3WI5A

Crystal structure of the loop 7 mutant porb from neisseria meningitidis serogroup b
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
312
structure length
312
Chain Sequence
DVTLYGTIKAGVETSRSVFHQNGQVTEVTTATGIVDLGSKIGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWGNRQSFIGLKGGFGKLRVGRLNSVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQEGLNIEKYQIHRLVSGYDNDALYASVAVQQQDAKLTDASNSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGLVAKADIGNRYDQVVVGAEYDFSKRTSALVSAGWLQEGKGENKFVATAGGVGLRHKF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Major outer membrane protein P.IB
publication title Crystallographic analysis of Neisseria meningitidis PorB extracellular loops potentially implicated in TLR2 recognition.
pubmed doi rcsb
source organism Neisseria meningitidis
total genus 77
structure length 312
sequence length 312
ec nomenclature
pdb deposition date 2013-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3wi5A00
4JFBA 2K4TA 4D64A 2Y0KA 2Y2XA 3PRNA 3VZUX 3SYSA 1GFQA 4FMSA 2O4VA 2QTKA 4LSHA 1E54A 1HXTA 1PRNA 3SYBA 3NSGA 4FT6A 2FGQX 2Y0HA 3POXA 3O0EA 5DL5A 1GFMA 2ZFGA 4RJWA 2J1NA 2XE5A 1OPFA 4FRTA 3JTYA 1HXXA 4LSIA 4D5UA 4KR4A 2PORA 2ODJA 3UU2A 5PRNA 3PORA 4GCSA 2J4UP 3T0SA 3FYXA 3T20A 3SY7A 3WI4A 3EMNX 4D65A 4BUMX 1MPFA 4LSEA 3POQA 3VY9X 4FSPA 4RJXA 2XE2A 1GFNA 3VZTX 5DL7A 3K19A 1BT9A 2XG6A 3WI5A 8PRNA 2XE1A 3VY8X 3SZDA 4FRXA 2OMFA 3UPGA 4LSFA 1BH3A 3HWBA 4KR8A 4FOZA 3HW9A 3SY9A 3VZWX 5DL6A 7PRNA 5FVNA 2Y0LA 3SZVA 2XE3A 1GFPA 4C69X 1GFOA 2FGRA 3T24A 3POUA 1HXUA 5DL8A 1OSMA 6PRNA 4FSOA 1PHOA 4GCPA 1H6S1 2ZLDA 4KRAA 4AUIA 3A2SX 4GCQA 5JDPA 2PRNA
chains in the Genus database with same CATH superfamily
2ERVA 4JFBA 4N59A 2X9KA 2K4TA 4D64A 2Y0KA 4FZNA 2R8AA 1ZHZA 2Y2XA 5G3AA 5TISO 3PRNA 1T16A 4N58A 3VZUX 4O4UA 4QQ1A 1GFQA 3G7GA 3SYSA 3UAQA 4AKMA 1ZHXA 3QRCA 3LK3B 4FMSA 4O3ZA 2MHLA 1QJPA 2O4VA 1ZHYA 3DWNA 1IZNA 2QTKA 2R4LA 4LSHA 1HXTA 1E54A 2R4PA 3AA1A 3DA3A 4AFKA 1PRNA 3SYBA 3BRYA 3NSGA 3PF1A 4FT6A 4O3YA 2FGQX 2Y0HA 3POXA 3BRZA 3DZMA 3O0EA 5DL5A 2KZ7A 1GFMA 2ZFGA 2W81C 4RJWA 3AAEB 3LK41 2J1NA 4AYID 2MNHA 3AA0A 4O3WA 2XE5A 1OPFA 4FRTA 2GE4A 5ADXL 3HOLA 3JTYA 4PR7A 2Y7SA 2YPVA 1HXXA 4C4VB 3A0BO 1T1LA 4LSIA 2R4NA 4D5UA 5B66O 3QRAA 4KR4A 1QJ9A 2PORA 2ODJA 3JCUO 3AA6A 3UU2A 1BXWA 