The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
259
|
Knots found |
|
sequence length |
779
|
structure length |
747
|
Chain Sequence |
TLPPFLPCELQPHGLVNCNWLFLKSVPHFSAAAPRDNVTSLSLLSNRIHHLHDSDFAQLSNLQKLNLKWNCPPAGLSPMHFPCHMTIEPNTFLAVPTLEELNLSYNGITTVPALPSSLVSLILSRTNILQLDPTSLTGLHALRFLYMDGNCYYKNPCGRALEVAPGALLGLGNLTHLSLKYNNLTTVPRSLPPSLEYLLLSYNHIVTLAPEDLANLTALRVLDVGGNCRRCDHARNPCVECPHKFPQLHSDTFSHLSRLEGLVLKDSSLYQLNPRWFRGLGNLTVLDLSENFLYDCITKTKAFQGLAQLRRLNLSFNYHKKVSFAHLTLAPSFGSLLSLQELDMHGIFFRSLSQKTLQPLARLPMLQRLYLQMNFINQAQLGIFKDFPGLRYIDLSDNRISGAVEEDFMPSCKNLSFTLDLSRNNLVTVQPEMFAQLSRLQCLRLSHNSISQAVNGSQFVPLTSLQVLDLSHNKLDLYHGRSFTELPRLEALDLSYNSQPFSMRGVGHNLSFVAQLPTLRYLSLAHNGIHSRVSQQLCSTSLWALDFSGNSLSQMWAEGDLYLRFFQGLRSLIRLDLSQNRLHTLLPCTLGNLPKSLQLLRLRNNYLAFFNWSSLTLLPNLETLDLAGNQLKALSNGSLPSGTQLQRLDVSRNSIIFVVPGFFALATRLRELNLSANALRTVEPSWFGFLAGSLEVLDVSANPLHCACAAFVDFLLQVQAAVPGLPSRVKCGSPGQLQGRSIFAQDL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9
pubmed doi rcsb |
| molecule keywords |
Toll-like receptor 9
|
| molecule tags |
Dna binding protein/dna
|
| source organism |
Equus caballus
|
| total genus |
259
|
| structure length |
747
|
| sequence length |
779
|
| chains with identical sequence |
B
|
| other databases |
 KnotProt 2.0: Artifct K +31
|
| ec nomenclature | |
| pdb deposition date | 2014-01-11 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF13516 | LRR_6 | Leucine Rich repeat |
| A | PF13855 | LRR_8 | Leucine rich repeat |
| A | PF18837 | LRR_12 | Leucine-rich repeat |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor |
#chains in the Genus database with same CATH superfamily 4IM6 A; 3RW6 A; 4RCW A; 1M9S A; 4L3F A; 2WFH A; 4J0M A; 3WPI A; 2WQV A; 2O6S A; 1OOK G; 4Q3G A; 1GWB A; 2P1O B; 2OMY A; 4R6A A; 4BSS A; 5AWC A; 1DCE A; 3RGZ A; 2BNH A; 3RW7 A; 4QC0 A; 5IJB A; 5HZL B; 4R5C A; 3W3J A; 3GOZ A; 