4FRTA 3T24A 3EMNX 3POQA 2PORA 1H6S1 5DL6A 1E54A 4JFBA 1GFMA 2FGRA 4FRXA 4FSOA 2K4TA 3O0EA 3SY9A 1GFQA 4FMSA 4KR8A 5FVNA 1PRNA 8PRNA 4LSEA 1HXTA 3A2SX 1PHOA 4BUMX 2FGQX 3T20A 3POUA 4D5UA 2Y0KA 4KRAA 3SYBA 2ZLDA 3HWBA 3HW9A 1OSMA 3VZUX 5PRNA 2PRNA 4D64A 3NSGA 1BT9A 3PORA 2XE5A 4RJWA 2QTKA 3VY9X 4GCSA 5DL8A 2XE2A 1OPFA 3K19A 1HXUA 3VY8X 2J4UP 4KR4A 4GCQA 1GFNA 4FT6A 2ZFGA 4GCPA 3VZTX 3FYXA 1BH3A 4RJXA 1HXXA 4D65A 4C69X 1MPFA 3UU2A 6PRNA 3JTYA 1GFPA 2J1NA 3UPGA 2OMFA 2Y0HA 3WI4A 2Y0LA 3WI5A 4LSHA
chains in the Genus database with same CATH superfamily
2R89A 5JDPA 1ZHWA 3A0HO 7PRNA 3PRNA 4CTDA 3SZVA 2ODJA 4QQ1A 2WVPA 4FOZA 4LSFA 4AUIA 1MM5A 2R8AA 3AAAB 4FQEA 5KAIO 5E79O 3SYSA 4UB8O 5DL7A 4JCHA 3VZWX 2W80C 2XE1A 4FSPA 4GF4A 2XG6A 1GFOA 4C4VB 3PGRA 3PGUA 4PJ0O 4FZLA 2Y7SA 3SY7A 2XE3A 3SZDA 2Y2XA 2JMMA 3DA4A 1QJ9A 2M06A 2MNHA 2O4VA 3POXA 3PQUA 4O49A 4O4XA 5AFUL 2KZ7B 3PGSA 2K0LA 4LSIA 5DL5A 3WU2O 5ADXL 3T0SA 3AA7A 4FRTA 3T24A 3EMNX 3POQA 2PORA 1H6S1 2M07A 3BRYA 3DWNA 4RLCA 5DL6A 1E54A 4RL9A 4JFBA 2LHFA 4AFKA 4O3ZA 3PF1A 4AYEC 1GFMA 2FGRA 4K3CA 5TISO 4FRXA 4FSOA 1MM4A 2N2LA 5GV0A 2K4TA 2R4OA 3AA6A 3O0EA 2KDYA 3SY9A 4AYNA 4IL6O 1GFQA 4FMSA 2R4NA 4AKRB 3VE1A 1T16A 3AA0A 5GTIO 4XNKA 3KVDD 4G75A 4KR8A 2X27X 5FVNA 4N59A 2MHLA 1PRNA 4G76A 3QRCA 4E1SA 8PRNA 4LSEA 3AA1A 3DWOX 3LK2A 1HXTA 3A2SX 1PHOA 1T1LA 4BUMX 4Z3TA 2FGQX 2LFUA 2IWVA 3POUA 4D5UA 2W81C 2Y0KA 3T20A 3TZGA 4KRAA 3AAAA 3SYBA 2WJQA 2ZLDA 3LK3B 1ZHZA 1YS5A 3HWBA 2F1TA 4E1TA 1Q9GA 4AYMC 4F4BA 3LK42 4O3WA 1ZHTA 3HW9A 5T5FA 1OSMA 1ZHXA 1ORMA 3VZUX 2WJRA 2PRNA 5PRNA 3AAEA 1IZNB 4C00A 2XTQA 5B5EO 5GTHO 4K3BA 5IYUA 1G90A 4O4UA 4D64A 5G38A 3NSGA 1BT9A 5KAFO 2KZ7A 2XE5A 3PORA 4GHBA 1S5LO 2AXTO 3C5OA 4RJWA 3AA6B 1Q9FA 2QTKA 3VY9X 2KXPA 4B61A 4GCSA 3BRZA 3DA3A 2XTRA 3A0BO 3GP6A 3VE2A 2N2MA 4AYID 2XMXA 5DL8A 2XE2A 3DZMA 3KZIO 2IWWA 1OPFA 1ZHYA 1HXUA 3K19A 5G26A 1BXWA 3VY8X 4FESA 4N58A 4FUVA 4PUXA 3UAQA 2J4UP 2ERVA 1GFNA 1THQA 4FT6A 4GCQA 4KR4A 5H2FO 1QJPA 2ZFGA 3AA7B 3QRAA 4O3YA 4AKMA 4AKRA 4GCPA 3VZTX 5G39A 3FYXA 4AYDC 5G3AA 4C4VA 1P4TA 2YPVA 