3WTMA

Crystal structure of lymnaea stagnalis acetylcholine-binding protein q55r mutant complexed with nitromethylene analogue of imidacloprid
Total Genus 48
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
207
structure length
207
Chain Sequence
ADRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQRTTWSDRTLAWDSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Signaling protein
source organism Lymnaea stagnalis
publication title Studies on an acetylcholine binding protein identify a basic residue in loop G on the beta 1 strand as a new structural determinant of neonicotinoid actions
pubmed doi rcsb
molecule keywords Acetylcholine-binding protein
total genus 48
structure length 207
sequence length 207
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2014-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3wtmA00
2BG9C 4HFEA 4QH5A 2XQ3A 5FJVA 2VL0A 2XQ8A 3EAMA 3U8JA 3SQ9A 2WZYA 5SYOA 3T4MA 3C84A 2Y7YA 3P4WA 5JMEA 5KE4A 4FRRA 4NPPA 5HEJA 2XQ6A 5CO5A 4UM3P 4ZJSA 4B5DA 2PH9A 4QACA 4ILBA 3C79A 3U8MA 5TVCA 5AFKA 2Y56A 3UU4A 5J5HA 4TWHA 3PMZA 4XK9A 3U8LA 2X00D 4BQTA 4HQPA 4ZZBA 3RIAA 3PEOA 3RQUA 5AFMB 4WV9A 4QABA 4Z90A 4LMLA 3LSVA 2XYSA 3RHWA 3UQ4A 2YKSA 2Y54A 4ILCA 2XYTA 3WTKA 2Y57A 2WN9A 4ZR6A 3JADA 4QAAA 5KZUA 5L47A 1UX2A 2XQAA 2YMEA 3TLVA 4A98A 3WTNA 3SQ6A 2YN6A 4ILAA 3ZDHA 2BYSA 4TWDA 5AFNA 2XZ5A 5LG3A 4IREA 3RQWA 2BR8A 3TLUA 3EI0A 4UXUA 3RIFA 5L4HA 4AFHA 3ZDGA 4AFTA 4TWFA 4EZ1A 4ZZCA 5J0ZA 4QH4A 3EHZA 2ZJVA 4COFA 5HCMA 3WTHA 3WTJA 5BRXA 2XQ7A 2WNCA 2ZJUA 5IUXA 3WTOA 4X5TA 5HEHA 2W8GA 1I9BA 2BG9B 3JAEA 2WNLA 4TNWA 4BFQA 3SIOA 4QH1A 4UY2A 4HFBA 4ZJTA 4IL9A 2XNVA 3WTIA 4Z91A 5BP0A 5L4EA 5AFMA 2XQ4A 4ALXA 4ZK4A 4D01A 5CFBA 5HEGA 5AFJA 4AFGA 4DBMA 2W8FA 4A97A 4ZK1A 3WIPA 3TLTA 3WTMA 4HFIA 2YMDA 2BR7A 5HEOA 2WNJA 2BYNA 2BYQA 2X00A 3UQ7A 2YOEA 2XQ5A 4HFDA 4PIRA 3UU6A 5J5FA 3P50A 4UM3S 4UM1A 4F8HA 2QC1B 4UM3A 2Y58A 2C9TA 3IGQA 5AINA 4IL4A 4LMKA 4TNVA 3UUBA 3TLWA 4XHEA 3U8NA 3GUAA 3UU8A 5AFHA 5J5IA 2XZ6A 2BYRA 3JAFA 5AFLA 2BG9A 3UU5A 4NZBA 5J5GA 5LXBA 3WTLA 3ZKRA 3RI5A 2BYPA 2UZ6A 2XQ9A 4ZRUA 5HEUA 2BG9E 4LMJA 1UV6A 5HCJA 3TLSA 2PGZA 2XNUA 3SH1A 2BJ0A 3UU3A 1UW6A 4HFHA 2XNTA 3U8KA 5BW2A 4HFCA
chains in the Genus database with same CATH superfamily
