3WTMA

Crystal structure of lymnaea stagnalis acetylcholine-binding protein q55r mutant complexed with nitromethylene analogue of imidacloprid
Total Genus 48
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
207
structure length
207
Chain Sequence
b'ADRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQRTTWSDRTLAWDSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRS'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Studies on an acetylcholine binding protein identify a basic residue in loop G on the beta 1 strand as a new structural determinant of neonicotinoid actions
pubmed doi rcsb
molecule keywords Acetylcholine-binding protein
source organism Lymnaea stagnalis
molecule tags Signaling protein
total genus 48
structure length 207
sequence length 207
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2014-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3wtmA00
1UX2A 2BG9A 4COFA 5J5FA 3PMZA 5TVCA 5AFHA 2BG9E 4NZBA 2BYPA 5IUXA 4UXUA 3SH1A 3ZKRA 3UU5A 2Y57A 4QACA 1I9BA 4ZR6A 2Y58A 5CFBA 4XHEA 3C79A 4BFQA 5HEGA 3EI0A 3RQUA 5HCMA 3ZDHA 5J5HA 4HQPA 3RI5A 2BR8A 2WN9A 3WTKA 5HEOA 5HEHA 5CO5A 5J5IA 3JAEA 5SYOA 5BP0A 3UUBA 2BYRA 3WTOA 3ZDGA 3P4WA 4IREA 4QH5A 3TLTA 4A98A 4LMKA 2XQAA 4TWFA 5AFNA 5HEJA 4TNWA 2XYTA 4ILAA 2YMDA 4PIRA 4AFGA 4ZRUA 2W8GA 5AFMB 4Z91A 3WTJA 3RIAA 5J5GA 4ZZBA 2WZYA 2XQ9A 4D01A 2QC1B 4ZK1A 3P50A 3U8JA 4EZ1A 2XQ6A 3UU8A 2ZJUA 5BW2A 3UQ7A 2X00A 5KE4A 2VL0A 5LXBA 4ILCA 3U8NA 4B5DA 4NPPA 3UU3A 5AFMA 2YOEA 5AFJA 5J0ZA 4AFTA 3WTIA 5AINA 2X00D 5HCJA 4IL9A 5L47A 5JMEA 2Y54A 2BR7A 3RHWA 4Z90A 4A97A 3GUAA 5HEUA 2XNTA 5L4EA 2W8FA 2BYNA 3UU4A 3SQ6A 4ZJTA 2Y7YA 4WV9A 2ZJVA 5FJVA 1UV6A 2XQ8A 3JADA 2XZ5A 4QH1A 5BRXA 4HFIA 4FRRA 4ZZCA 2XNVA 3U8LA 4UY2A 3RIFA 4ALXA 4UM3S 2BJ0A 5L4HA 3WTHA 1UW6A 5LG3A 3WTMA 2PGZA 3WTNA 3EHZA 3IGQA 4TWDA 4QH4A 3UU6A 3JAFA 3TLUA 4QAAA 3TLWA 3SQ9A 4HFEA 4HFHA 2XNUA 4ZJSA 3RQWA 4UM3P 2XZ6A 2WNJA 3U8MA 3U8KA 4TNVA 4BQTA 3WIPA 3SIOA 3TLVA 2XYSA 2XQ5A 2XQ4A 4TWHA 2C9TA 2XQ3A 4QABA 4UM1A 4UM3A 3TLSA 3T4MA 2WNLA 5KZUA 3WTLA 3EAMA 5AFKA 2BG9B 2BYQA 2YN6A 4XK9A 4HFDA 3LSVA 2UZ6A 2WNCA 2XQ7A 4HFCA 3C84A 4AFHA 2Y56A 4HFBA 3PEOA 5AFLA 2YKSA 4ZK4A 2YMEA 4DBMA 4ILBA 4F8HA 3UQ4A 4LMLA 2BG9C 4X5TA 2PH9A 4IL4A 2BYSA 4LMJA
