3WVGA

Time-resolved crystal structure of hindiii with 0sec soaking
Total Genus 117
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
298
structure length
298
Chain Sequence
KSALEKLLSLIENLTNQEFKQATNSLISFIYKLNRNEVIELVRSIGILPEAIKPSSTQEKLFSKAGDIVLAKAFQLLNLNSKPLEQRGNAGDVIALSKEFNYGLVADAKSFRLSRTAKNQKDFKVKALSEWREDKDYAVLTAPFFQYPTTKSQIFKQSLDENVLLFSWEHLAILLQLDLEETNIFSFEQLWNFPKKQSKKTSVSDAENNFMRDFNKYFMDLFKIDKDTLNQLLQKEINFIEERSLIEKEYWKKQINIIKNFTREEAIEALLKDINMSSKIETIDSFIKGIKSNDRLYL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords Type-2 restriction enzyme HindIII
publication title Analysis of the HindIII-catalyzed reaction by time-resolved crystallography
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 117
structure length 298
sequence length 298
chains with identical sequence B, C, D
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2014-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09518 RE_HindIII HindIII restriction endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.70 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 3wvgA01
3WVHA 3WVPA 3WVKA 3WVGA 3A4KA 2E52A 3WVIA
chains in the Genus database with same CATH superfamily
4E5HA 5CGVA 4CHCA 1M0IA 4E5LA 4F0QA 5CCYA 3DPGA 5D8UA 5JHTA 2P14A 5JHVA 4E5FA 4NFZA 4AVQA 5DBSA 4ZI0A 3HW4A 5D2OA 1DC1A 3V20A 2GB7A 3ODHA 4ZQQA 2BAMA 4E5GA 5D9JA 2XI5A 4ZHZA 2E52A 3BAMA 5D4GA 5DEBA 5FDGA 5D42A 4AWKA 1CFRA 4OC8A 5CL0A 2PFJA 1KNVA 3WVPA 3DW9A 2EWFA 4AWMA 5FDDA 4F0PA 2P0JA 3V21A 1ESGA 3HW5A 4CGXA 3MQYA 5DESA 3WVIA 1D2IA 4E5JA 4AWFA 1BAMA 4AWHA 1FOKA 3MQ6A 4YYLA 5EGAA 1M0DA 3HW6A 1DFMA 2FQZA 2XI7A 4CGSA 3CAEA 3WVHA 4E5EA 3N7BA 3A4KA 3HW3A 3BM3A 2FOKA 5CZNA 4AVLA 4AWGA 1BHMA 3N78A 5I13A 1SDOA 3DVOA 4R28A 3WVKA 3WVGA 4AVGA 4E5IA 3V1ZA 1VRRA 1ES8A 1FZRA 3EBJA
chains in the Genus database with same CATH topology
4E5HA 5CGVA 4CHCA 1M0IA 4E5LA 4F0QA 5CCYA 3DPGA 5D8UA 5JHTA 2P14A 5JHVA 4E5FA 4NFZA 4AVQA 5DBSA 4ZI0A 3HW4A 5D2OA 1DC1A 3V20A 2GB7A 3ODHA 4ZQQA 2BAMA 4E5GA 5D9JA 2XI5A 4ZHZA 2E52A 3BAMA 5D4GA 5DEBA 5FDGA 5D42A 4AWKA 1CFRA 4OC8A 5CL0A 2PFJA 1KNVA 3WVPA 3DW9A 2EWFA 4AWMA 5FDDA 4F0PA 2P0JA 3V21A 1ESGA 3HW5A 4CGXA 3MQYA 5DESA 3WVIA 1D2IA 4E5JA 4AWFA 1BAMA 4AWHA 1FOKA 3MQ6A 4YYLA 5EGAA 1M0DA 3HW6A 1DFMA 2FQZA 2XI7A 4CGSA 3CAEA 3WVHA 4E5EA 3N7BA 3A4KA 3HW3A 3BM3A 2FOKA 5CZNA 4AVLA 4AWGA 1BHMA 3N78A 5I13A 1SDOA 3DVOA 4R28A 3WVKA 3WVGA 4AVGA 4E5IA 3V1ZA 1VRRA 1ES8A 1FZRA 3EBJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WVH A;  3WVP A;  3WVK A;  3WVG A;  3A4K A;  2E52 A;  3WVI A; 
