3WITA

Crystal structure of the c-terminal region of vgrg1 from e. coli o157 edl933
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
81
structure length
64
Chain Sequence
GTIAGSVHVIKEIMLAVEESKIALTPDGIQLQVGESTVIRLSKDGITIVGGSVFINGLEHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Putative Vgr protein
publication title Structure and properties of the C-terminal beta-helical domain of VgrG protein from Escherichia coli O157
pubmed doi rcsb
source organism Escherichia coli
molecule tags Structural protein
total genus 7
structure length 64
sequence length 81
ec nomenclature
pdb deposition date 2013-09-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.220.20 Mainly Beta Single Sheet Glycosyl hydrolase fold Glycosyl hydrolase fold 3witA00
3WITA 3PQHA
chains in the Genus database with same CATH superfamily
2GDVA 2GDUA 3WITA 4A0TA 4A0UA 1R7AA 5C8BB 3PQHA
chains in the Genus database with same CATH topology
4A0UA 3WITA 4A0TA 3PQHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WIT A;  3PQH A; 
#chains in the Genus database with same CATH topology
 2GDV A;  2GDU A;  3WIT A;  4A0T A;  4A0U A;  1R7A A;  5C8B B;  3PQH A; 
#chains in the Genus database with same CATH homology
 4A0U A;  3WIT A;  4A0T A;  3PQH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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