1G9U A; 1XKU A; 2Z64 A; 4CIL A; 2Z82 A; 4Z8G A; 3RFJ A; 3ULV A; 2Z81 A; 4QXE A; 3RFE A; 2OMU A; 4M7E C; 2O6R A; 2UZY A; 1QYY A; 3WPD A; 5IJC A; 4U08 A; 1OTN A; 4U09 A; 5GMH A; 2Z7X A; 4NKH A; 4Q3I A; 1A9N A; 3RIZ A; 3OGM B; 1FS2 A; 3CIY A; 4LXR A; 2IFG A; 4R07 A; 4CNC A; 4BSU A; 5B0N A; 4LSA A; 3WPH A; 4CNM A; 5GMF A; 4R58 A; 1A4Y A; 2P1Q B; 2V9S A; 1O6S A; 4BSR A; 4UFR A; 3DZE A; 2JE0 A; 3WPB A; 4I6J B; 1D0B A; 1H6T A; 5D3I A; 1XEU A; 2P1N B; 1SQ0 B; 1FQV A; 4U7L A; 3VQ1 A; 5AWA A; 1K5G C; 2JE1 A; 3WPC A; 4FMZ A; 3E4G A; 3FXI A; 4CC4 A; 2Z65 A; 3ZYN A; 5A5C A; 4RWT C; 4M7E A; 5FTT B; 4PER A; 3REZ A; 2CA6 A; 4V2D A; 4YEB B; 1FO1 A; 2RR6 A; 4QBZ A; 2Q4G W; 4PEQ B; 4Z64 C; 4R6F A; 4LI2 A; 2JQD A; 4XOS A; 2BEX A; 1ZIW A; 4EZG A; 1FT8 A; 2OMZ A; 3W3K A; 1P8T A; 1XWD C; 4R0A A; 4Z61 C; 3W3M A; 3ULU A; 5AWB A; 4FS7 A; 2O6Q A; 4U06 A; 3UL9 A; 4Z79 A; 2XOT A; 3A79 B; 3G3A A; 4C2A B; 4R08 A; 4RCA B; 4Z94 G; 4LSC A; 1LTX A; 3TSR E; 4MQW X; 4LSX C; 4B8C D; 2XWT C; 3G04 C; 4ARR A; 2FT3 A; 4C2B B; 3W3G A; 2Z62 A; 1P9A G; 3W3L A; 3WPE A; 5IYX C; 4Y61 B; 2OMX A; 3WPF A; 1H6U A; 3OGK B; 2WQX A; 5CMN A; 4LI1 A; 4LXS A; 5GMG A; 4L3A A; 1WWL A; 5CMP A; 4FCG A; 5AWD A; 4KXF B; 2ID5 A; 2Z63 A; 3ZYJ A; 3RJ0 A; 1KOO A; 2V9T B; 4PQ8 A; 3OJA A; 5GQR K; 4FDW A; 5IJD A; 2ASS B; 4V2C A; 5GS2 B; 4CP6 A; 3PMH G; 3OGL B; 4R6J A; 5B0T A; 2V70 A; 1YRG A; 3CVR A; 3G39 A; 2UZX A; 4R6G A; 1P8V A; 3BZ5 A; 1XEC A; 1K5D C; 2Z66 A; 5GS0 A; 2P1M B; 5LFN A; 3C6P B; 4WYK A; 4MN8 B; 4XSQ A; 4H09 A; 4KNG A; 3O6N A; 3WPG A; 4GLP A; 2OMT A; 4WP6 A; 3UL8 A; 3M19 A; 1DS9 A; 2P1P B; 3RFS A; 4ECO A; 4G8A A; 3W3N A; 4LSX A; 3ZYO A; 1Z7X W; 1O6V A; 1O6T A; 4FHO A; 4AW4 A; 3C6N B; 3O53 A; 4OQT A; 3P72 A; 4ECN A; 1IO0 A; 1OGQ A; 1PGV A; 1XCD A; 2WQU A; 4CC4 C; 4GT6 A; 1OZN A; 3M18 A; 4Q62 A; 3WN4 A; 4FD0 A; 4P8S A; 4PSJ A; 3G3B A; 3C6O B; 3UL7 A; 4R5D A; 1U0N