2BG9C 4HFEA 4QH5A 2XQ3A 5FJVA 2VL0A 2XQ8A 3EAMA 3U8JA 3SQ9A 2WZYA 5SYOA 3T4MA 3C84A 2Y7YA 3P4WA 5JMEA 5KE4A 4FRRA 4NPPA 5HEJA 2XQ6A 5CO5A 4UM3P 4ZJSA 4B5DA 2PH9A 4QACA 4ILBA 3C79A 3U8MA 5TVCA 5AFKA 2Y56A 3UU4A 5J5HA 4TWHA 3PMZA 4XK9A 3U8LA 2X00D 4BQTA 4HQPA 4ZZBA 3RIAA 3PEOA 3RQUA 5AFMB 4WV9A 4QABA 4Z90A 4LMLA 3LSVA 2XYSA 3RHWA 3UQ4A 2YKSA 2Y54A 4ILCA 2XYTA 3WTKA 2Y57A 2WN9A 4ZR6A 3JADA 4QAAA 5KZUA 5L47A 1UX2A 2XQAA 2YMEA 3TLVA 4A98A 3WTNA 3SQ6A 2YN6A 4ILAA 3ZDHA 2BYSA 4TWDA 5AFNA 2XZ5A 5LG3A 4IREA 3RQWA 2BR8A 3TLUA 3EI0A 4UXUA 3RIFA 5L4HA 4AFHA 3ZDGA 4AFTA 4TWFA 4EZ1A 4ZZCA 5J0ZA 4QH4A 3EHZA 2ZJVA 4COFA 5HCMA 3WTHA 3WTJA 5BRXA 2XQ7A 2WNCA 2ZJUA 5IUXA 3WTOA 4X5TA 5HEHA 2W8GA 1I9BA 2BG9B 3JAEA 2WNLA 4TNWA 4BFQA 3SIOA 4QH1A 4UY2A 4HFBA 4ZJTA 4IL9A 2XNVA 3WTIA 4Z91A 5BP0A 5L4EA 5AFMA 2XQ4A 4ALXA 4ZK4A 4D01A 5CFBA 5HEGA 5AFJA 4AFGA 4DBMA 2W8FA 4A97A 4ZK1A 3WIPA 3TLTA 3WTMA 4HFIA 2YMDA 2BR7A 5HEOA 2WNJA 2BYNA 2BYQA 2X00A 3UQ7A 2YOEA 2XQ5A 4HFDA 4PIRA 3UU6A 5J5FA 3P50A 4UM3S 4UM1A 4F8HA 2QC1B 4UM3A 2Y58A 2C9TA 3IGQA 5AINA 4IL4A 4LMKA 4TNVA 3UUBA 3TLWA 4XHEA 3U8NA 3GUAA 3UU8A 5AFHA 5J5IA 2XZ6A 2BYRA 3JAFA 5AFLA 2BG9A 3UU5A 4NZBA 5J5GA 5LXBA 3WTLA 3ZKRA 3RI5A 2BYPA 2UZ6A 2XQ9A 4ZRUA 5HEUA 2BG9E 4LMJA 1UV6A 5HCJA 3TLSA 2PGZA 2XNUA 3SH1A 2BJ0A 3UU3A 1UW6A 4HFHA 2XNTA 3U8KA 5BW2A 4HFCA
chains in the Genus database with same CATH topology
2BG9C 4HFEA 4QH5A 2XQ3A 5FJVA 2VL0A 2XQ8A 3EAMA 3U8JA 3SQ9A 2WZYA 5SYOA 3T4MA 3C84A 2Y7YA 3P4WA 5JMEA 5KE4A 4FRRA 4NPPA 5HEJA 2XQ6A 5CO5A 4UM3P 4ZJSA 4B5DA 2PH9A 4QACA 4ILBA 3C79A 3U8MA 5TVCA 5AFKA 2Y56A 3UU4A 5J5HA 4TWHA 3PMZA 4XK9A 3U8LA 2X00D 4BQTA 4HQPA 4ZZBA 3RIAA 3PEOA 3RQUA 5AFMB 4WV9A 4QABA 4Z90A 4LMLA 3LSVA 2XYSA 3RHWA 3UQ4A 2YKSA 2Y54A 4ILCA 2XYTA 3WTKA 2Y57A 2WN9A 4ZR6A 3JADA 4QAAA 5KZUA 5L47A 1UX2A 2XQAA 2YMEA 3TLVA 4A98A 3WTNA 3SQ6A 2YN6A 4ILAA 3ZDHA 2BYSA 4TWDA 5AFNA 2XZ5A 5LG3A 4IREA 3RQWA 2BR8A 3TLUA 3EI0A 4UXUA 3RIFA 5L4HA 4AFHA 3ZDGA 4AFTA 4TWFA 4EZ1A 4ZZCA 5J0ZA 4QH4A 3EHZA 2ZJVA 4COFA 5HCMA 3WTHA 3WTJA 5BRXA 2XQ7A 2WNCA 2ZJUA 5IUXA 3WTOA 4X5TA 5HEHA 2W8GA 1I9BA 2BG9B 3JAEA 2WNLA 4TNWA 4BFQA 3SIOA 4QH1A 4UY2A 4HFBA 4ZJTA 4IL9A 2XNVA 3WTIA 4Z91A 5BP0A 5L4EA 5AFMA 2XQ4A 4ALXA 4ZK4A 