3WSCA

Crystal structure of alginate-binding protein algp7
Total Genus 100
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
100
sequence length
251
structure length
251
Chain Sequence
VAPLDLVQPISDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMSYERIEPIAELFSDLDASIDSRADDHEKAEKDPAFFGFHRIEYGLFAQNSAKGLAPVADKLMADVLELQKRIRGLTFPPEKVVGGAAVLMEEVAATKISGEEDRYSHTDLWDFQANFEGAKKIVDLFRPLVVKDNRAFADKVDANFDTVFKTLAKYRTADGGFELYGKLSERDRKVLAGRVNTLAEDLSKMRGLLGLDL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Alginate-binding protein
molecule keywords Alginate-binding protein
publication title Structural insights into alginate binding by bacterial cell-surface protein
pubmed doi rcsb
source organism Sphingomonas
total genus 100
structure length 251
sequence length 251
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09375 Peptidase_M75 Imelysin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1420.20 Mainly Alpha Up-down Bundle A middle domain of Talin 1 A middle domain of Talin 1 3wscA00
3WSCA 3PF0A 4ECGA 4BGOA 3AT7A
chains in the Genus database with same CATH superfamily
4F7GB 5JDNA 3FYQA 5HXEA 4ECGA 5HWXA 5HXRA 3V5UA 2X0CA 5HXHA 2KBBA 5HXCA 4BGOA 5HXSA 3V5SA 5JDQA 5HYAA 3VJZA 3WURA 1SJ8A 2MTCA 3WSCA 2L10A 2KVPA 4ONRA 5T1DA 1SJ7A 3PHF1 5HWYA 2L7NA 5JDFA 4W8PA 2KGXA 3DYJA 3M1CA 3PF0A 5JDLA 2XQYA 5JDMA 3AT7A 5JDHA 5FZTA 5JDGA 2LQUA 3AY5A
chains in the Genus database with same CATH topology
5JDNA 5HXEA 4ECGA 5HWXA 5HXRA 3V5UA 5HXHA 5HXCA 4BGOA 5HXSA 3V5SA 5JDQA 5HYAA 3VJZA 3WURA 2MTCA 3WSCA 4ONRA 5T1DA 5HWYA 5JDFA 3PHF1 3M1CA 3PF0A 5JDMA 2XQYA 3AT7A 5JDHA 5JDGA 2LQUA 5JDLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WSC A;  3PF0 A;  4ECG A;  4BGO A;  3AT7 A; 
#chains in the Genus database with same CATH topology
 4F7G B;  5JDN A;  3FYQ A;  5HXE A;  4ECG A;  5HWX A;  5HXR A;  3V5U A;  2X0C A;  5HXH A;  2KBB A;  5HXC A;  4BGO A;  5HXS A;  3V5S A;  5JDQ A;  5HYA A;  3VJZ A;  3WUR A;  1SJ8 A;  2MTC A;  3WSC A;  2L10 A;  2KVP A;  4ONR A;  5T1D A;  1SJ7 A;  3PHF 1;  5HWY A;  2L7N A;  5JDF A;  4W8P A;  2KGX A;  3DYJ A;  3M1C A;  3PF0 A;  5JDL A;  2XQY A;  5JDM A;  3AT7 A;  5JDH A;  5FZT A;  5JDG A;  2LQU A;  3AY5 A; 
#chains in the Genus database with same CATH homology
 5JDN A;  5HXE A;  4ECG A;  5HWX A;  5HXR A;  3V5U A;  5HXH A;  5HXC A;  4BGO A;  5HXS A;  3V5S A;  5JDQ A;  5HYA A;  3VJZ A;  3WUR A;  2MTC A;  3WSC A;  4ONR A;  5T1D A;  5HWY A;  5JDF A;  3PHF 1;  3M1C A;  3PF0 A;  5JDM A;  2XQY A;  3AT7 A;  5JDH A;  5JDG A;  2LQU A;  5JDL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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