1S5LO 2KXPB 5PRNA 4K3BA 3PORA 2KC0A 4GCSA 4FQEA 2J4UP 2AXTO 3LK2A 1MM4A 1Q9FA 3AA7B 3FYXA 4U9CA 3SY7A 3T0SA 4CTDA 3T20A 3WI4A 4FZLA 3EMNX 4AKRB 4D65A 4BUMX 2XTQA 2IWWA 1MPFA 2M07A 2XTRA 4UB8O 4AYNA 2R88A 4GF4A 2XMXA 4LSEA 3POQA 4RLCA 3VY9X 4AYMC 2R89A 2M06A 4FSPA 1THQA 4RJXA 2XE2A 1GFNA 1MM5A 5G26A 3VZTX 3NJTA 5DL7A 3VE1A 3PGSA 3BS0A 3DA4A 3AA1B 2JMMA 3A0HO 5G38A 4Z3TA 3DWOX 3K19A 1QJ8A 4FUVA 1BT9A 4GHBA 5GTIO 5AFUK 2XG6A 3C5OA 4G75A 2XE1A 4N75A 3WI5A 3AAEA 4K3CA 3VY8X 8PRNA 3KVDD 4F4BA 4E1TA 3AA0B 3LK42 3AAAA 5E79O 3SZDA 5KAIO 5KAFO 4FRXA 4O49A 2OMFA 5IYUA 3WU2O 3UPGA 4LSFA 4C00A 1BH3A 2W80C 3HWBA 4C4VA 3RBHA 4O3XB 5B5EO 3GP6A 4KR8A 4FZMA 1ORMA 2WJRA 3PQSA 4E1SA 4FOZA 3HW9A 4JCHA 4AYEC 3SY9A 2KXPA 4IL6O 3VZWX 3V8UA 5DL6A 2K0LA 1G90A 7PRNA 3AA7A 5FVNA 2Y0LA 5T5FA 3SZVA 5D5DA 3LK3A 4AZLA 2XE3A 2IWVA 1IZNB 1GFPA 4C69X 2FGRA 1GFOA 1YS5A 4G76A 3TZGA 4FESA 3PGUA 2F1VA 4O4XA 5GV0A 1ZHWA 2KZ7B 1P4TA 3T24A 3POUA 1HXUA 2N2LA 2JQYA 5DL8A 5AFUL 1OSMA 4UB6O 1Q9GA 6PRNA 5H2FO 4FSOA 2N2MA 4XNLA 2KDYA 4B61A 2WJQA 2LFUA 1PHOA 4RL9A 4GCPA 1H6S1 2R4OA 2F1TA 2ZLDA 3HOEA 4KRAA 4AUIA 2WVPA 3AA6B 3A2SX 4AYDC 4GCQA 4XNKA 3VE2A 5JDPA 2YNKA 5ADXK 2X27X 3AAAB 3PQUA 2LHFA 5G39A 3PGRA 3LK2B 5EE2A 2PRNA 4RLBA 1ZHTA 5GTHO 2F1CX 4PJ0O 3KZIO 4PUXA 4AKRA 4N74A
chains in the Genus database with same CATH topology
2ERVA 4JFBA 4N59A 2K4TA 4D64A 2Y0KA 4FZNA 2Y2XA 1ZHZA 3PRNA 4N58A 3VZUX 4O4UA 4QQ1A 1GFQA 3G7GA 3SYSA 3UAQA 4AKMA 1ZHXA 3QRCA 3LK3B 4FMSA 4O3ZA 2MHLA 1QJPA 2O4VA 1ZHYA 1IZNA 2QTKA 4LSHA 1HXTA 1E54A 3AA1A 3DA3A 4AFKA 1PRNA 3SYBA 3NSGA 4FT6A 4O3YA 2FGQX 2Y0HA 3POXA 3O0EA 5DL5A 2KZ7A 1GFMA 2ZFGA 2W81C 4RJWA 3AAEB 3LK41 2J1NA 4AYID 2MNHA 3AA0A 4O3WA 2XE5A 1OPFA 4FRTA 2GE4A 5ADXL 3HOLA 3JTYA 2Y7SA 2YPVA 1HXXA 4LSIA 4D5UA 3QRAA 4KR4A 1QJ9A 2PORA 2ODJA 3AA6A 3UU2A 1BXWA 2KXPB 5PRNA 3PORA 2KC0A 4GCSA 2J4UP 3LK2A 1MM4A 1Q9FA 3AA7B 3FYXA 4U9CA 3SY7A 3T0SA 3T20A 3WI4A 4FZLA 3EMNX 4AKRB 4D65A 4BUMX 2XTQA 1MPFA 2M07A 2XTRA 4AYNA 4LSEA 4GF4A 2XMXA 3POQA 4RLCA 3VY9X 4AYMC 4FSPA 2M06A 1THQA 4RJXA 2XE2A 1GFNA 1MM5A 5G26A 3VZTX 3VE1A 5DL7A 3DA4A 3AA1B 2JMMA 4Z3TA 3K19A 1QJ8A 4FUVA 1BT9A 4GHBA 5AFUK 2XG6A 3C5OA 4G75A 2XE1A 3WI5A 8PRNA 3AAEA 3VY8X 3KVDD 4F4BA 4E1TA 3AA0B 3LK42 3AAAA 3SZDA 4FRXA 4O49A 2OMFA 5IYUA 3UPGA 4LSFA 1BH3A 2W80C 