D; 2Y5Q A; 3UN9 A; 4HQ1 A; 2WQW A; 3G06 A; 2Z7X B; 4PKI G; 1M10 B; 1W8A A; 4K17 A; 3E3Z A; 1JL5 A; 5B4P A; 2R9U A; 4NKG A; 3ULA A; 2AST B; 3KJ4 A; 3ZYI A; 3CIG A; 3VQ2 A; 1M9L A; 4AY9 X; 5HDH A; 4R09 A; 4P91 A; 3E6J A; 3E2J A; 5AZ5 A; 4TZH A; 3SB4 A; 1OTM A; 4XGO A; 2ELL A; 4V2E A; 2RA8 A; 3OJA B; 4BV4 R; 4ARN A; 2A0Z A; 1DFJ I; 3JB9 j; 4J4L A; 4KT1 A; 1KOH A; 3RGX A; 2OMW A; 2OMV A; 1OTO A; 1M0Z A; #chains in the Genus database with same CATH topology 4IM6 A; 3RW6 A; 4RCW A; 1M9S A; 4L3F A; 2WFH A; 4J0M A; 3WPI A; 2WQV A; 2O6S A; 1OOK G; 4Q3G A; 1GWB A; 2P1O B; 2OMY A; 4R6A A; 4BSS A; 5AWC A; 1DCE A; 3RGZ A; 2BNH A; 3RW7 A; 4QC0 A; 5IJB A; 5HZL B; 4R5C A; 3W3J A; 3GOZ A; 1G9U A; 1XKU A; 2Z64 A; 4CIL A; 2Z82 A; 4Z8G A; 3RFJ A; 3ULV A; 2Z81 A; 4QXE A; 3RFE A; 2OMU A; 4M7E C; 2O6R A; 2UZY A; 1QYY A; 3WPD A; 5IJC A; 4U08 A; 1OTN A; 4U09 A; 5GMH A; 2Z7X A; 4NKH A; 4Q3I A; 1A9N A; 3RIZ A; 3OGM B; 1FS2 A; 3CIY A; 4LXR A; 2IFG A; 4R07 A; 4CNC A; 4BSU A; 5B0N A; 4LSA A; 3WPH A; 4CNM A; 5GMF A; 4R58 A; 1A4Y A; 2P1Q B; 2V9S A; 1O6S A; 4NZT M; 4BSR A; 4UFR A; 3DZE A; 2JE0 A; 3WPB A; 4I6J B; 1D0B A; 1H6T A; 5D3I A; 1XEU A; 2P1N B; 1SQ0 B; 1FQV A; 4U7L A; 3VQ1 A; 5AWA A; 1K5G C; 2JE1 A; 3WPC A; 4FMZ A; 3E4G A; 3FXI A; 4CC4 A; 2Z65 A; 3ZYN A; 5A5C A; 4RWT C; 4M7E A; 5FTT B; 4PER A; 3REZ A; 2CA6 A; 4V2D A; 4YEB B; 1FO1 A; 2RR6 A; 4QBZ A; 2Q4G W; 4PEQ B; 4Z64 C; 4R6F A; 4LI2 A; 2JQD A; 4XOS A; 2BEX A; 1ZIW A; 4EZG A; 1FT8 A; 2OMZ A; 3W3K A; 1P8T A; 1XWD C; 4R0A A; 4Z61 C; 3W3M A; 3ULU A; 5AWB A; 4FS7 A; 2O6Q A; 4U06 A; 3UL9 A; 4Z79 A; 2XOT A; 3A79 B; 3G3A A; 4C2A B; 4R08 A; 4RCA B; 4Z94 G; 4LSC A; 1LTX A; 3TSR E; 4MQW X; 4LSX C; 4B8C D; 2XWT C; 3G04 C; 4ARR A; 2FT3 A; 4C2B B; 3W3G A; 2Z62 A; 1P9A G; 3W3L A; 3WPE A; 5IYX C; 4Y61 B; 2OMX A; 3WPF A; 1H6U A; 3OGK B; 2WQX A; 5CMN A; 4LI1 A; 4LXS A; 5GMG A; 4L3A A; 1WWL A; 