3WX1A

Mouse cereblon thalidomide binding domain, selenomethionine derivative
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
108
structure length
108
Chain Sequence
GPTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETLTVYKASNLNLIGRPSTVHSWFPGYAWTIAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Metal binding protein
molecule keywords Protein cereblon
publication title Structure of the human Cereblon-DDB1-lenalidomide complex reveals basis for responsiveness to thalidomide analogs
pubmed doi rcsb
source organism Mus musculus
total genus 21
structure length 108
sequence length 108
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-07-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.20 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Peptide methionine sulfoxide reductase. 3wx1A00
5AMHA 3HCJA 4CI1B 3HCHA 4CI2B 3HCIA 3E0MA 2K8DA 3CEZA 4V31A 3E0OA 4V2YA 4TZ4C 4V2ZA 3HCGA 2KZNA 3MAOA 4TZCA 4CI3B 3WX2A 1L1DA 4V30A 3CXKA 3WX1A 4TZUA 2KV1A
chains in the Genus database with same CATH superfamily
5AMHA 3FACA 3HCJA 3OG8A 2FU5A 4CI1B 2RQAA 5E3HA 3HCHA 4CI2B 3HCIA 5F9HA 3E0MA 1H6QA 4AY2A 1YZ1A 2RMJA 2RQBA 2K8DA 2KV1A 1TXJA 5F98A 3ZD7A 2QFDA 2YKGA 1FWQA 3CEZA 4V31A 3E0OA 4V2YA 4TZ4C 4V2ZA 2HR9A 3GA3A 4BPBA 3P3KA 2KWBA 3NCUA 4A2XA 3HCGA 3EBMA 3ZD6A 2LVLA 2KZNA 3MAOA 4TZCA 4A2VA 2W4RA 3LRNA 3EQTA 5F9FA 1HXRA 2QFBA 3WX2A 1L1DA 4V30A 4CI3B 1H7YA 3DJMA 3CXKA 3WX1A 3LRRA 4TZUA 2LOYA
chains in the Genus database with same CATH topology
5AMHA 3HCJA 4CI1B 3HCHA 4CI2B 3HCIA 3E0MA 2K8DA 3CEZA 4V31A 3E0OA 4V2YA 4TZ4C 4V2ZA 3HCGA 2KZNA 3MAOA 4TZCA 4CI3B 3WX2A 1L1DA 4V30A 3CXKA 3WX1A 4TZUA 2KV1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AMH A;  3HCJ A;  4CI1 B;  3HCH A;  4CI2 B;  3HCI A;  3E0M A;  2K8D A;  3CEZ A;  4V31 A;  3E0O A;  4V2Y A;  4TZ4 C;  4V2Z A;  3HCG A;  2KZN A;  3MAO A;  4TZC A;  4CI3 B;  3WX2 A;  1L1D A;  4V30 A;  3CXK A;  3WX1 A;  4TZU A;  2KV1 A; 
#chains in the Genus database with same CATH topology
 5AMH A;  3FAC A;  3HCJ A;  3OG8 A;  2FU5 A;  4CI1 B;  2RQA A;  5E3H A;  3HCH A;  4CI2 B;  3HCI A;  5F9H A;  3E0M A;  1H6Q A;  4AY2 A;  1YZ1 A;  2RMJ A;  2RQB A;  2K8D A;  2KV1 A;  1TXJ A;  5F98 A;  3ZD7 A;  2QFD A;  2YKG A;  1FWQ A;  3CEZ A;  4V31 A;  3E0O A;  4V2Y A;  4TZ4 C;  4V2Z A;  2HR9 A;  3GA3 A;  4BPB A;  3P3K A;  2KWB A;  3NCU A;  4A2X A;  3HCG A;  3EBM A;  3ZD6 A;  2LVL A;  2KZN A;  3MAO A;  4TZC A;  4A2V A;  2W4R A;  3LRN A;  3EQT A;  5F9F A;  1HXR A;  2QFB A;  3WX2 A;  1L1D A;  4V30 A;  4CI3 B;  1H7Y A;  3DJM A;  3CXK A;  3WX1 A;  3LRR A;  4TZU A;  2LOY A; 
#chains in the Genus database with same CATH homology
 5AMH A;  3HCJ A;  4CI1 B;  3HCH A;  4CI2 B;  3HCI A;  3E0M A;  2K8D A;  3CEZ A;  4V31 A;  3E0O A;  4V2Y A;  4TZ4 C;  4V2Z A;  3HCG A;  2KZN A;  3MAO A;  4TZC A;  4CI3 B;  3WX2 A;  1L1D A;  4V30 A;  3CXK A;  3WX1 A;  4TZU A;  2KV1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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