chains in the Genus database with same CATH superfamily
1UX2A 2BG9A 4COFA 5J5FA 3PMZA 5TVCA 5AFHA 2BG9E 4NZBA 2BYPA 5IUXA 4UXUA 3SH1A 3ZKRA 3UU5A 2Y57A 4QACA 1I9BA 4ZR6A 2Y58A 5CFBA 4XHEA 3C79A 4BFQA 5HEGA 3EI0A 3RQUA 5HCMA 3ZDHA 5J5HA 4HQPA 3RI5A 2BR8A 2WN9A 3WTKA 5HEOA 5HEHA 5CO5A 5J5IA 3JAEA 5SYOA 5BP0A 3UUBA 2BYRA 3WTOA 3ZDGA 3P4WA 4IREA 4QH5A 3TLTA 4A98A 4LMKA 2XQAA 4TWFA 5AFNA 5HEJA 4TNWA 2XYTA 4ILAA 2YMDA 4PIRA 4AFGA 4ZRUA 2W8GA 5AFMB 4Z91A 3WTJA 3RIAA 5J5GA 4ZZBA 2WZYA 2XQ9A 4D01A 2QC1B 4ZK1A 3P50A 3U8JA 4EZ1A 2XQ6A 3UU8A 2ZJUA 5BW2A 3UQ7A 2X00A 5KE4A 2VL0A 5LXBA 4ILCA 3U8NA 4B5DA 4NPPA 3UU3A 5AFMA 2YOEA 5AFJA 5J0ZA 4AFTA 3WTIA 5AINA 2X00D 5HCJA 4IL9A 5L47A 5JMEA 2Y54A 2BR7A 3RHWA 4Z90A 4A97A 3GUAA 5HEUA 2XNTA 5L4EA 2W8FA 2BYNA 3UU4A 3SQ6A 4ZJTA 2Y7YA 4WV9A 2ZJVA 5FJVA 1UV6A 2XQ8A 3JADA 2XZ5A 4QH1A 5BRXA 4HFIA 4FRRA 4ZZCA 2XNVA 3U8LA 4UY2A 3RIFA 4ALXA 4UM3S 2BJ0A 5L4HA 3WTHA 1UW6A 5LG3A 3WTMA 2PGZA 3WTNA 3EHZA 3IGQA 4TWDA 4QH4A 3UU6A 3JAFA 3TLUA 4QAAA 3TLWA 3SQ9A 4HFEA 4HFHA 2XNUA 4ZJSA 3RQWA 4UM3P 2XZ6A 2WNJA 3U8MA 3U8KA 4TNVA 4BQTA 3WIPA 3SIOA 3TLVA 2XYSA 2XQ5A 2XQ4A 4TWHA 2C9TA 2XQ3A 4QABA 4UM1A 4UM3A 3TLSA 3T4MA 2WNLA 5KZUA 3WTLA 3EAMA 5AFKA 2BG9B 2BYQA 2YN6A 4XK9A 4HFDA 3LSVA 2UZ6A 2WNCA 2XQ7A 4HFCA 3C84A 4AFHA 2Y56A 4HFBA 3PEOA 5AFLA 2YKSA 4ZK4A 2YMEA 4DBMA 4ILBA 4F8HA 3UQ4A 4LMLA 2BG9C 4X5TA 2PH9A 4IL4A 2BYSA 4LMJA
chains in the Genus database with same CATH topology
1UX2A 2BG9A 4COFA 5J5FA 3PMZA 5TVCA 5AFHA 2BG9E 4NZBA 2BYPA 5IUXA 4UXUA 3SH1A 3ZKRA 3UU5A 2Y57A 4QACA 1I9BA 4ZR6A 2Y58A 5CFBA 4XHEA 3C79A 4BFQA 5HEGA 3EI0A 3RQUA 5HCMA 3ZDHA 5J5HA 4HQPA 3RI5A 2BR8A 2WN9A 3WTKA 5HEOA 5HEHA 5CO5A 5J5IA 3JAEA 5SYOA 5BP0A 3UUBA 2BYRA 3WTOA 3ZDGA 3P4WA 4IREA 4QH5A 3TLTA 4A98A 4LMKA 2XQAA 4TWFA 5AFNA 5HEJA 4TNWA 2XYTA 4ILAA 2YMDA 4PIRA 4AFGA 4ZRUA 2W8GA 5AFMB 4Z91A 3WTJA 3RIAA 5J5GA 4ZZBA 2WZYA 2XQ9A 4D01A 2QC1B 4ZK1A 3P50A 3U8JA 4EZ1A 2XQ6A 3UU8A 2ZJUA 5BW2A 3UQ7A 2X00A 5KE4A 2VL0A 5LXBA 4ILCA 3U8NA 4B5DA 4NPPA 3UU3A 5AFMA 2YOEA 5AFJA 5J0ZA 4AFTA 3WTIA 5AINA 2X00D 5HCJA 4IL9A 5L47A 5JMEA 2Y54A 2BR7A 3RHWA 4Z90A 4A97A 3GUAA 5HEUA 2XNTA 5L4EA 2W8FA 2BYNA 3UU4A 3SQ6A 4ZJTA 2Y7YA 4WV9A 2ZJVA 5FJVA 1UV6A 2XQ8A 3JADA 2XZ5A 4QH1A 5BRXA 4HFIA 4FRRA 