4D01A 5CFBA 5HEGA 5AFJA 4AFGA 4DBMA 2W8FA 4A97A 4ZK1A 3WIPA 3TLTA 3WTMA 4HFIA 2YMDA 2BR7A 5HEOA 2WNJA 2BYNA 2BYQA 2X00A 3UQ7A 2YOEA 2XQ5A 4HFDA 4PIRA 3UU6A 5J5FA 3P50A 4UM3S 4UM1A 4F8HA 2QC1B 4UM3A 2Y58A 2C9TA 3IGQA 5AINA 4IL4A 4LMKA 4TNVA 3UUBA 3TLWA 4XHEA 3U8NA 3GUAA 3UU8A 5AFHA 5J5IA 2XZ6A 2BYRA 3JAFA 5AFLA 2BG9A 3UU5A 4NZBA 5J5GA 5LXBA 3WTLA 3ZKRA 3RI5A 2BYPA 2UZ6A 2XQ9A 4ZRUA 5HEUA 2BG9E 4LMJA 1UV6A 5HCJA 3TLSA 2PGZA 2XNUA 3SH1A 2BJ0A 3UU3A 1UW6A 4HFHA 2XNTA 3U8KA 5BW2A 4HFCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BG9 C;  4HFE A;  4QH5 A;  2XQ3 A;  5FJV A;  2VL0 A;  2XQ8 A;  3EAM A;  3U8J A;  3SQ9 A;  2WZY A;  5SYO A;  3T4M A;  3C84 A;  2Y7Y A;  3P4W A;  5JME A;  5KE4 A;  4FRR A;  4NPP A;  5HEJ A;  2XQ6 A;  5CO5 A;  4UM3 P;  4ZJS A;  4B5D A;  2PH9 A;  4QAC A;  4ILB A;  3C79 A;  3U8M A;  5TVC A;  5AFK A;  2Y56 A;  3UU4 A;  5J5H A;  4TWH A;  3PMZ A;  4XK9 A;  3U8L A;  2X00 D;  4BQT A;  4HQP A;  4ZZB A;  3RIA A;  3PEO A;  3RQU A;  5AFM B;  4WV9 A;  4QAB A;  4Z90 A;  4LML A;  3LSV A;  2XYS A;  3RHW A;  3UQ4 A;  2YKS A;  2Y54 A;  4ILC A;  2XYT A;  3WTK A;  2Y57 A;  2WN9 A;  4ZR6 A;  3JAD A;  4QAA A;  5KZU A;  5L47 A;  1UX2 A;  2XQA A;  2YME A;  3TLV A;  4A98 A;  3WTN A;  3SQ6 A;  2YN6 A;  4ILA A;  3ZDH A;  2BYS A;  4TWD A;  5AFN A;  2XZ5 A;  5LG3 A;  4IRE A;  3RQW A;  2BR8 A;  3TLU A;  3EI0 A;  4UXU A;  3RIF A;  5L4H A;  4AFH A;  3ZDG A;  4AFT A;  4TWF A;  4EZ1 A;  4ZZC A;  5J0Z A;  4QH4 A;  3EHZ A;  2ZJV A;  4COF A;  5HCM A;  3WTH A;  3WTJ A;  5BRX A;  2XQ7 A;  2WNC A;  2ZJU A;  5IUX A;  3WTO A;  4X5T A;  5HEH A;  2W8G A;  1I9B A;  2BG9 B;  3JAE A;  2WNL A;  4TNW A;  4BFQ A;  3SIO A;  4QH1 A;  4UY2 A;  4HFB A;  4ZJT A;  4IL9 A;  2XNV A;  3WTI A;  4Z91 A;  5BP0 A;  5L4E A;  5AFM A;  2XQ4 A;  4ALX A;  4ZK4 A;  4D01 A;  5CFB A;  5HEG A;  5AFJ A;  4AFG A;  4DBM A;  2W8F A;  4A97 A;  4ZK1 A;  3WIP A;  3TLT A;  3WTM A;  4HFI A;  2YMD A;  2BR7 A;  5HEO A;  2WNJ A;  2BYN A;  2BYQ A;  2X00 A;  3UQ7 A;  2YOE A;  2XQ5 A;  4HFD A;  4PIR A;  3UU6 A;  5J5F A;  3P50 A;  4UM3 S;  4UM1 A;  4F8H A;  2QC1 B;  4UM3 A;  2Y58 A;  2C9T A;  3IGQ A;  5AIN A;  4IL4 A;  4LMK A;  4TNV A;  3UUB A;  3TLW A;  4XHE A;  3U8N A;  3GUA A;  3UU8 A;  5AFH A;  5J5I A;  2XZ6 A;  2BYR A;  3JAF A;  5AFL A;  2BG9 A;  3UU5 A;  4NZB A;  5J5G A;  5LXB A;  3WTL A;  3ZKR A;  3RI5 A;  2BYP A;  2UZ6 A;  2XQ9 A;  4ZRU A;  5HEU A;  2BG9 E;  4LMJ A;  1UV6 A;  5HCJ A;  3TLS A;  2PGZ A;  2XNU A;  3SH1 A;  2BJ0 A;  3UU3 A;  1UW6 A;  4HFH A;  2XNT A;  3U8K A;  5BW2 A;  4HFC A; 