1BH3A 4N74A 4RJXA 4O3XB 1HXXA 4D65A 2F1VA 4C69X 1MPFA 1QJ8A 3BS0A 5B66O 3UU2A 6PRNA 2F1CX 2R4LA 3AAEB 3JTYA 4RLBA 1GFPA 2X9KA 2J1NA 3NJTA 5AFUK 3UPGA 4AZLA 3LK2B 3RBHA 2GE4A 4U9CA 4XNLA 2OMFA 5D5DA 3V8UA 3LK3A 4FZNA 2R4PA 2Y0HA 3LK41 4LSHA 3WI4A 3AA0B 2KC0A 3HOEA 2KXPB 2YNKA 3HOLA 3JCUO 3PQSA 4FZMA 4UB6O 4N75A 5EE2A 2JQYA 5ADXK 2Y0LA 3G7GA 4PR7A 3AA1B 3WI5A 1IZNA 2R88A
chains in the Genus database with same CATH topology
5JDPA 1ZHWA 7PRNA 3PRNA 3SZVA 2ODJA 4QQ1A 4FOZA 4LSFA 4AUIA 1MM5A 3AAAB 3SYSA 5DL7A 4JCHA 3VZWX 2W80C 2XE1A 4FSPA 4GF4A 2XG6A 1GFOA 4FZLA 2Y7SA 3SY7A 2XE3A 3SZDA 2Y2XA 2JMMA 3DA4A 1QJ9A 2M06A 2MNHA 2O4VA 3POXA 3PQUA 4O49A 4O4XA 5AFUL 2KZ7B 5DL5A 2K0LA 4LSIA 5ADXL 3T0SA 3AA7A 4FRTA 3T24A 3EMNX 3POQA 2PORA 1H6S1 2M07A 4RLCA 5DL6A 1E54A 4RL9A 4JFBA 2LHFA 4AFKA 4O3ZA 4AYEC 1GFMA 2FGRA 4FRXA 4FSOA 1MM4A 2N2LA 5GV0A 2K4TA 3AA6A 3O0EA 2KDYA 3SY9A 4AYNA 1GFQA 4FMSA 4AKRB 3VE1A 3AA0A 4XNKA 3KVDD 4G75A 4KR8A 2X27X 5FVNA 4N59A 2MHLA 1PRNA 4G76A 3QRCA 4E1SA 8PRNA 4LSEA 3AA1A 3LK2A 1HXTA 3A2SX 1PHOA 4BUMX 4Z3TA 2FGQX 2LFUA 3T20A 3POUA 4D5UA 2W81C 2Y0KA 3TZGA 4KRAA 3AAAA 3SYBA 2ZLDA 3LK3B 1ZHZA 1YS5A 3HWBA 2F1TA 4E1TA 1Q9GA 4AYMC 4F4BA 3LK42 4O3WA 1ZHTA 3HW9A 5T5FA 1OSMA 1ZHXA 1ORMA 3VZUX 5PRNA 2PRNA 3AAEA 1IZNB 2XTQA 5IYUA 1G90A 4O4UA 4D64A 3NSGA 1BT9A 2KZ7A 2XE5A 3PORA 4GHBA 4RJWA 3C5OA 3AA6B 1Q9FA 2QTKA 3VY9X 2KXPA 4B61A 4GCSA 3DA3A 2XTRA 3GP6A 3VE2A 2N2MA 4AYID 2XMXA 5DL8A 2XE2A 1OPFA 1ZHYA 1HXUA 3K19A 5G26A 1BXWA 3VY8X 4FESA 4N58A 4FUVA 4PUXA 3UAQA 2J4UP 2ERVA 1GFNA 1THQA 4FT6A 4GCQA 4KR4A 1QJPA 2ZFGA 3AA7B 3QRAA 4O3YA 4AKMA 4AKRA 4GCPA 3VZTX 3FYXA 4AYDC 1P4TA 2YPVA 1BH3A 4RJXA 4O3XB 1HXXA 4D65A 2F1VA 4C69X 1MPFA 1QJ8A 3UU2A 6PRNA 3AAEB 3JTYA 4RLBA 1GFPA 2J1NA 5AFUK 3UPGA 4AZLA 3LK2B 3RBHA 2GE4A 4U9CA 4XNLA 2OMFA 5D5DA 3V8UA 3LK3A 4FZNA 2Y0HA 5ADXK 3LK41 3WI4A 3AA0B 2KC0A 3HOEA 2KXPB 2YNKA 3HOLA 3PQSA 4FZMA 5EE2A 2Y0LA 3G7GA 3WI5A 3AA1B 1IZNA 4LSHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JDP A;  7PRN A;  3PRN A;  3SZV A;  2ODJ A;  4FOZ A;  4LSF A;  4AUI A;  3SYS