3WTNA

Crystal structure of lymnaea stagnalis acetylcholine binding protein complexed with desnitro-imidacloprid
Total Genus 48
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
208
structure length
208
Chain Sequence
AEAADRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWDSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Signaling protein
molecule keywords Acetylcholine-binding protein
publication title Studies on an acetylcholine binding protein identify a basic residue in loop G on the beta 1 strand as a new structural determinant of neonicotinoid actions
pubmed doi rcsb
source organism Lymnaea stagnalis
total genus 48
structure length 208
sequence length 208
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2014-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3wtnA00
4WV9A 4HFIA 4UM3S 5J5HA 4NPPA 4TWFA 5SYOA 5JMEA 3ZDHA 2BYSA 4XK9A 3TLSA 5TVCA 3TLWA 5J0ZA 3UU5A 4ILAA 4A98A 2BG9C 5HEUA 4AFHA 3TLVA 2WNLA 4ZR6A 2WNJA 5AINA 2XYTA 4ZZBA 3UQ7A 4AFGA 3SQ6A 2ZJUA 4LMJA 2XZ6A 3P4WA 4HFHA 5CO5A 4EZ1A 4PIRA 2XNUA 5HEGA 2C9TA 4IL9A 2BYNA 4QH4A 3RIFA 4HFEA 2XQ8A 3GUAA 2PGZA 5AFNA 2XQAA 4QH1A 4IREA 2X00A 2YMDA 5AFLA 5L4HA 3LSVA 4UM3P 4AFTA 4ZK1A 4UM1A 5L47A 3C84A 3WIPA 4A97A 4HFCA 4BQTA 3RHWA 2Y58A 3C79A 3EHZA 2XQ3A 4QACA 4TNWA 3UU3A 2BG9A 5AFHA 4HQPA 3RIAA 2BR7A 2XQ7A 2BJ0A 3WTLA 5HCJA 2BG9B 5BP0A 4LMKA 4ILCA 3WTIA 2X00D 3WTNA 2BYRA 4QAAA 5J5FA 4HFBA 2UZ6A 2YOEA 4F8HA 3RI5A 4B5DA 4ZZCA 4D01A 3EI0A 4Z91A 4ZRUA 3RQUA 4TWDA 3U8KA 2BR8A 5HEOA 3RQWA 1I9BA 2Y56A 2YMEA 3U8LA 4IL4A 2WN9A 3WTHA 4TNVA 5LXBA 3UU8A 2QC1B 3ZKRA 2WZYA 4DBMA 4HFDA 4ALXA 3PMZA 2WNCA 3SIOA 2Y7YA 3UU6A 3WTJA 2VL0A 2XNTA 5KZUA 3EAMA 4XHEA 1UW6A 2Y54A 4BFQA 2W8FA 3UUBA 5HEJA 4ZJSA 3PEOA 5HCMA 5J5GA 2YKSA 3SQ9A 2XQ6A 5HEHA 2XQ5A 2ZJVA 3JAFA 4QH5A 2BYPA 2XNVA 3WTMA 4TWHA 4QABA 5LG3A 4LMLA 5AFMB 5IUXA 2XYSA 2W8GA 3IGQA 4UM3A 3UU4A 4UY2A 5AFKA 2XQ4A 2XZ5A 3T4MA 3SH1A 4X5TA 5BRXA 2BG9E 5FJVA 5AFJA 4ZJTA 3U8NA 3JAEA 3JADA 4Z90A 3ZDGA 3TLTA 2XQ9A 3WTOA 4ILBA 5CFBA 1UX2A 5J5IA 5L4EA 3U8JA 1UV6A 2BYQA 2Y57A 3WTKA 4COFA 3P50A 3UQ4A 5KE4A 2YN6A 4ZK4A 3TLUA 2PH9A 5AFMA 5BW2A 4UXUA 3U8MA 4NZBA 4FRRA
chains in the Genus database with same CATH superfamily