#chains in the Genus database with same CATH topology
 2BG9 C;  4HFE A;  4QH5 A;  2XQ3 A;  5FJV A;  2VL0 A;  2XQ8 A;  3EAM A;  3U8J A;  3SQ9 A;  2WZY A;  5SYO A;  3T4M A;  3C84 A;  2Y7Y A;  3P4W A;  5JME A;  5KE4 A;  4FRR A;  4NPP A;  5HEJ A;  2XQ6 A;  5CO5 A;  4UM3 P;  4ZJS A;  4B5D A;  2PH9 A;  4QAC A;  4ILB A;  3C79 A;  3U8M A;  5TVC A;  5AFK A;  2Y56 A;  3UU4 A;  5J5H A;  4TWH A;  3PMZ A;  4XK9 A;  3U8L A;  2X00 D;  4BQT A;  4HQP A;  4ZZB A;  3RIA A;  3PEO A;  3RQU A;  5AFM B;  4WV9 A;  4QAB A;  4Z90 A;  4LML A;  3LSV A;  2XYS A;  3RHW A;  3UQ4 A;  2YKS A;  2Y54 A;  4ILC A;  2XYT A;  3WTK A;  2Y57 A;  2WN9 A;  4ZR6 A;  3JAD A;  4QAA A;  5KZU A;  5L47 A;  1UX2 A;  2XQA A;  2YME A;  3TLV A;  4A98 A;  3WTN A;  3SQ6 A;  2YN6 A;  4ILA A;  3ZDH A;  2BYS A;  4TWD A;  5AFN A;  2XZ5 A;  5LG3 A;  4IRE A;  3RQW A;  2BR8 A;  3TLU A;  3EI0 A;  4UXU A;  3RIF A;  5L4H A;  4AFH A;  3ZDG A;  4AFT A;  4TWF A;  4EZ1 A;  4ZZC A;  5J0Z A;  4QH4 A;  3EHZ A;  2ZJV A;  4COF A;  5HCM A;  3WTH A;  3WTJ A;  5BRX A;  2XQ7 A;  2WNC A;  2ZJU A;  5IUX A;  3WTO A;  4X5T A;  5HEH A;  2W8G A;  1I9B A;  2BG9 B;  3JAE A;  2WNL A;  4TNW A;  4BFQ A;  3SIO A;  4QH1 A;  4UY2 A;  4HFB A;  4ZJT A;  4IL9 A;  2XNV A;  3WTI A;  4Z91 A;  5BP0 A;  5L4E A;  5AFM A;  2XQ4 A;  4ALX A;  4ZK4 A;  4D01 A;  5CFB A;  5HEG A;  5AFJ A;  4AFG A;  4DBM A;  2W8F A;  4A97 A;  4ZK1 A;  3WIP A;  3TLT A;  3WTM A;  4HFI A;  2YMD A;  2BR7 A;  5HEO A;  2WNJ A;  2BYN A;  2BYQ A;  2X00 A;  3UQ7 A;  2YOE A;  2XQ5 A;  4HFD A;  4PIR A;  3UU6 A;  5J5F A;  3P50 A;  4UM3 S;  4UM1 A;  4F8H A;  2QC1 B;  4UM3 A;  2Y58 A;  2C9T A;  3IGQ A;  5AIN A;  4IL4 A;  4LMK A;  4TNV A;  3UUB A;  3TLW A;  4XHE A;  3U8N A;  3GUA A;  3UU8 A;  5AFH A;  5J5I A;  2XZ6 A;  2BYR A;  3JAF A;  5AFL A;  2BG9 A;  3UU5 A;  4NZB A;  5J5G A;  5LXB A;  3WTL A;  3ZKR A;  3RI5 A;  2BYP A;  2UZ6 A;  2XQ9 A;  4ZRU A;  5HEU A;  2BG9 E;  4LMJ A;  1UV6 A;  5HCJ A;  3TLS A;  2PGZ A;  2XNU A;  3SH1 A;  2BJ0 A;  3UU3 A;  1UW6 A;  4HFH A;  2XNT A;  3U8K A;  5BW2 A;  4HFC A; 