A;  5DL7 A;  3VZW X;  2XE1 A;  4FSP A;  2XG6 A;  1GFO A;  3SY7 A;  2XE3 A;  3SZD A;  2Y2X A;  2O4V A;  3POX A;  5DL5 A;  4LSI A;  3T0S A;  4FRT A;  3T24 A;  3EMN X;  3POQ A;  2POR A;  1H6S 1;  5DL6 A;  1E54 A;  4JFB A;  1GFM A;  2FGR A;  4FRX A;  4FSO A;  2K4T A;  3O0E A;  3SY9 A;  1GFQ A;  4FMS A;  4KR8 A;  5FVN A;  1PRN A;  8PRN A;  4LSE A;  1HXT A;  3A2S X;  1PHO A;  4BUM X;  2FGQ X;  3T20 A;  3POU A;  4D5U A;  2Y0K A;  4KRA A;  3SYB A;  2ZLD A;  3HWB A;  3HW9 A;  1OSM A;  3VZU X;  5PRN A;  2PRN A;  4D64 A;  3NSG A;  1BT9 A;  3POR A;  2XE5 A;  4RJW A;  2QTK A;  3VY9 X;  4GCS A;  5DL8 A;  2XE2 A;  1OPF A;  3K19 A;  1HXU A;  3VY8 X;  2J4U P;  4KR4 A;  4GCQ A;  1GFN A;  4FT6 A;  2ZFG A;  4GCP A;  3VZT X;  3FYX A;  1BH3 A;  4RJX A;  1HXX A;  4D65 A;  4C69 X;  1MPF A;  3UU2 A;  6PRN A;  3JTY A;  1GFP A;  2J1N A;  3UPG A;  2OMF A;  2Y0H A;  3WI4 A;  2Y0L A;  3WI5 A;  4LSH A; 
#chains in the Genus database with same CATH topology
 2R89 A;  5JDP A;  1ZHW A;  3A0H O;  7PRN A;  3PRN A;  4CTD A;  3SZV A;  2ODJ A;  4QQ1 A;  2WVP A;  4FOZ A;  4LSF A;  4AUI A;  1MM5 A;  2R8A A;  3AAA B;  4FQE A;  5KAI O;  5E79 O;  3SYS A;  4UB8 O;  5DL7 A;  4JCH A;  3VZW X;  2W80 C;  2XE1 A;  4FSP A;  4GF4 A;  2XG6 A;  1GFO A;  4C4V B;  3PGR A;  3PGU A;  4PJ0 O;  4FZL A;  2Y7S A;  3SY7 A;  2XE3 A;  3SZD A;  2Y2X A;  2JMM A;  3DA4 A;  1QJ9 A;  2M06 A;  2MNH A;  2O4V A;  3POX A;  3PQU A;  4O49 A;  4O4X A;  5AFU L;  2KZ7 B;  3PGS A;  2K0L A;  4LSI A;  5DL5 A;  3WU2 O;  5ADX L;  3T0S A;  3AA7 A;  4FRT A;  3T24 A;  3EMN X;  3POQ A;  2POR A;  1H6S 1;  2M07 A;  3BRY A;  3DWN A;  4RLC A;  5DL6 A;  1E54 A;  4RL9 A;  4JFB A;  2LHF A;  4AFK A;  4O3Z A;  3PF1 A;  4AYE C;  1GFM A;  2FGR A;  4K3C A;  5TIS O;  4FRX A;  4FSO A;  1MM4 A;  2N2L A;  5GV0 A;  2K4T A;  2R4O A;  3AA6 A;  3O0E A;  2KDY A;  3SY9 A;  4AYN A;  4IL6 O;  1GFQ A;  4FMS A;  2R4N A;  4AKR B;  3VE1 A;  1T16 A;  3AA0 A;  5GTI O;  4XNK A;  3KVD D;  4G75 A;  4KR8 A;  2X27 X;  5FVN A;  4N59 A;  2MHL A;  1PRN A;  4G76 A;  3QRC A;  4E1S A;  8PRN A;  4LSE A;  