3WZXA

S266a mutant 3-isopropylmalate dehydrogenase from shewanella oneidensis mr-1 at 0.1mpa - complex with ipm and mg
Total Genus 128
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
364
structure length
364
Chain Sequence
SSYQIAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGCEAADAILFGSVGGPKWEKLPPNEQPERGALLPLRGHFELFCNLRPAKLHDGLEHMSPLRSDISARGFDVLCVRELTGGIYFGKPKGRQGEGESEEAFDTMRYSRREISRIARIAFEAARGRRKKVTSVDKANVLACSVLWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIAMLTGSMGLLASASMNSTGFGLFEPAGGSAPDIAGKGIANPIAQILSAALMLRHSLKQEEAASAIERAVTKALNSGYLTGELLSSDQRHKAKTTVQMGDFIADAVKAGV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
molecule keywords 3-isopropylmalate dehydrogenase
publication title Pressure Adaptation of 3-Isopropylmalate Dehydrogenase from the Extremely Piezophilic Bacterium Shewanella benthica is Attributed to just One Amino Acid Substitution
rcsb
source organism Shewanella oneidensis mr-1
total genus 128
structure length 364
sequence length 364
ec nomenclature ec 1.1.1.85: 3-isopropylmalate dehydrogenase.
pdb deposition date 2014-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 3wzxA00
3MASB 5GRHB 3INMA 1CW1A 1CW4A 4ATYA 1XABA 3VL4A 1X0LA 2Y40A 5GRIB 1HJ6A 3VMLA 5HN3A 1W0DA 1YXOA 1CNZA 1LWDA 1DPZA 9ICDA 2D1CA 3VMJA 4I3LA 2HI1A 2UXRA 3MARA 3BLXA 2ZTWA 4AJRA 3ASJA 1AI2A 3VL2A 5ICDA 1HEXA 3LXYA 3WZXA 2AYQA 1P8FA 3VL7A 1V53A 4I3KA 3TSNA 4AOUA 5K11A 3TY3A 4L04A 1WPWA 3VMKA 1DR8A 1YCOA 3WZYA 2G4OA 4UMXA 4YB4A 1OSJA 5GRLA 5HN5A 3DMSA 1GRPA 3U1HA 1PS7A 5GREB 2QFYA 1IDCA 4AJCA 4AOVA 1GC8A 1IDEA 1PTMA 4XXVA 4BNPA 4AJBA 7ICDA 1IDDA 1PS6A 3MAPA 4AJ3A 2E0CA 5I96A 2IV0A 1WALA 1XKDA 3WZWA 1CM7A 5HN6A 4P69C 5LGEA 1GROA 1VLCA 3UDOA 4XS3A 1SJSA 5GRFA 3UF6A 1XACA 2QFVA 1GC9A 2DHTA 1A05A 1VI1A 1XAAA 1R8KA 4AJSA 2Y3ZA 4F7IA 3BLVA 1IDFA 1T0LA 1PB3A 1U7NA 4L03A 3FLKA 1AI3A 3MASA 4UMYA 5DE1A 3ICDA 5GRHA 3WZVA 4L06A 1G2UA 1XADA 5I95A 3AH3A 4AJAA 2D4VA 5K10A 5L58A 4IWHA 5GRIA 5GREA 2QFXA 4HCXA 4JQPA 3U9EA 