#chains in the Genus database with same CATH homology
 2BG9 C;  4HFE A;  4QH5 A;  2XQ3 A;  5FJV A;  2VL0 A;  2XQ8 A;  3EAM A;  3U8J A;  3SQ9 A;  2WZY A;  5SYO A;  3T4M A;  3C84 A;  2Y7Y A;  3P4W A;  5JME A;  5KE4 A;  4FRR A;  4NPP A;  5HEJ A;  2XQ6 A;  5CO5 A;  4UM3 P;  4ZJS A;  4B5D A;  2PH9 A;  4QAC A;  4ILB A;  3C79 A;  3U8M A;  5TVC A;  5AFK A;  2Y56 A;  3UU4 A;  5J5H A;  4TWH A;  3PMZ A;  4XK9 A;  3U8L A;  2X00 D;  4BQT A;  4HQP A;  4ZZB A;  3RIA A;  3PEO A;  3RQU A;  5AFM B;  4WV9 A;  4QAB A;  4Z90 A;  4LML A;  3LSV A;  2XYS A;  3RHW A;  3UQ4 A;  2YKS A;  2Y54 A;  4ILC A;  2XYT A;  3WTK A;  2Y57 A;  2WN9 A;  4ZR6 A;  3JAD A;  4QAA A;  5KZU A;  5L47 A;  1UX2 A;  2XQA A;  2YME A;  3TLV A;  4A98 A;  3WTN A;  3SQ6 A;  2YN6 A;  4ILA A;  3ZDH A;  2BYS A;  4TWD A;  5AFN A;  2XZ5 A;  5LG3 A;  4IRE A;  3RQW A;  2BR8 A;  3TLU A;  3EI0 A;  4UXU A;  3RIF A;  5L4H A;  4AFH A;  3ZDG A;  4AFT A;  4TWF A;  4EZ1 A;  4ZZC A;  5J0Z A;  4QH4 A;  3EHZ A;  2ZJV A;  4COF A;  5HCM A;  3WTH A;  3WTJ A;  5BRX A;  2XQ7 A;  2WNC A;  2ZJU A;  5IUX A;  3WTO A;  4X5T A;  5HEH A;  2W8G A;  1I9B A;  2BG9 B;  3JAE A;  2WNL A;  4TNW A;  4BFQ A;  3SIO A;  4QH1 A;  4UY2 A;  4HFB A;  4ZJT A;  4IL9 A;  2XNV A;  3WTI A;  4Z91 A;  5BP0 A;  5L4E A;  5AFM A;  2XQ4 A;  4ALX A;  4ZK4 A;  4D01 A;  5CFB A;  5HEG A;  5AFJ A;  4AFG A;  4DBM A;  2W8F A;  4A97 A;  4ZK1 A;  3WIP A;  3TLT A;  3WTM A;  4HFI A;  2YMD A;  2BR7 A;  5HEO A;  2WNJ A;  2BYN A;  2BYQ A;  2X00 A;  3UQ7 A;  2YOE A;  2XQ5 A;  4HFD A;  4PIR A;  3UU6 A;  5J5F A;  3P50 A;  4UM3 S;  4UM1 A;  4F8H A;  2QC1 B;  4UM3 A;  2Y58 A;  2C9T A;  3IGQ A;  5AIN A;  4IL4 A;  4LMK A;  4TNV A;  3UUB A;  3TLW A;  4XHE A;  3U8N A;  3GUA A;  3UU8 A;  5AFH A;  5J5I A;  2XZ6 A;  2BYR A;  3JAF A;  5AFL A;  2BG9 A;  3UU5 A;  4NZB A;  5J5G A;  5LXB A;  3WTL A;  3ZKR A;  3RI5 A;  2BYP A;  2UZ6 A;  2XQ9 A;  4ZRU A;  5HEU A;  2BG9 E;  4LMJ A;  1UV6 A;  5HCJ A;  3TLS A;  2PGZ A;  2XNU A;  3SH1 A;  2BJ0 A;  3UU3 A;  1UW6 A;  4HFH A;  2XNT A;  3U8K A;  5BW2 A;  4HFC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...