3HWBA 3RBHA 4O3XB 3GP6A 4KR8A 4FZMA 1ORMA 3PQSA 4E1SA 4FOZA 3HW9A 4JCHA 4AYEC 3SY9A 2KXPA 3VZWX 3V8UA 5DL6A 2K0LA 1G90A 7PRNA 3AA7A 5FVNA 2Y0LA 5T5FA 3SZVA 5D5DA 3LK3A 4AZLA 2XE3A 1IZNB 1GFPA 4C69X 2FGRA 1GFOA 1YS5A 4G76A 3TZGA 4FESA 2F1VA 4O4XA 5GV0A 1ZHWA 2KZ7B 1P4TA 3T24A 3POUA 1HXUA 2N2LA 5DL8A 5AFUL 1OSMA 1Q9GA 6PRNA 4FSOA 2N2MA 4XNLA 2KDYA 4B61A 2LFUA 1PHOA 4RL9A 4GCPA 1H6S1 2ZLDA 2F1TA 3HOEA 4KRAA 4AUIA 3AA6B 3A2SX 4AYDC 4GCQA 4XNKA 3VE2A 5JDPA 2YNKA 5ADXK 2X27X 3AAAB 3PQUA 2LHFA 3LK2B 5EE2A 2PRNA 4RLBA 1ZHTA 4PUXA 4AKRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JFB A;  2K4T A;  4D64 A;  2Y0K A;  2Y2X A;  3PRN A;  3VZU X;  3SYS A;  1GFQ A;  4FMS A;  2O4V A;  2QTK A;  4LSH A;  1E54 A;  1HXT A;  1PRN A;  3SYB A;  3NSG A;  4FT6 A;  2FGQ X;  2Y0H A;  3POX A;  3O0E A;  5DL5 A;  1GFM A;  2ZFG A;  4RJW A;  2J1N A;  2XE5 A;  1OPF A;  4FRT A;  3JTY A;  1HXX A;  4LSI A;  4D5U A;  4KR4 A;  2POR A;  2ODJ A;  3UU2 A;  5PRN A;  3POR A;  4GCS A;  2J4U P;  3T0S A;  3FYX A;  3T20 A;  3SY7 A;  3WI4 A;  3EMN X;  4D65 A;  4BUM X;  1MPF A;  4LSE A;  3POQ A;  3VY9 X;  4FSP A;  4RJX A;  2XE2 A;  1GFN A;  3VZT X;  5DL7 A;  3K19 A;  1BT9 A;  2XG6 A;  3WI5 A;  8PRN A;  2XE1 A;  3VY8 X;  3SZD A;  4FRX A;  2OMF A;  3UPG A;  4LSF A;  1BH3 A;  3HWB A;  4KR8 A;  4FOZ A;  3HW9 A;  3SY9 A;  3VZW X;  5DL6 A;  7PRN A;  5FVN A;  2Y0L A;  3SZV A;  2XE3 A;  1GFP A;  4C69 X;  1GFO A;  2FGR A;  3T24 A;  3POU A;  1HXU A;  5DL8 A;  1OSM A;  6PRN A;  4FSO A;  1PHO A;  4GCP A;  1H6S 1;  2ZLD A;  4KRA A;  4AUI A;  3A2S X;  4GCQ A;  5JDP A;  2PRN A; 
#chains in the Genus database with same CATH topology
 2ERV A;  4JFB A;  4N59 A;  2X9K A;  2K4T A;  4D64 A;  2Y0K A;  4FZN A;  2R8A A;  1ZHZ A;  2Y2X A;  5G3A A;  5TIS O;  3PRN A;  1T16 A;  4N58 A;  3VZU X;  4O4U A;  4QQ1 A;  1GFQ A;  3G7G A;  3SYS A;  3UAQ A;  4AKM A;  1ZHX A;  3QRC A;  3LK3 B;  4FMS A;  4O3Z A;  2MHL A;  1QJP A;  2O4V A;  1ZHY A;  3DWN A;  1IZN A;  2QTK A;  2R4L A;  4LSH A;  1HXT A;  1E54 A;  2R4P A;  3AA1 A;  3DA3 A;  4AFK A;  1PRN A;  3SYB A;  3BRY A;  3NSG A;  3PF1 A;  4FT6 A;  4O3Y A;  2FGQ X;  2Y0H A;  3POX A;  3BRZ A;  3DZM A;  3O0E A;  5DL5 A;  2KZ7 A;  1GFM A;  2ZFG A;  2W81 C;  4RJW A;  3AAE B;  3LK4 1;  2J1N A;  4AYI D;  2MNH A;  3AA0 A;  4O3W A;  2XE5 