4WV9A 4HFIA 4UM3S 5J5HA 4NPPA 4TWFA 5SYOA 5JMEA 3ZDHA 2BYSA 4XK9A 3TLSA 5TVCA 3TLWA 5J0ZA 3UU5A 4ILAA 4A98A 2BG9C 5HEUA 4AFHA 3TLVA 2WNLA 4ZR6A 2WNJA 5AINA 2XYTA 4ZZBA 3UQ7A 4AFGA 3SQ6A 2ZJUA 4LMJA 2XZ6A 3P4WA 4HFHA 5CO5A 4EZ1A 4PIRA 2XNUA 5HEGA 2C9TA 4IL9A 2BYNA 4QH4A 3RIFA 4HFEA 2XQ8A 3GUAA 2PGZA 5AFNA 2XQAA 4QH1A 4IREA 2X00A 2YMDA 5AFLA 5L4HA 3LSVA 4UM3P 4AFTA 4ZK1A 4UM1A 5L47A 3C84A 3WIPA 4A97A 4HFCA 4BQTA 3RHWA 2Y58A 3C79A 3EHZA 2XQ3A 4QACA 4TNWA 3UU3A 2BG9A 5AFHA 4HQPA 3RIAA 2BR7A 2XQ7A 2BJ0A 3WTLA 5HCJA 2BG9B 5BP0A 4LMKA 4ILCA 3WTIA 2X00D 3WTNA 2BYRA 4QAAA 5J5FA 4HFBA 2UZ6A 2YOEA 4F8HA 3RI5A 4B5DA 4ZZCA 4D01A 3EI0A 4Z91A 4ZRUA 3RQUA 4TWDA 3U8KA 2BR8A 5HEOA 3RQWA 1I9BA 2Y56A 2YMEA 3U8LA 4IL4A 2WN9A 3WTHA 4TNVA 5LXBA 3UU8A 2QC1B 3ZKRA 2WZYA 4DBMA 4HFDA 4ALXA 3PMZA 2WNCA 3SIOA 2Y7YA 3UU6A 3WTJA 2VL0A 2XNTA 5KZUA 3EAMA 4XHEA 1UW6A 2Y54A 4BFQA 2W8FA 3UUBA 5HEJA 4ZJSA 3PEOA 5HCMA 5J5GA 2YKSA 3SQ9A 2XQ6A 5HEHA 2XQ5A 2ZJVA 3JAFA 4QH5A 2BYPA 2XNVA 3WTMA 4TWHA 4QABA 5LG3A 4LMLA 5AFMB 5IUXA 2XYSA 2W8GA 3IGQA 4UM3A 3UU4A 4UY2A 5AFKA 2XQ4A 2XZ5A 3T4MA 3SH1A 4X5TA 5BRXA 2BG9E 5FJVA 5AFJA 4ZJTA 3U8NA 3JAEA 3JADA 4Z90A 3ZDGA 3TLTA 2XQ9A 3WTOA 4ILBA 5CFBA 1UX2A 5J5IA 5L4EA 3U8JA 1UV6A 2BYQA 2Y57A 3WTKA 4COFA 3P50A 3UQ4A 5KE4A 2YN6A 4ZK4A 3TLUA 2PH9A 5AFMA 5BW2A 4UXUA 3U8MA 4NZBA 4FRRA
chains in the Genus database with same CATH topology
4WV9A 4HFIA 4UM3S 5J5HA 4NPPA 4TWFA 5SYOA 5JMEA 3ZDHA 2BYSA 4XK9A 3TLSA 5TVCA 3TLWA 5J0ZA 3UU5A 4ILAA 4A98A 2BG9C 5HEUA 4AFHA 3TLVA 2WNLA 4ZR6A 2WNJA 5AINA 2XYTA 4ZZBA 3UQ7A 4AFGA 3SQ6A 2ZJUA 4LMJA 2XZ6A 3P4WA 4HFHA 5CO5A 4EZ1A 4PIRA 2XNUA 5HEGA 2C9TA 4IL9A 2BYNA 4QH4A 3RIFA 4HFEA 2XQ8A 3GUAA 2PGZA 5AFNA 2XQAA 4QH1A 4IREA 2X00A 2YMDA 5AFLA 5L4HA 3LSVA 4UM3P 4AFTA 4ZK1A 4UM1A 5L47A 3C84A 3WIPA 4A97A 4HFCA 4BQTA 3RHWA 2Y58A 3C79A 3EHZA 2XQ3A 4QACA 4TNWA 3UU3A 2BG9A 5AFHA 4HQPA 3RIAA 2BR7A 2XQ7A 2BJ0A 3WTLA 5HCJA 2BG9B 5BP0A 4LMKA 4ILCA 3WTIA 2X00D 3WTNA 2BYRA 4QAAA 5J5FA 4HFBA 2UZ6A 2YOEA 4F8HA 3RI5A 4B5DA 4ZZCA 4D01A 3EI0A 4Z91A 4ZRUA 3RQUA 4TWDA 3U8KA 2BR8A 5HEOA 3RQWA 1I9BA 2Y56A 2YMEA 3U8LA 4IL4A 2WN9A 3WTHA 4TNVA 5LXBA 3UU8A 2QC1B 3ZKRA 2WZYA 4DBMA 4HFDA 4ALXA 3PMZA 2WNCA 3SIOA 2Y7YA 3UU6A 3WTJA 2VL0A 2XNTA 5KZUA 3EAMA 