#chains in the Genus database with same CATH topology
 4E5H A;  5CGV A;  4CHC A;  1M0I A;  4E5L A;  4F0Q A;  5CCY A;  3DPG A;  5D8U A;  5JHT A;  2P14 A;  5JHV A;  4E5F A;  4NFZ A;  4AVQ A;  5DBS A;  4ZI0 A;  3HW4 A;  5D2O A;  1DC1 A;  3V20 A;  2GB7 A;  3ODH A;  4ZQQ A;  2BAM A;  4E5G A;  5D9J A;  2XI5 A;  4ZHZ A;  2E52 A;  3BAM A;  5D4G A;  5DEB A;  5FDG A;  5D42 A;  4AWK A;  1CFR A;  4OC8 A;  5CL0 A;  2PFJ A;  1KNV A;  3WVP A;  3DW9 A;  2EWF A;  4AWM A;  5FDD A;  4F0P A;  2P0J A;  3V21 A;  1ESG A;  3HW5 A;  4CGX A;  3MQY A;  5DES A;  3WVI A;  1D2I A;  4E5J A;  4AWF A;  1BAM A;  4AWH A;  1FOK A;  3MQ6 A;  4YYL A;  5EGA A;  1M0D A;  3HW6 A;  1DFM A;  2FQZ A;  2XI7 A;  4CGS A;  3CAE A;  3WVH A;  4E5E A;  3N7B A;  3A4K A;  3HW3 A;  3BM3 A;  2FOK A;  5CZN A;  4AVL A;  4AWG A;  1BHM A;  3N78 A;  5I13 A;  1SDO A;  3DVO A;  4R28 A;  3WVK A;  3WVG A;  4AVG A;  4E5I A;  3V1Z A;  1VRR A;  1ES8 A;  1FZR A;  3EBJ A; 
#chains in the Genus database with same CATH homology
 4E5H A;  5CGV A;  4CHC A;  1M0I A;  4E5L A;  4F0Q A;  5CCY A;  3DPG A;  5D8U A;  5JHT A;  2P14 A;  5JHV A;  4E5F A;  4NFZ A;  4AVQ A;  5DBS A;  4ZI0 A;  3HW4 A;  5D2O A;  1DC1 A;  3V20 A;  2GB7 A;  3ODH A;  4ZQQ A;  2BAM A;  4E5G A;  5D9J A;  2XI5 A;  4ZHZ A;  2E52 A;  3BAM A;  5D4G A;  5DEB A;  5FDG A;  5D42 A;  4AWK A;  1CFR A;  4OC8 A;  5CL0 A;  2PFJ A;  1KNV A;  3WVP A;  3DW9 A;  2EWF A;  4AWM A;  5FDD A;  4F0P A;  2P0J A;  3V21 A;  1ESG A;  3HW5 A;  4CGX A;  3MQY A;  5DES A;  3WVI A;  1D2I A;  4E5J A;  4AWF A;  1BAM A;  4AWH A;  1FOK A;  3MQ6 A;  4YYL A;  5EGA A;  1M0D A;  3HW6 A;  1DFM A;  2FQZ A;  2XI7 A;  4CGS A;  3CAE A;  3WVH A;  4E5E A;  3N7B A;  3A4K A;  3HW3 A;  3BM3 A;  2FOK A;  5CZN A;  4AVL A;  4AWG A;  1BHM A;  3N78 A;  5I13 A;  1SDO A;  3DVO A;  4R28 A;  3WVK A;  3WVG A;  4AVG A;  4E5I A;  3V1Z A;  1VRR A;  1ES8 A;  1FZR A;  3EBJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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