3AA1 A;  3DWO X;  3LK2 A;  1HXT A;  3A2S X;  1PHO A;  1T1L A;  4BUM X;  4Z3T A;  2FGQ X;  2LFU A;  2IWV A;  3POU A;  4D5U A;  2W81 C;  2Y0K A;  3T20 A;  3TZG A;  4KRA A;  3AAA A;  3SYB A;  2WJQ A;  2ZLD A;  3LK3 B;  1ZHZ A;  1YS5 A;  3HWB A;  2F1T A;  4E1T A;  1Q9G A;  4AYM C;  4F4B A;  3LK4 2;  4O3W A;  1ZHT A;  3HW9 A;  5T5F A;  1OSM A;  1ZHX A;  1ORM A;  3VZU X;  2WJR A;  2PRN A;  5PRN A;  3AAE A;  1IZN B;  4C00 A;  2XTQ A;  5B5E O;  5GTH O;  4K3B A;  5IYU A;  1G90 A;  4O4U A;  4D64 A;  5G38 A;  3NSG A;  1BT9 A;  5KAF O;  2KZ7 A;  2XE5 A;  3POR A;  4GHB A;  1S5L O;  2AXT O;  3C5O A;  4RJW A;  3AA6 B;  1Q9F A;  2QTK A;  3VY9 X;  2KXP A;  4B61 A;  4GCS A;  3BRZ A;  3DA3 A;  2XTR A;  3A0B O;  3GP6 A;  3VE2 A;  2N2M A;  4AYI D;  2XMX A;  5DL8 A;  2XE2 A;  3DZM A;  3KZI O;  2IWW A;  1OPF A;  1ZHY A;  1HXU A;  3K19 A;  5G26 A;  1BXW A;  3VY8 X;  4FES A;  4N58 A;  4FUV A;  4PUX A;  3UAQ A;  2J4U P;  2ERV A;  1GFN A;  1THQ A;  4FT6 A;  4GCQ A;  4KR4 A;  5H2F O;  1QJP A;  2ZFG A;  3AA7 B;  3QRA A;  4O3Y A;  4AKM A;  4AKR A;  4GCP A;  3VZT X;  5G39 A;  3FYX A;  4AYD C;  5G3A A;  4C4V A;  1P4T A;  2YPV A;  1BH3 A;  4N74 A;  4RJX A;  4O3X B;  1HXX A;  4D65 A;  2F1V A;  4C69 X;  1MPF A;  1QJ8 A;  3BS0 A;  5B66 O;  3UU2 A;  6PRN A;  2F1C X;  2R4L A;  3AAE B;  3JTY A;  4RLB A;  1GFP A;  2X9K A;  2J1N A;  3NJT A;  5AFU K;  3UPG A;  4AZL A;  3LK2 B;  3RBH A;  2GE4 A;  4U9C A;  4XNL A;  2OMF A;  5D5D A;  3V8U A;  3LK3 A;  4FZN A;  2R4P A;  2Y0H A;  3LK4 1;  4LSH A;  3WI4 A;  3AA0 B;  2KC0 A;  3HOE A;  2KXP B;  2YNK A;  3HOL A;  3JCU O;  3PQS A;  4FZM A;  4UB6 O;  4N75 A;  5EE2 A;  2JQY A;  5ADX K;  2Y0L A;  3G7G A;  4PR7 A;  3AA1 B;  3WI5 A;  1IZN A;  2R88 A; 
#chains in the Genus database with same CATH homology