A;  1OPF A;  4FRT A;  2GE4 A;  5ADX L;  3HOL A;  3JTY A;  4PR7 A;  2Y7S A;  2YPV A;  1HXX A;  4C4V B;  3A0B O;  1T1L A;  4LSI A;  2R4N A;  4D5U A;  5B66 O;  3QRA A;  4KR4 A;  1QJ9 A;  2POR A;  2ODJ A;  3JCU O;  3AA6 A;  3UU2 A;  1BXW A;  1S5L O;  2KXP B;  5PRN A;  4K3B A;  3POR A;  2KC0 A;  4GCS A;  4FQE A;  2J4U P;  2AXT O;  3LK2 A;  1MM4 A;  1Q9F A;  3AA7 B;  3FYX A;  4U9C A;  3SY7 A;  3T0S A;  4CTD A;  3T20 A;  3WI4 A;  4FZL A;  3EMN X;  4AKR B;  4D65 A;  4BUM X;  2XTQ A;  2IWW A;  1MPF A;  2M07 A;  2XTR A;  4UB8 O;  4AYN A;  2R88 A;  4GF4 A;  2XMX A;  4LSE A;  3POQ A;  4RLC A;  3VY9 X;  4AYM C;  2R89 A;  2M06 A;  4FSP A;  1THQ A;  4RJX A;  2XE2 A;  1GFN A;  1MM5 A;  5G26 A;  3VZT X;  3NJT A;  5DL7 A;  3VE1 A;  3PGS A;  3BS0 A;  3DA4 A;  3AA1 B;  2JMM A;  3A0H O;  5G38 A;  4Z3T A;  3DWO X;  3K19 A;  1QJ8 A;  4FUV A;  1BT9 A;  4GHB A;  5GTI O;  5AFU K;  2XG6 A;  3C5O A;  4G75 A;  2XE1 A;  4N75 A;  3WI5 A;  3AAE A;  4K3C A;  3VY8 X;  8PRN A;  3KVD D;  4F4B A;  4E1T A;  3AA0 B;  3LK4 2;  3AAA A;  5E79 O;  3SZD A;  5KAI O;  5KAF O;  4FRX A;  4O49 A;  2OMF A;  5IYU A;  3WU2 O;  3UPG A;  4LSF A;  4C00 A;  1BH3 A;  2W80 C;  3HWB A;  4C4V A;  3RBH A;  4O3X B;  5B5E O;  3GP6 A;  4KR8 A;  4FZM A;  1ORM A;  2WJR A;  3PQS A;  4E1S A;  4FOZ A;  3HW9 A;  4JCH A;  4AYE C;  3SY9 A;  2KXP A;  4IL6 O;  3VZW X;  3V8U A;  5DL6 A;  2K0L A;  1G90 A;  7PRN A;  3AA7 A;  5FVN A;  2Y0L A;  5T5F A;  3SZV A;  5D5D A;  3LK3 A;  4AZL A;  2XE3 A;  2IWV A;  1IZN B;  1GFP A;  4C69 X;  2FGR A;  1GFO A;  1YS5 A;  4G76 A;  3TZG A;  4FES A;  3PGU A;  2F1V A;  4O4X A;  5GV0 A;  1ZHW A;  2KZ7 B;  1P4T A;  3T24 A;  3POU A;  1HXU A;  2N2L A;  2JQY A;  5DL8 A;  5AFU L;  1OSM A;  4UB6 O;  1Q9G A;  6PRN A;  5H2F O;  4FSO A;  2N2M A;  4XNL A;  2KDY A;  4B61 A;  2WJQ A;  2LFU A;  1PHO A;  4RL9 A;  4GCP A;  1H6S 1;  2R4O A;  2F1T A;  2ZLD A;  3HOE A;  4KRA A;  4AUI A;  2WVP A;  3AA6 B;  3A2S X;  4AYD C;  4GCQ A;  4XNK A;  3VE2 A;  5JDP A;  2YNK A;  5ADX K;  2X27 X;  3AAA B;  3PQU A;  2LHF A;  5G39 A;  3PGR A;  3LK2 B;  5EE2 A;  2PRN A;  4RLB A;  1ZHT A;  5GTH O;  2F1C X;  4PJ0 O;  3KZI O;  4PUX A;  4AKR A;  4N74 A; 
#chains in the Genus database with same CATH homology