4XHEA 1UW6A 2Y54A 4BFQA 2W8FA 3UUBA 5HEJA 4ZJSA 3PEOA 5HCMA 5J5GA 2YKSA 3SQ9A 2XQ6A 5HEHA 2XQ5A 2ZJVA 3JAFA 4QH5A 2BYPA 2XNVA 3WTMA 4TWHA 4QABA 5LG3A 4LMLA 5AFMB 5IUXA 2XYSA 2W8GA 3IGQA 4UM3A 3UU4A 4UY2A 5AFKA 2XQ4A 2XZ5A 3T4MA 3SH1A 4X5TA 5BRXA 2BG9E 5FJVA 5AFJA 4ZJTA 3U8NA 3JAEA 3JADA 4Z90A 3ZDGA 3TLTA 2XQ9A 3WTOA 4ILBA 5CFBA 1UX2A 5J5IA 5L4EA 3U8JA 1UV6A 2BYQA 2Y57A 3WTKA 4COFA 3P50A 3UQ4A 5KE4A 2YN6A 4ZK4A 3TLUA 2PH9A 5AFMA 5BW2A 4UXUA 3U8MA 4NZBA 4FRRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WV9 A;  4HFI A;  4UM3 S;  5J5H A;  4NPP A;  4TWF A;  5SYO A;  5JME A;  3ZDH A;  2BYS A;  4XK9 A;  3TLS A;  5TVC A;  3TLW A;  5J0Z A;  3UU5 A;  4ILA A;  4A98 A;  2BG9 C;  5HEU A;  4AFH A;  3TLV A;  2WNL A;  4ZR6 A;  2WNJ A;  5AIN A;  2XYT A;  4ZZB A;  3UQ7 A;  4AFG A;  3SQ6 A;  2ZJU A;  4LMJ A;  2XZ6 A;  3P4W A;  4HFH A;  5CO5 A;  4EZ1 A;  4PIR A;  2XNU A;  5HEG A;  2C9T A;  4IL9 A;  2BYN A;  4QH4 A;  3RIF A;  4HFE A;  2XQ8 A;  3GUA A;  2PGZ A;  5AFN A;  2XQA A;  4QH1 A;  4IRE A;  2X00 A;  2YMD A;  5AFL A;  5L4H A;  3LSV A;  4UM3 P;  4AFT A;  4ZK1 A;  4UM1 A;  5L47 A;  3C84 A;  3WIP A;  4A97 A;  4HFC A;  4BQT A;  3RHW A;  2Y58 A;  3C79 A;  3EHZ A;  2XQ3 A;  4QAC A;  4TNW A;  3UU3 A;  2BG9 A;  5AFH A;  4HQP A;  3RIA A;  2BR7 A;  2XQ7 A;  2BJ0 A;  3WTL A;  5HCJ A;  2BG9 B;  5BP0 A;  4LMK A;  4ILC A;  3WTI A;  2X00 D;  3WTN A;  2BYR A;  4QAA A;  5J5F A;  4HFB A;  2UZ6 A;  2YOE A;  4F8H A;  3RI5 A;  4B5D A;  4ZZC A;  4D01 A;  3EI0 A;  4Z91 A;  4ZRU A;  3RQU A;  4TWD A;  3U8K A;  2BR8 A;  5HEO A;  3RQW A;  1I9B A;  2Y56 A;  2YME A;  3U8L A;  4IL4 A;  2WN9 A;  3WTH A;  4TNV A;  5LXB A;  3UU8 A;  2QC1 B;  3ZKR A;  2WZY A;  4DBM A;  4HFD A;  4ALX A;  3PMZ A;  2WNC A;  3SIO A;  2Y7Y A;  3UU6 A;  3WTJ A;  2VL0 A;  2XNT A;  5KZU A;  3EAM A;  4XHE A;  1UW6 A;  2Y54 A;  4BFQ A;  2W8F A;  3UUB A;  5HEJ A;  4ZJS A;  3PEO A;  5HCM A;  5J5G A;  2YKS A;  3SQ9 A;  2XQ6 A;  5HEH A;  2XQ5 A;  2ZJV A;  3JAF A;  4QH5 A;  2BYP A;  2XNV A;  3WTM A;  4TWH A;  4QAB A;  5LG3 A;  4LML A;  5AFM B;  5IUX A;  2XYS A;  2W8G A;  3IGQ A;  4UM3 A;  3UU4 A;  4UY2 A;  5AFK A;  2XQ4 A;  2XZ5 A;  3T4M A;  3SH1 A;  4X5T A;  5BRX A;  2BG9 E;  5FJV A;  5AFJ A;  4ZJT A;  3U8N A;  3JAE A;  3JAD A;  4Z90 A;  3ZDG A;  3TLT A;  2XQ9 A;  3WTO A;  4ILB A;  5CFB A;  1UX2 A;  5J5I A;  5L4E A;  3U8J A;  1UV6 A;  2BYQ A;  2Y57 A;  3WTK A;  4COF A;  3P50 A;  3UQ4 A;  5KE4 A;  2YN6 A;  4ZK4 A;  3TLU A;  2PH9 A;  5AFM A;  5BW2 A;  4UXU A;  3U8M A;  4NZB A;  4FRR A; 