4ZZCA 2XNVA 3U8LA 4UY2A 3RIFA 4ALXA 4UM3S 2BJ0A 5L4HA 3WTHA 1UW6A 5LG3A 3WTMA 2PGZA 3WTNA 3EHZA 3IGQA 4TWDA 4QH4A 3UU6A 3JAFA 3TLUA 4QAAA 3TLWA 3SQ9A 4HFEA 4HFHA 2XNUA 4ZJSA 3RQWA 4UM3P 2XZ6A 2WNJA 3U8MA 3U8KA 4TNVA 4BQTA 3WIPA 3SIOA 3TLVA 2XYSA 2XQ5A 2XQ4A 4TWHA 2C9TA 2XQ3A 4QABA 4UM1A 4UM3A 3TLSA 3T4MA 2WNLA 5KZUA 3WTLA 3EAMA 5AFKA 2BG9B 2BYQA 2YN6A 4XK9A 4HFDA 3LSVA 2UZ6A 2WNCA 2XQ7A 4HFCA 3C84A 4AFHA 2Y56A 4HFBA 3PEOA 5AFLA 2YKSA 4ZK4A 2YMEA 4DBMA 4ILBA 4F8HA 3UQ4A 4LMLA 2BG9C 4X5TA 2PH9A 4IL4A 2BYSA 4LMJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UX2 A;  2BG9 A;  4COF A;  5J5F A;  3PMZ A;  5TVC A;  5AFH A;  2BG9 E;  4NZB A;  2BYP A;  5IUX A;  4UXU A;  3SH1 A;  3ZKR A;  3UU5 A;  2Y57 A;  4QAC A;  1I9B A;  4ZR6 A;  2Y58 A;  5CFB A;  4XHE A;  3C79 A;  4BFQ A;  5HEG A;  3EI0 A;  3RQU A;  5HCM A;  3ZDH A;  5J5H A;  4HQP A;  3RI5 A;  2BR8 A;  2WN9 A;  3WTK A;  5HEO A;  5HEH A;  5CO5 A;  5J5I A;  3JAE A;  5SYO A;  5BP0 A;  3UUB A;  2BYR A;  3WTO A;  3ZDG A;  3P4W A;  4IRE A;  4QH5 A;  3TLT A;  4A98 A;  4LMK A;  2XQA A;  4TWF A;  5AFN A;  5HEJ A;  4TNW A;  2XYT A;  4ILA A;  2YMD A;  4PIR A;  4AFG A;  4ZRU A;  2W8G A;  5AFM B;  4Z91 A;  3WTJ A;  3RIA A;  5J5G A;  4ZZB A;  2WZY A;  2XQ9 A;  4D01 A;  2QC1 B;  4ZK1 A;  3P50 A;  3U8J A;  4EZ1 A;  2XQ6 A;  3UU8 A;  2ZJU A;  5BW2 A;  3UQ7 A;  2X00 A;  5KE4 A;  2VL0 A;  5LXB A;  4ILC A;  3U8N A;  4B5D A;  4NPP A;  3UU3 A;  5AFM A;  2YOE A;  5AFJ A;  5J0Z A;  4AFT A;  3WTI A;  5AIN A;  2X00 D;  5HCJ A;  4IL9 A;  5L47 A;  5JME A;  2Y54 A;  2BR7 A;  3RHW A;  4Z90 A;  4A97 A;  3GUA A;  5HEU A;  2XNT A;  5L4E A;  2W8F A;  2BYN A;  3UU4 A;  3SQ6 A;  4ZJT A;  2Y7Y A;  4WV9 A;  2ZJV A;  5FJV A;  1UV6 A;  2XQ8 A;  3JAD A;  2XZ5 A;  4QH1 A;  5BRX A;  4HFI A;  4FRR A;  4ZZC A;  2XNV A;  3U8L A;  4UY2 A;  3RIF A;  4ALX A;  4UM3 S;  2BJ0 A;  5L4H A;  3WTH A;  1UW6 A;  5LG3 A;  3WTM A;  2PGZ A;  3WTN A;  3EHZ A;  3IGQ A;  4TWD A;  4QH4 A;  3UU6 A;  3JAF A;  3TLU A;  4QAA A;  3TLW A;  3SQ9 A;  4HFE A;  4HFH A;  2XNU A;  4ZJS A;  3RQW A;  4UM3 P;  2XZ6 A;  2WNJ A;  3U8M A;  3U8K A;  4TNV A;  4BQT A;  3WIP A;  3SIO A;  3TLV A;  2XYS A;  2XQ5 A;  2XQ4 A;  4TWH A;  2C9T A;  2XQ3 A;  4QAB A;  4UM1 A;  4UM3 A;  3TLS A;  3T4M A;  2WNL A;  5KZU A;  3WTL A;  3EAM A;  5AFK A;  2BG9 B;  2BYQ A;  2YN6 A;  4XK9 A;  4HFD A;  3LSV A;  2UZ6 A;  2WNC A;  2XQ7 A;  4HFC A;  3C84 A;  4AFH A;  2Y56 A;  4HFB A;  3PEO A;  5AFL A;  2YKS A;  4ZK4 A;  2YME A;  4DBM A;  4ILB A;  4F8H A;  3UQ4 A;  4LML A;  2BG9 C;  4X5T A;  2PH9 A;  4IL4 A;  2BYS A;  4LMJ A; 