 5JDP A;  1ZHW A;  7PRN A;  3PRN A;  3SZV A;  2ODJ A;  4QQ1 A;  4FOZ A;  4LSF A;  4AUI A;  1MM5 A;  3AAA B;  3SYS A;  5DL7 A;  4JCH A;  3VZW X;  2W80 C;  2XE1 A;  4FSP A;  4GF4 A;  2XG6 A;  1GFO A;  4FZL A;  2Y7S A;  3SY7 A;  2XE3 A;  3SZD A;  2Y2X A;  2JMM A;  3DA4 A;  1QJ9 A;  2M06 A;  2MNH A;  2O4V A;  3POX A;  3PQU A;  4O49 A;  4O4X A;  5AFU L;  2KZ7 B;  5DL5 A;  2K0L A;  4LSI A;  5ADX L;  3T0S A;  3AA7 A;  4FRT A;  3T24 A;  3EMN X;  3POQ A;  2POR A;  1H6S 1;  2M07 A;  4RLC A;  5DL6 A;  1E54 A;  4RL9 A;  4JFB A;  2LHF A;  4AFK A;  4O3Z A;  4AYE C;  1GFM A;  2FGR A;  4FRX A;  4FSO A;  1MM4 A;  2N2L A;  5GV0 A;  2K4T A;  3AA6 A;  3O0E A;  2KDY A;  3SY9 A;  4AYN A;  1GFQ A;  4FMS A;  4AKR B;  3VE1 A;  3AA0 A;  4XNK A;  3KVD D;  4G75 A;  4KR8 A;  2X27 X;  5FVN A;  4N59 A;  2MHL A;  1PRN A;  4G76 A;  3QRC A;  4E1S A;  8PRN A;  4LSE A;  3AA1 A;  3LK2 A;  1HXT A;  3A2S X;  1PHO A;  4BUM X;  4Z3T A;  2FGQ X;  2LFU A;  3T20 A;  3POU A;  4D5U A;  2W81 C;  2Y0K A;  3TZG A;  4KRA A;  3AAA A;  3SYB A;  2ZLD A;  3LK3 B;  1ZHZ A;  1YS5 A;  3HWB A;  2F1T A;  4E1T A;  1Q9G A;  4AYM C;  4F4B A;  3LK4 2;  4O3W A;  1ZHT A;  3HW9 A;  5T5F A;  1OSM A;  1ZHX A;  1ORM A;  3VZU X;  5PRN A;  2PRN A;  3AAE A;  1IZN B;  2XTQ A;  5IYU A;  1G90 A;  4O4U A;  4D64 A;  3NSG A;  1BT9 A;  2KZ7 A;  2XE5 A;  3POR A;  4GHB A;  4RJW A;  3C5O A;  3AA6 B;  1Q9F A;  2QTK A;  3VY9 X;  2KXP A;  4B61 A;  4GCS A;  3DA3 A;  2XTR A;  3GP6 A;  3VE2 A;  2N2M A;  4AYI D;  2XMX A;  5DL8 A;  2XE2 A;  1OPF A;  1ZHY A;  1HXU A;  3K19 A;  5G26 A;  1BXW A;  3VY8 X;  4FES A;  4N58 A;  4FUV A;  4PUX A;  3UAQ A;  2J4U P;  2ERV A;  1GFN A;  1THQ A;  4FT6 A;  4GCQ A;  4KR4 A;  1QJP A;  2ZFG A;  3AA7 B;  3QRA A;  4O3Y A;  4AKM A;  4AKR A;  4GCP A;  3VZT X;  3FYX A;  4AYD C;  1P4T A;  2YPV A;  1BH3 A;  4RJX A;  4O3X B;  1HXX A;  4D65 A;  2F1V A;  4C69 X;  1MPF A;  1QJ8 A;  3UU2 A;  6PRN A;  3AAE B;  3JTY A;  4RLB A;  1GFP A;  2J1N A;  5AFU K;  3UPG A;  4AZL A;  3LK2 B;  3RBH A;  2GE4 A;  4U9C A;  4XNL A;  2OMF A;  5D5D A;  3V8U A;  3LK3 A;  4FZN A;  2Y0H A;  5ADX K;  3LK4 1;  3WI4 A;  3AA0 B;  2KC0 A;  3HOE A;  2KXP B;  2YNK A;  3HOL A;  3PQS A;  4FZM A;  5EE2 A;  2Y0L A;  3G7G A;  3WI5 A;  3AA1 B;  1IZN A;  4LSH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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