#chains in the Genus database with same CATH topology
 4WV9 A;  4HFI A;  4UM3 S;  5J5H A;  4NPP A;  4TWF A;  5SYO A;  5JME A;  3ZDH A;  2BYS A;  4XK9 A;  3TLS A;  5TVC A;  3TLW A;  5J0Z A;  3UU5 A;  4ILA A;  4A98 A;  2BG9 C;  5HEU A;  4AFH A;  3TLV A;  2WNL A;  4ZR6 A;  2WNJ A;  5AIN A;  2XYT A;  4ZZB A;  3UQ7 A;  4AFG A;  3SQ6 A;  2ZJU A;  4LMJ A;  2XZ6 A;  3P4W A;  4HFH A;  5CO5 A;  4EZ1 A;  4PIR A;  2XNU A;  5HEG A;  2C9T A;  4IL9 A;  2BYN A;  4QH4 A;  3RIF A;  4HFE A;  2XQ8 A;  3GUA A;  2PGZ A;  5AFN A;  2XQA A;  4QH1 A;  4IRE A;  2X00 A;  2YMD A;  5AFL A;  5L4H A;  3LSV A;  4UM3 P;  4AFT A;  4ZK1 A;  4UM1 A;  5L47 A;  3C84 A;  3WIP A;  4A97 A;  4HFC A;  4BQT A;  3RHW A;  2Y58 A;  3C79 A;  3EHZ A;  2XQ3 A;  4QAC A;  4TNW A;  3UU3 A;  2BG9 A;  5AFH A;  4HQP A;  3RIA A;  2BR7 A;  2XQ7 A;  2BJ0 A;  3WTL A;  5HCJ A;  2BG9 B;  5BP0 A;  4LMK A;  4ILC A;  3WTI A;  2X00 D;  3WTN A;  2BYR A;  4QAA A;  5J5F A;  4HFB A;  2UZ6 A;  2YOE A;  4F8H A;  3RI5 A;  4B5D A;  4ZZC A;  4D01 A;  3EI0 A;  4Z91 A;  4ZRU A;  3RQU A;  4TWD A;  3U8K A;  2BR8 A;  5HEO A;  3RQW A;  1I9B A;  2Y56 A;  2YME A;  3U8L A;  4IL4 A;  2WN9 A;  3WTH A;  4TNV A;  5LXB A;  3UU8 A;  2QC1 B;  3ZKR A;  2WZY A;  4DBM A;  4HFD A;  4ALX A;  3PMZ A;  2WNC A;  3SIO A;  2Y7Y A;  3UU6 A;  3WTJ A;  2VL0 A;  2XNT A;  5KZU A;  3EAM A;  4XHE A;  1UW6 A;  2Y54 A;  4BFQ A;  2W8F A;  3UUB A;  5HEJ A;  4ZJS A;  3PEO A;  5HCM A;  5J5G A;  2YKS A;  3SQ9 A;  2XQ6 A;  5HEH A;  2XQ5 A;  2ZJV A;  3JAF A;  4QH5 A;  2BYP A;  2XNV A;  3WTM A;  4TWH A;  4QAB A;  5LG3 A;  4LML A;  5AFM B;  5IUX A;  2XYS A;  2W8G A;  3IGQ A;  4UM3 A;  3UU4 A;  4UY2 A;  5AFK A;  2XQ4 A;  2XZ5 A;  3T4M A;  3SH1 A;  4X5T A;  5BRX A;  2BG9 E;  5FJV A;  5AFJ A;  4ZJT A;  3U8N A;  3JAE A;  3JAD A;  4Z90 A;  3ZDG A;  3TLT A;  2XQ9 A;  3WTO A;  4ILB A;  5CFB A;  1UX2 A;  5J5I A;  5L4E A;  3U8J A;  1UV6 A;  2BYQ A;  2Y57 A;  3WTK A;  4COF A;  3P50 A;  3UQ4 A;  5KE4 A;  2YN6 A;  4ZK4 A;  3TLU A;  2PH9 A;  5AFM A;  5BW2 A;  4UXU A;  3U8M A;  4NZB A;  4FRR A; 
