3WTVB

Crystal structure of the complex comprised of ets1(v170g), runx1, cbfbeta, and the tcralpha gene enhancer dna
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
139
structure length
130
Chain Sequence
PRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIAFVATGTNLSLQFFPAPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLHRLDGMGCLEFDEERAQQEDALAQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords Runt-related transcription factor 1
publication title A novel allosteric mechanism on protein-DNA interactions underlying the phosphorylation-dependent regulation of Ets1 target gene expressions
pubmed doi rcsb
source organism Mus musculus
total genus 35
structure length 130
sequence length 139
chains with identical sequence G
ec nomenclature
pdb deposition date 2014-04-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.250.10 Mainly Beta Beta Barrel Polyomavirus Enhancer Binding Protein 2; Chain: A; Core binding factor, beta subunit 3wtvB00
1H9DB 1IO4D 3WTSB 1CL3A 3WTYB 1E50B 2JHBA 3WTUB 4N9F0 3WTTB 3WTVB 3WTWB 1ILFA 3WTXB
chains in the Genus database with same CATH superfamily
1H9DB 1IO4D 3WTSB 1CL3A 3WTYB 1E50B 2JHBA 3WTUB 4N9F0 3WTTB 3WTVB 3WTWB 1ILFA 3WTXB
chains in the Genus database with same CATH topology
1H9DB 1IO4D 3WTSB 1CL3A 3WTYB 1E50B 2JHBA 3WTUB 4N9F0 3WTTB 3WTVB 3WTWB 1ILFA 3WTXB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H9D B;  1IO4 D;  3WTS B;  1CL3 A;  3WTY B;  1E50 B;  2JHB A;  3WTU B;  4N9F 0;  3WTT B;  3WTV B;  3WTW B;  1ILF A;  3WTX B; 
#chains in the Genus database with same CATH topology
 1H9D B;  1IO4 D;  3WTS B;  1CL3 A;  3WTY B;  1E50 B;  2JHB A;  3WTU B;  4N9F 0;  3WTT B;  3WTV B;  3WTW B;  1ILF A;  3WTX B; 
#chains in the Genus database with same CATH homology
 1H9D B;  1IO4 D;  3WTS B;  1CL3 A;  3WTY B;  1E50 B;  2JHB A;  3WTU B;  4N9F 0;  3WTT B;  3WTV B;  3WTW B;  1ILF A;  3WTX B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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