5CMP A; 4FCG A; 5AWD A; 4KXF B; 2ID5 A; 2Z63 A; 3ZYJ A; 3RJ0 A; 1KOO A; 2V9T B; 4PQ8 A; 3OJA A; 5GQR K; 4FDW A; 5IJD A; 2ASS B; 4V2C A; 5GS2 B; 4CP6 A; 3PMH G; 3OGL B; 4R6J A; 5B0T A; 2V70 A; 1YRG A; 3CVR A; 3G39 A; 2UZX A; 4R6G A; 1P8V A; 3BZ5 A; 1XEC A; 1K5D C; 2Z66 A; 5GS0 A; 2P1M B; 5LFN A; 3C6P B; 4WYK A; 4MN8 B; 4XSQ A; 4H09 A; 4KNG A; 3O6N A; 3WPG A; 4GLP A; 2OMT A; 4WP6 A; 3UL8 A; 3M19 A; 1DS9 A; 2P1P B; 3RFS A; 4ECO A; 4G8A A; 3W3N A; 4LSX A; 3ZYO A; 1Z7X W; 1O6V A; 1O6T A; 4FHO A; 4AW4 A; 3C6N B; 3O53 A; 4OQT A; 3P72 A; 4ECN A; 1IO0 A; 1OGQ A; 1PGV A; 1XCD A; 2WQU A; 4CC4 C; 4GT6 A; 1OZN A; 3M18 A; 4NZR M; 4Q62 A; 3WN4 A; 4FD0 A; 4P8S A; 4PSJ A; 3G3B A; 3C6O B; 3UL7 A; 4R5D A; 1U0N D; 2Y5Q A; 3UN9 A; 4HQ1 A; 2WQW A; 3G06 A; 2Z7X B; 4PKI G; 1M10 B; 1W8A A; 4K17 A; 3E3Z A; 1JL5 A; 5B4P A; 2R9U A; 4NKG A; 3ULA A; 2AST B; 3KJ4 A; 3ZYI A; 3CIG A; 3VQ2 A; 1M9L A; 4AY9 X; 5HDH A; 4R09 A; 4P91 A; 3E6J A; 3E2J A; 5AZ5 A; 4TZH A; 3SB4 A; 1OTM A; 4XGO A; 2ELL A; 4V2E A; 2RA8 A; 3OJA B; 4BV4 R; 4ARN A; 2A0Z A; 1DFJ I; 3JB9 j; 4J4L A; 4KT1 A; 1KOH A; 3RGX A; 2OMW A; 2OMV A; 1OTO A; 1M0Z A; #chains in the Genus database with same CATH homology 4IM6 A; 3RW6 A; 4RCW A; 1M9S A; 4L3F A; 2WFH A; 4J0M A; 3WPI A; 2WQV A; 2O6S A; 1OOK G; 4Q3G A; 1GWB A; 2P1O B; 2OMY A; 4R6A A; 4BSS A; 5AWC A; 1DCE A; 3RGZ A; 2BNH A; 3RW7 A; 4QC0 A; 5IJB A; 5HZL B; 4R5C A; 3W3J A; 3GOZ A; 1G9U A; 1XKU A; 2Z64 A; 4CIL A; 2Z82 A; 4Z8G A; 3RFJ A; 3ULV A; 2Z81 A; 4QXE A; 3RFE A; 2OMU A; 4M7E C; 2O6R A; 2UZY A; 1QYY A; 3WPD A; 5IJC A; 4U08 A; 1OTN A; 4U09 A; 5GMH A; 2Z7X A; 4NKH A; 4Q3I A; 1A9N A; 3RIZ A; 3OGM B; 1FS2 A; 3CIY A; 4LXR A; 2IFG A; 4R07 A; 4CNC A; 4BSU A; 5B0N A; 4LSA A; 3WPH A; 4CNM A; 5GMF A; 4R58 A; 1A4Y A; 2P1Q B; 2V9S A; 1O6S A; 4BSR A; 4UFR A; 3DZE A; 2JE0 A; 3WPB A; 4I6J B; 1D0B A; 1H6T A; 5D3I A; 1XEU A; 2P1N B; 1SQ0 B; 