#chains in the Genus database with same CATH homology
 4WV9 A;  4HFI A;  4UM3 S;  5J5H A;  4NPP A;  4TWF A;  5SYO A;  5JME A;  3ZDH A;  2BYS A;  4XK9 A;  3TLS A;  5TVC A;  3TLW A;  5J0Z A;  3UU5 A;  4ILA A;  4A98 A;  2BG9 C;  5HEU A;  4AFH A;  3TLV A;  2WNL A;  4ZR6 A;  2WNJ A;  5AIN A;  2XYT A;  4ZZB A;  3UQ7 A;  4AFG A;  3SQ6 A;  2ZJU A;  4LMJ A;  2XZ6 A;  3P4W A;  4HFH A;  5CO5 A;  4EZ1 A;  4PIR A;  2XNU A;  5HEG A;  2C9T A;  4IL9 A;  2BYN A;  4QH4 A;  3RIF A;  4HFE A;  2XQ8 A;  3GUA A;  2PGZ A;  5AFN A;  2XQA A;  4QH1 A;  4IRE A;  2X00 A;  2YMD A;  5AFL A;  5L4H A;  3LSV A;  4UM3 P;  4AFT A;  4ZK1 A;  4UM1 A;  5L47 A;  3C84 A;  3WIP A;  4A97 A;  4HFC A;  4BQT A;  3RHW A;  2Y58 A;  3C79 A;  3EHZ A;  2XQ3 A;  4QAC A;  4TNW A;  3UU3 A;  2BG9 A;  5AFH A;  4HQP A;  3RIA A;  2BR7 A;  2XQ7 A;  2BJ0 A;  3WTL A;  5HCJ A;  2BG9 B;  5BP0 A;  4LMK A;  4ILC A;  3WTI A;  2X00 D;  3WTN A;  2BYR A;  4QAA A;  5J5F A;  4HFB A;  2UZ6 A;  2YOE A;  4F8H A;  3RI5 A;  4B5D A;  4ZZC A;  4D01 A;  3EI0 A;  4Z91 A;  4ZRU A;  3RQU A;  4TWD A;  3U8K A;  2BR8 A;  5HEO A;  3RQW A;  1I9B A;  2Y56 A;  2YME A;  3U8L A;  4IL4 A;  2WN9 A;  3WTH A;  4TNV A;  5LXB A;  3UU8 A;  2QC1 B;  3ZKR A;  2WZY A;  4DBM A;  4HFD A;  4ALX A;  3PMZ A;  2WNC A;  3SIO A;  2Y7Y A;  3UU6 A;  3WTJ A;  2VL0 A;  2XNT A;  5KZU A;  3EAM A;  4XHE A;  1UW6 A;  2Y54 A;  4BFQ A;  2W8F A;  3UUB A;  5HEJ A;  4ZJS A;  3PEO A;  5HCM A;  5J5G A;  2YKS A;  3SQ9 A;  2XQ6 A;  5HEH A;  2XQ5 A;  2ZJV A;  3JAF A;  4QH5 A;  2BYP A;  2XNV A;  3WTM A;  4TWH A;  4QAB A;  5LG3 A;  4LML A;  5AFM B;  5IUX A;  2XYS A;  2W8G A;  3IGQ A;  4UM3 A;  3UU4 A;  4UY2 A;  5AFK A;  2XQ4 A;  2XZ5 A;  3T4M A;  3SH1 A;  4X5T A;  5BRX A;  2BG9 E;  5FJV A;  5AFJ A;  4ZJT A;  3U8N A;  3JAE A;  3JAD A;  4Z90 A;  3ZDG A;  3TLT A;  2XQ9 A;  3WTO A;  4ILB A;  5CFB A;  1UX2 A;  5J5I A;  5L4E A;  3U8J A;  1UV6 A;  2BYQ A;  2Y57 A;  3WTK A;  4COF A;  3P50 A;  3UQ4 A;  5KE4 A;  2YN6 A;  4ZK4 A;  3TLU A;  2PH9 A;  5AFM A;  5BW2 A;  4UXU A;  3U8M A;  4NZB A;  4FRR A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...