The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
215
|
sequence length |
701
|
structure length |
701
|
Chain Sequence |
SGGIERVFTDKARYNPGDAVSIRVQAKNGTGSSWSGAARLEIFHLENSVYTSSQSLSLTNGQSTTLTFTWTAPSTDFRGYFVRIDAGTLGQGATAIDVSSDFTKYPRYGYISEFESGETALESKAKVDQLAQDYHINAWQFYDWMWRHDKMIKRTGGSIDSTWLDLFNREISWSTLQNQIDAVHDVNGKAMAYAMIYASRENYSPLGISPTWGIYEDSSHTNQFDVDFGDGSTYLYMFDPQNPNWQNYIHAEYIDSINTAGFDGIHVAQMGQRSNVYDYNGNSIDLSTRFSPFLDQAKSVLSANNPARDNLTYNIVDGTVNGWAVNDVSKNADLDFLYSEIWYLSDSYNQLKNYIEQLRANGGNKAVVLAAYMNYADNAGTRYEAESASMTNVSTNTNHAGYTGSGFVDQFASTGDKVSFAINAPEAGDYSLVFRYGNNTGANSTLNLYVDGNFVQKLYFFNQSSWGTWKHDAWYQVPLTQGAHTVELRYESGNVGAVNLDSLTLGTFDEHSVRLADAMMSASGATHIELGDDNQMLPHEYYPNRSKTMRSSLKNAMKDHYNFITAYENLLFDSDVVPNDTGSQFVNLTGVSASGDGSANTVWYINKRTSDYNIVHLINLLGNDNQWRNTASQPSFQTNLPAKIYIGADETISDVYLASPDLSGGETQELAFTSGTDAGGKYVSFTVPELKYWNMIYMLEH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
molecule keywords |
Cycloisomaltooligosaccharide glucanotransferase
|
publication title |
Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
pubmed doi rcsb |
source organism |
Bacillus circulans
|
molecule tags |
Transferase
|
total genus |
215
|
structure length |
701
|
sequence length |
701
|
ec nomenclature |
ec
2.4.1.248: Cycloisomaltooligosaccharide glucanotransferase. |
pdb deposition date | 2013-12-10 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF13199 | Glyco_hydro_66 | Glycosyl hydrolase family 66 |
A | PF16990 | CBM_35 | Carbohydrate binding module (family 35) |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | ||
Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | ||
Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | ||
Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases |