3WP8A

Acinetobacter sp. tol 5 ataa c-terminal ylhead fused to gcn4 adaptors (chead)
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
317
structure length
317
Chain Sequence
KIEEILSKIYHIENEIARIKKLIAVITSNITEVVDGNGNKVNIIDQVVNTKPDNKNQDSLFLTYDKQGQETTDRLTIGQTVQKMNTDGIKFFHTNADTSKGDLGTTNDSSAGGLNSTAIGVNAIVANGADSSVALGHNTKVNGKQSIAIGSGAEALGNQSISIGTGNKVTGDHSGAIGDGTIVNGANSYSVGNNNQVLTDDTFVLGNNVTKTIAGSVVLGNGSAATTGAGEAGYALSVATNADKAAITKTTSSTGAVAVGDASSGIYRQITGVAAGSVDSDAVNVAQMKQIEDKIEEILSKIYHIENEIARIKKLIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Trimeric autotransporter adhesin
publication title Structural Basis for Toughness and Flexibility in the C-terminal Passenger Domain of an Acinetobacter Trimeric Autotransporter Adhesin
doi rcsb
source organism Acinetobacter
molecule tags Cell adhesion
total genus 109
structure length 317
sequence length 317
ec nomenclature
pdb deposition date 2014-01-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05658 YadA_head Head domain of trimeric autotransporter adhesin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 3wp8A02
3HBUP 5CVWA 3VI1A 2YO0A 1JIWP 2QUAA 2ZJ6A 3ULTA 1GO8P 1K7IA 5D7WA 1O0QA 3U1RA 2XQHA 1SATA 4I35A 2AGMA 1P9HA 1OM8A 1H71P 1SRPA 3A70A 1G9KA 2Z8ZA 1OM7A 2ZVDA 3A6ZA 3NTNA 2Z8XA 1AKLA 1O0TA 3HBVP 3WP8A 1SMPA 2YO1A 1AF0A 3LA9A 1KAPP 3LAAA 1GO7P 2QUBA 3HB2P 5CXLA 3HDAP 1K7QA 2ZJ7A 2ML2A 1OM6A 1K7GA 3S6LA 1OMJA
chains in the Genus database with same CATH superfamily
3HBUP 5CVWA 3VI1A 2YO0A 1JIWP 2QUAA 2ZJ6A 3ULTA 1GO8P 1K7IA 5D7WA 1O0QA 3U1RA 2XQHA 1SATA 4I35A 2AGMA 1P9HA 1OM8A 1H71P 1SRPA 3A70A 1G9KA 2Z8ZA 1OM7A 2ZVDA 3A6ZA 3NTNA 2Z8XA 1AKLA 1O0TA 3HBVP 3WP8A 1SMPA 2YO1A 1AF0A 3LA9A 1KAPP 3LAAA 1GO7P 2QUBA 4DT5A 3HB2P 5CXLA 3HDAP 1K7QA 2ZJ7A 2ML2A 1OM6A 1K7GA 3S6LA 1OMJA
chains in the Genus database with same CATH topology
3HBUP 5CVWA 3VI1A 2YO0A 1JIWP 2QUAA 2ZJ6A 3ULTA 1GO8P 1K7IA 5D7WA 1O0QA 3U1RA 2XQHA 1SATA 4I35A 2AGMA 1P9HA 1OM8A 1H71P 1SRPA 3A70A 1G9KA 2Z8ZA 1OM7A 2ZVDA 3A6ZA 3NTNA 2Z8XA 1AKLA 1O0TA 3HBVP 3WP8A 1SMPA 2YO1A 1AF0A 3LA9A 1KAPP 3LAAA 1GO7P 2QUBA 3HB2P 5CXLA 3HDAP 1K7QA 2ZJ7A 2ML2A 1OM6A 1K7GA 3S6LA 1OMJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HBU P;  5CVW A;  3VI1 A;  2YO0 A;  1JIW P;  2QUA A;  2ZJ6 A;  3ULT A;  1GO8 P;  1K7I A;  5D7W A;  1O0Q A;  3U1R A;  2XQH A;  1SAT A;  4I35 A;  2AGM A;  1P9H A;  1OM8 A;  1H71 P;  1SRP A;  3A70 A;  1G9K A;  2Z8Z A;  1OM7 A;  2ZVD A;  3A6Z A;  3NTN A;  2Z8X A;  1AKL A;  1O0T A;  3HBV P;  3WP8 A;  1SMP A;  2YO1 A;  1AF0 A;  3LA9 A;  1KAP P;  3LAA A;  1GO7 P;  2QUB A;  3HB2 P;  5CXL A;  3HDA P;  1K7Q A;  2ZJ7 A;  2ML2 A;  1OM6 A;  1K7G A;  3S6L A;  1OMJ A; 
#chains in the Genus database with same CATH topology
 3HBU P;  5CVW A;  3VI1 A;  2YO0 A;  1JIW P;  2QUA A;  2ZJ6 A;  3ULT A;  1GO8 P;  1K7I A;  5D7W A;  1O0Q A;  3U1R A;  2XQH A;  1SAT A;  4I35 A;  2AGM A;  1P9H A;  1OM8 A;  1H71 P;  1SRP A;  3A70 A;  1G9K A;  2Z8Z A;  1OM7 A;  2ZVD A;  3A6Z A;  3NTN A;  2Z8X A;  1AKL A;  1O0T A;  3HBV P;  3WP8 A;  1SMP A;  2YO1 A;  1AF0 A;  3LA9 A;  1KAP P;  3LAA A;  1GO7 P;  2QUB A;  4DT5 A;  3HB2 P;  5CXL A;  3HDA P;  1K7Q A;  2ZJ7 A;  2ML2 A;  1OM6 A;  1K7G A;  3S6L A;  1OMJ A; 
#chains in the Genus database with same CATH homology
 3HBU P;  5CVW A;  3VI1 A;  2YO0 A;  1JIW P;  2QUA A;  2ZJ6 A;  3ULT A;  1GO8 P;  1K7I A;  5D7W A;  1O0Q A;  3U1R A;  2XQH A;  1SAT A;  4I35 A;  2AGM A;  1P9H A;  1OM8 A;  1H71 P;  1SRP A;  3A70 A;  1G9K A;  2Z8Z A;  1OM7 A;  2ZVD A;  3A6Z A;  3NTN A;  2Z8X A;  1AKL A;  1O0T A;  3HBV P;  3WP8 A;  1SMP A;  2YO1 A;  1AF0 A;  3LA9 A;  1KAP P;  3LAA A;  1GO7 P;  2QUB A;  3HB2 P;  5CXL A;  3HDA P;  1K7Q A;  2ZJ7 A;  2ML2 A;  1OM6 A;  1K7G A;  3S6L A;  1OMJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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