1FQV A; 4U7L A; 3VQ1 A; 5AWA A; 1K5G C; 2JE1 A; 3WPC A; 4FMZ A; 3E4G A; 3FXI A; 4CC4 A; 2Z65 A; 3ZYN A; 5A5C A; 4RWT C; 4M7E A; 5FTT B; 4PER A; 3REZ A; 2CA6 A; 4V2D A; 4YEB B; 1FO1 A; 2RR6 A; 4QBZ A; 2Q4G W; 4PEQ B; 4Z64 C; 4R6F A; 4LI2 A; 2JQD A; 4XOS A; 2BEX A; 1ZIW A; 4EZG A; 1FT8 A; 2OMZ A; 3W3K A; 1P8T A; 1XWD C; 4R0A A; 4Z61 C; 3W3M A; 3ULU A; 5AWB A; 4FS7 A; 2O6Q A; 4U06 A; 3UL9 A; 4Z79 A; 2XOT A; 3A79 B; 3G3A A; 4C2A B; 4R08 A; 4RCA B; 4Z94 G; 4LSC A; 1LTX A; 3TSR E; 4MQW X; 4LSX C; 4B8C D; 2XWT C; 3G04 C; 4ARR A; 2FT3 A; 4C2B B; 3W3G A; 2Z62 A; 1P9A G; 3W3L A; 3WPE A; 5IYX C; 4Y61 B; 2OMX A; 3WPF A; 1H6U A; 3OGK B; 2WQX A; 5CMN A; 4LI1 A; 4LXS A; 5GMG A; 4L3A A; 1WWL A; 5CMP A; 4FCG A; 5AWD A; 4KXF B; 2ID5 A; 2Z63 A; 3ZYJ A; 3RJ0 A; 1KOO A; 2V9T B; 4PQ8 A; 3OJA A; 5GQR K; 4FDW A; 5IJD A; 2ASS B; 4V2C A; 5GS2 B; 4CP6 A; 3PMH G; 3OGL B; 4R6J A; 5B0T A; 2V70 A; 1YRG A; 3CVR A; 3G39 A; 2UZX A; 4R6G A; 1P8V A; 3BZ5 A; 1XEC A; 1K5D C; 2Z66 A; 5GS0 A; 2P1M B; 5LFN A; 3C6P B; 4WYK A; 4MN8 B; 4XSQ A; 4H09 A; 4KNG A; 3O6N A; 3WPG A; 4GLP A; 2OMT A; 4WP6 A; 3UL8 A; 3M19 A; 1DS9 A; 2P1P B; 3RFS A; 4ECO A; 4G8A A; 3W3N A; 4LSX A; 3ZYO A; 1Z7X W; 1O6V A; 1O6T A; 4FHO A; 4AW4 A; 3C6N B; 3O53 A; 4OQT A; 3P72 A; 4ECN A; 1IO0 A; 1OGQ A; 1PGV A; 1XCD A; 2WQU A; 4CC4 C; 4GT6 A; 1OZN A; 3M18 A; 4Q62 A; 3WN4 A; 4FD0 A; 4P8S A; 4PSJ A; 3G3B A; 3C6O B; 3UL7 A; 4R5D A; 1U0N D; 2Y5Q A; 3UN9 A; 4HQ1 A; 2WQW A; 3G06 A; 2Z7X B; 4PKI G; 1M10 B; 1W8A A; 4K17 A; 3E3Z A; 1JL5 A; 5B4P A; 2R9U A; 4NKG A; 3ULA A; 2AST B; 3KJ4 A; 3ZYI A; 3CIG A; 3VQ2 A; 1M9L A; 4AY9 X; 5HDH A; 4R09 A; 4P91 A; 3E6J A; 3E2J A; 5AZ5 A; 4TZH A; 3SB4 A; 1OTM A; 4XGO A; 2ELL A; 4V2E A; 2RA8 A; 3OJA B; 4BV4 R; 4ARN A; 2A0Z A; 1DFJ I; 3JB9 j; 4J4L A; 4KT1 A; 1KOH A; 3RGX A; 2OMW A; 2OMV A; 1OTO A; 1M0Z A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
