3WSGA

Reduced hcgd from methanocaldococcus jannaschii with citrate
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
248
structure length
248
Chain Sequence
EVVNMKAKEIIEFIETFAPKDLAIEGDNIGLQVGDNLDKEIKKLGIALDPSLSVIKKAEKEGVDFLFTHHPLLKDPIRNFTGVIYKKLKILMENDIILYSAHTNLDICKNGLNDALAELYNLENPKPLYDNGLGRVGIFKGSFEEFLEITKKYIHKNPIVVKSKEVDDNFKLAVLSGYGLSQSSIKYVAEKADVYLSGDLTHHSKILAEELGLVVVDATHYSTEVFGLKKFKEFLSSNLDLEIISLDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Putative GTP cyclohydrolase 1 type 2
publication title A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
total genus 89
structure length 248
sequence length 248
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2014-03-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1390.30 Alpha Beta 3-Layer(aba) Sandwich Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 NIF3 (NGG1p interacting factor 3)-like 3wsgA01
3.40.1390.30 Alpha Beta 3-Layer(aba) Sandwich Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 NIF3 (NGG1p interacting factor 3)-like 3wsgA02
3WSGA 3WSIA 3WSDA 3WSFA 3WSEA 1NMOA 3WSHA 4IWMA 2YYBA 1NMPA 4IWGA 2FYWA
chains in the Genus database with same CATH superfamily
3WSEA 3WSFA 2IU9A 4IHGA 1KO7A 4C13A 4ZIYA 3EEQA 4QDIA 2IU8A 4BUBA 3ZM5A 4IWMA 1NMPA 3WSHA 4CVLA 3ZL8A 3WSGA 4E75A 2XJAA 3PMOA 3L2BA 4CVMA 4QF5A 3EH0A 4IWGA 4E79A 3WSIA 3WSDA 4IHFA 3ZM6A 2AM1A 2YYBA 2FYWA 2WTZA 1KNXA 4CVKA 2IUAA 2IOJA 3L31A 1E8CA 1NMOA 4C12A 1GG4A 2AM2A 4IHHA
chains in the Genus database with same CATH topology
3WSGA 3WSIA 3WSDA 3WSFA 3WSEA 1NMOA 3WSHA 4IWMA 2YYBA 1NMPA 4IWGA 2FYWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WSG A;  3WSI A;  3WSD A;  3WSF A;  3WSE A;  1NMO A;  3WSH A;  4IWM A;  2YYB A;  1NMP A;  4IWG A;  2FYW A; 
#chains in the Genus database with same CATH topology
 3WSE A;  3WSF A;  2IU9 A;  4IHG A;  1KO7 A;  4C13 A;  4ZIY A;  3EEQ A;  4QDI A;  2IU8 A;  4BUB A;  3ZM5 A;  4IWM A;  1NMP A;  3WSH A;  4CVL A;  3ZL8 A;  3WSG A;  4E75 A;  2XJA A;  3PMO A;  3L2B A;  4CVM A;  4QF5 A;  3EH0 A;  4IWG A;  4E79 A;  3WSI A;  3WSD A;  4IHF A;  3ZM6 A;  2AM1 A;  2YYB A;  2FYW A;  2WTZ A;  1KNX A;  4CVK A;  2IUA A;  2IOJ A;  3L31 A;  1E8C A;  1NMO A;  4C12 A;  1GG4 A;  2AM2 A;  4IHH A; 
#chains in the Genus database with same CATH homology
 3WSG A;  3WSI A;  3WSD A;  3WSF A;  3WSE A;  1NMO A;  3WSH A;  4IWM A;  2YYB A;  1NMP A;  4IWG A;  2FYW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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