 2ERV A;  4JFB A;  4N59 A;  2K4T A;  4D64 A;  2Y0K A;  4FZN A;  2Y2X A;  1ZHZ A;  3PRN A;  4N58 A;  3VZU X;  4O4U A;  4QQ1 A;  1GFQ A;  3G7G A;  3SYS A;  3UAQ A;  4AKM A;  1ZHX A;  3QRC A;  3LK3 B;  4FMS A;  4O3Z A;  2MHL A;  1QJP A;  2O4V A;  1ZHY A;  1IZN A;  2QTK A;  4LSH A;  1HXT A;  1E54 A;  3AA1 A;  3DA3 A;  4AFK A;  1PRN A;  3SYB A;  3NSG A;  4FT6 A;  4O3Y A;  2FGQ X;  2Y0H A;  3POX A;  3O0E A;  5DL5 A;  2KZ7 A;  1GFM A;  2ZFG A;  2W81 C;  4RJW A;  3AAE B;  3LK4 1;  2J1N A;  4AYI D;  2MNH A;  3AA0 A;  4O3W A;  2XE5 A;  1OPF A;  4FRT A;  2GE4 A;  5ADX L;  3HOL A;  3JTY A;  2Y7S A;  2YPV A;  1HXX A;  4LSI A;  4D5U A;  3QRA A;  4KR4 A;  1QJ9 A;  2POR A;  2ODJ A;  3AA6 A;  3UU2 A;  1BXW A;  2KXP B;  5PRN A;  3POR A;  2KC0 A;  4GCS A;  2J4U P;  3LK2 A;  1MM4 A;  1Q9F A;  3AA7 B;  3FYX A;  4U9C A;  3SY7 A;  3T0S A;  3T20 A;  3WI4 A;  4FZL A;  3EMN X;  4AKR B;  4D65 A;  4BUM X;  2XTQ A;  1MPF A;  2M07 A;  2XTR A;  4AYN A;  4LSE A;  4GF4 A;  2XMX A;  3POQ A;  4RLC A;  3VY9 X;  4AYM C;  4FSP A;  2M06 A;  1THQ A;  4RJX A;  2XE2 A;  1GFN A;  1MM5 A;  5G26 A;  3VZT X;  3VE1 A;  5DL7 A;  3DA4 A;  3AA1 B;  2JMM A;  4Z3T A;  3K19 A;  1QJ8 A;  4FUV A;  1BT9 A;  4GHB A;  5AFU K;  2XG6 A;  3C5O A;  4G75 A;  2XE1 A;  3WI5 A;  8PRN A;  3AAE A;  3VY8 X;  3KVD D;  4F4B A;  4E1T A;  3AA0 B;  3LK4 2;  3AAA A;  3SZD A;  4FRX A;  4O49 A;  2OMF A;  5IYU A;  3UPG A;  4LSF A;  1BH3 A;  2W80 C;  3HWB A;  3RBH A;  4O3X B;  3GP6 A;  4KR8 A;  4FZM A;  1ORM A;  3PQS A;  4E1S A;  4FOZ A;  3HW9 A;  4JCH A;  4AYE C;  3SY9 A;  2KXP A;  3VZW X;  3V8U A;  5DL6 A;  2K0L A;  1G90 A;  7PRN A;  3AA7 A;  5FVN A;  2Y0L A;  5T5F A;  3SZV A;  5D5D A;  3LK3 A;  4AZL A;  2XE3 A;  1IZN B;  1GFP A;  4C69 X;  2FGR A;  1GFO A;  1YS5 A;  4G76 A;  3TZG A;  4FES A;  2F1V A;  4O4X A;  5GV0 A;  1ZHW A;  2KZ7 B;  1P4T A;  3T24 A;  3POU A;  1HXU A;  2N2L A;  5DL8 A;  5AFU L;  1OSM A;  1Q9G A;  6PRN A;  4FSO A;  2N2M A;  4XNL A;  2KDY A;  4B61 A;  2LFU A;  1PHO A;  4RL9 A;  4GCP A;  1H6S 1;  2ZLD A;  2F1T A;  3HOE A;  4KRA A;  4AUI A;  3AA6 B;  3A2S X;  4AYD C;  4GCQ A;  4XNK A;  3VE2 A;  5JDP A;  2YNK A;  5ADX K;  2X27 X;  3AAA B;  3PQU A;  2LHF A;  3LK2 B;  5EE2 A;  2PRN A;  4RLB A;  1ZHT A;  4PUX A;  4AKR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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