#chains in the Genus database with same CATH topology
 1UX2 A;  2BG9 A;  4COF A;  5J5F A;  3PMZ A;  5TVC A;  5AFH A;  2BG9 E;  4NZB A;  2BYP A;  5IUX A;  4UXU A;  3SH1 A;  3ZKR A;  3UU5 A;  2Y57 A;  4QAC A;  1I9B A;  4ZR6 A;  2Y58 A;  5CFB A;  4XHE A;  3C79 A;  4BFQ A;  5HEG A;  3EI0 A;  3RQU A;  5HCM A;  3ZDH A;  5J5H A;  4HQP A;  3RI5 A;  2BR8 A;  2WN9 A;  3WTK A;  5HEO A;  5HEH A;  5CO5 A;  5J5I A;  3JAE A;  5SYO A;  5BP0 A;  3UUB A;  2BYR A;  3WTO A;  3ZDG A;  3P4W A;  4IRE A;  4QH5 A;  3TLT A;  4A98 A;  4LMK A;  2XQA A;  4TWF A;  5AFN A;  5HEJ A;  4TNW A;  2XYT A;  4ILA A;  2YMD A;  4PIR A;  4AFG A;  4ZRU A;  2W8G A;  5AFM B;  4Z91 A;  3WTJ A;  3RIA A;  5J5G A;  4ZZB A;  2WZY A;  2XQ9 A;  4D01 A;  2QC1 B;  4ZK1 A;  3P50 A;  3U8J A;  4EZ1 A;  2XQ6 A;  3UU8 A;  2ZJU A;  5BW2 A;  3UQ7 A;  2X00 A;  5KE4 A;  2VL0 A;  5LXB A;  4ILC A;  3U8N A;  4B5D A;  4NPP A;  3UU3 A;  5AFM A;  2YOE A;  5AFJ A;  5J0Z A;  4AFT A;  3WTI A;  5AIN A;  2X00 D;  5HCJ A;  4IL9 A;  5L47 A;  5JME A;  2Y54 A;  2BR7 A;  3RHW A;  4Z90 A;  4A97 A;  3GUA A;  5HEU A;  2XNT A;  5L4E A;  2W8F A;  2BYN A;  3UU4 A;  3SQ6 A;  4ZJT A;  2Y7Y A;  4WV9 A;  2ZJV A;  5FJV A;  1UV6 A;  2XQ8 A;  3JAD A;  2XZ5 A;  4QH1 A;  5BRX A;  4HFI A;  4FRR A;  4ZZC A;  2XNV A;  3U8L A;  4UY2 A;  3RIF A;  4ALX A;  4UM3 S;  2BJ0 A;  5L4H A;  3WTH A;  1UW6 A;  5LG3 A;  3WTM A;  2PGZ A;  3WTN A;  3EHZ A;  3IGQ A;  4TWD A;  4QH4 A;  3UU6 A;  3JAF A;  3TLU A;  4QAA A;  3TLW A;  3SQ9 A;  4HFE A;  4HFH A;  2XNU A;  4ZJS A;  3RQW A;  4UM3 P;  2XZ6 A;  2WNJ A;  3U8M A;  3U8K A;  4TNV A;  4BQT A;  3WIP A;  3SIO A;  3TLV A;  2XYS A;  2XQ5 A;  2XQ4 A;  4TWH A;  2C9T A;  2XQ3 A;  4QAB A;  4UM1 A;  4UM3 A;  3TLS A;  3T4M A;  2WNL A;  5KZU A;  3WTL A;  3EAM A;  5AFK A;  2BG9 B;  2BYQ A;  2YN6 A;  4XK9 A;  4HFD A;  3LSV A;  2UZ6 A;  2WNC A;  2XQ7 A;  4HFC A;  3C84 A;  4AFH A;  2Y56 A;  4HFB A;  3PEO A;  5AFL A;  2YKS A;  4ZK4 A;  2YME A;  4DBM A;  4ILB A;  4F8H A;  3UQ4 A;  4LML A;  2BG9 C;  4X5T A;  2PH9 A;  4IL4 A;  2BYS A;  4LMJ A; 
#chains in the Genus database with same CATH homology
 1UX2 A;  2BG9 A;  4COF A;  5J5F A;  3PMZ A;  5TVC A;  5AFH A;  2BG9 E;  4NZB A;  2BYP A;  5IUX A;  4UXU A;  3SH1 A;  3ZKR A;  3UU5 A;  2Y57 A;  4QAC A;  1I9B A;  4ZR6 A;  2Y58 A;  5CFB A;  4XHE A;  3C79 A;  4BFQ A;  5HEG A;  3EI0 A;  3RQU A;  5HCM A;  3ZDH A;  5J5H A;  4HQP A;  3RI5 A;  2BR8 A;  2WN9 A;  3WTK A;  5HEO A;  5HEH A;  5CO5 A;  5J5I A;  3JAE A;  5SYO A;  5BP0 A;  3UUB A;  2BYR A;  3WTO A;  3ZDG A;  3P4W A;  4IRE A;  4QH5 A;  3TLT A;  4A98 A;  4LMK A;  2XQA A;  4TWF A;  5AFN A;  5HEJ A;  4TNW A;  2XYT A;  4ILA A;  2YMD A;  4PIR A;  4AFG A;  4ZRU A;  2W8G A;  5AFM B;  4Z91 A;  3WTJ A;  3RIA A;  5J5G A;  4ZZB A;  2WZY A;  2XQ9 A;  4D01 A;  2QC1 B;  4ZK1 A;  3P50 A;  3U8J A;  4EZ1 A;  2XQ6 A;  3UU8 A;  2ZJU A;  5BW2 A;  3UQ7 A;  2X00 A;  5KE4 A;  2VL0 A;  5LXB A;  4ILC A;  3U8N A;  4B5D A;  4NPP A;  3UU3 A;  5AFM A;  2YOE A;  5AFJ A;  5J0Z A;  4AFT A;  3WTI A;  5AIN A;  2X00 D;  5HCJ A;  4IL9 A;  5L47 A;  5JME A;  2Y54 A;  2BR7 A;  3RHW A;  4Z90 A;  4A97 A;  3GUA A;  5HEU A;  2XNT A;  5L4E A;  2W8F A;  2BYN A;  3UU4 A;  3SQ6 A;  4ZJT A;  2Y7Y A;  4WV9 A;  2ZJV A;  5FJV A;  1UV6 A;  2XQ8 A;  3JAD A;  2XZ5 A;  4QH1 A;  5BRX A;  4HFI A;  4FRR A;  4ZZC A;  2XNV A;  3U8L A;  4UY2 A;  3RIF A;  4ALX A;  4UM3 S;  2BJ0 A;  5L4H A;  3WTH A;  1UW6 A;  5LG3 A;  3WTM A;  2PGZ A;  3WTN A;  3EHZ A;  3IGQ A;  4TWD A;  4QH4 A;  3UU6 A;  3JAF A;  3TLU A;  4QAA A;  3TLW A;  3SQ9 A;  4HFE A;  4HFH A;  2XNU A;  4ZJS A;  3RQW A;  4UM3 P;  2XZ6 A;  2WNJ A;  3U8M A;  3U8K A;  4TNV A;  4BQT A;  3WIP A;  3SIO A;  3TLV A;  2XYS A;  2XQ5 A;  2XQ4 A;  4TWH A;  2C9T A;  2XQ3 A;  4QAB A;  4UM1 A;  4UM3 A;  3TLS A;  3T4M A;  2WNL A;  5KZU A;  3WTL A;  3EAM A;  5AFK A;  2BG9 B;  2BYQ A;  2YN6 A;  4XK9 A;  4HFD A;  3LSV A;  2UZ6 A;  2WNC A;  2XQ7 A;  4HFC A;  3C84 A;  4AFH A;  2Y56 A;  4HFB A;  3PEO A;  5AFL A;  2YKS A;  4ZK4 A;  2YME A;  4DBM A;  4ILB A;  4F8H A;  3UQ4 A;  4LML A;  2BG9 C;  4X5T A;  2PH9 A;  4IL4 A;  2BYS A;  4LMJ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...