2QFWA 5L57A 1V94A 5HN4A 1CW7A 1TYOA 5J34A 1ZORA 4AOYA 1T09A 2Y42A 3VKZA 3BLXB 4KZOA 1XGVA 1IPDA 5J33A 3R8WA 1OSIA 6ICDA 3UDUA 1V5BA 4WUOA 1PB1A 8ICDA 5GRFB 4Y1PA 3VL6A 4JA8A 4XRXA 1DR0A 3LCBC 5J32A 1ISOA 3FMXX 5GRLB 1HQSA 3TNGA 3VL3A 3US8A 1IDMA 1BL5A 2E5MA 4ICDA 1IKAA 2Y41A 3BLVB 2UXQA 3TY4A
chains in the Genus database with same CATH superfamily
3MASB 5GRHB 3INMA 1CW1A 1CW4A 4ATYA 1XABA 3VL4A 1X0LA 2Y40A 5GRIB 1HJ6A 3VMLA 5HN3A 1W0DA 1YXOA 1CNZA 1LWDA 1DPZA 9ICDA 2D1CA 3VMJA 4I3LA 2HI1A 2UXRA 3MARA 3BLXA 2ZTWA 4AJRA 3ASJA 1AI2A 3VL2A 5ICDA 1HEXA 3LXYA 3WZXA 2AYQA 1P8FA 3VL7A 1V53A 4I3KA 3TSNA 4AOUA 5K11A 3TY3A 4L04A 1WPWA 3VMKA 1DR8A 1YCOA 3WZYA 2G4OA 4UMXA 4YB4A 1OSJA 5GRLA 5HN5A 3DMSA 1GRPA 3U1HA 1PS7A 5GREB 2QFYA 1IDCA 4AJCA 4AOVA 1GC8A 1IDEA 1PTMA 4XXVA 4BNPA 4AJBA 7ICDA 1IDDA 1PS6A 3MAPA 4AJ3A 2E0CA 5I96A 2IV0A 1WALA 1XKDA 3WZWA 1CM7A 5HN6A 4P69C 5LGEA 1GROA 1VLCA 3UDOA 4XS3A 1SJSA 5GRFA 3UF6A 1XACA 2QFVA 1GC9A 2DHTA 1A05A 1VI1A 1XAAA 1R8KA 4AJSA 2Y3ZA 4F7IA 3BLVA 1IDFA 1T0LA 1PB3A 1U7NA 4L03A 3FLKA 1AI3A 3MASA 4UMYA 5DE1A 3ICDA 5GRHA 3WZVA 4L06A 1G2UA 1XADA 5I95A 3AH3A 4AJAA 2D4VA 5K10A 5L58A 4IWHA 5GRIA 5GREA 2QFXA 4HCXA 4JQPA 3U9EA 2QFWA 5L57A 1V94A 5HN4A 1CW7A 1TYOA 5J34A 1ZORA 4AOYA 1T09A 2Y42A 3VKZA 3BLXB 4KZOA 1XGVA 1IPDA 5J33A 3R8WA 1OSIA 6ICDA 3UDUA 1V5BA 4WUOA 1PB1A 8ICDA 5GRFB 4Y1PA 3VL6A 4JA8A 4XRXA 1DR0A 3LCBC 5J32A 1ISOA 3FMXX 5GRLB 1HQSA 3TNGA 3VL3A 3US8A 1IDMA 1BL5A 2E5MA 4ICDA 1IKAA 2Y41A 3BLVB 2UXQA 3TY4A
chains in the Genus database with same CATH topology
3MASB 5GRHB 3INMA 1CW1A 1CW4A 4ATYA 1XABA 3VL4A 1X0LA 2Y40A 5GRIB 1HJ6A 3VMLA 5HN3A 1W0DA 1YXOA 1CNZA 1LWDA 1DPZA 9ICDA 2D1CA 3VMJA 4I3LA 2HI1A 2UXRA 3MARA 3BLXA 2ZTWA 4AJRA 3ASJA 1AI2A 3VL2A 5ICDA 1HEXA 3LXYA 3WZXA 2AYQA 1P8FA 3VL7A 1V53A 4I3KA 3TSNA 4AOUA 5K11A 3TY3A 4L04A 1WPWA 3VMKA 1DR8A 1YCOA 3WZYA 2G4OA 4UMXA 4YB4A 1OSJA 5GRLA 5HN5A 3DMSA 1GRPA 3U1HA 1PS7A 5GREB 2QFYA 1IDCA 4AJCA 4AOVA 1GC8A 1IDEA 1PTMA 4XXVA 4BNPA 4AJBA 7ICDA 1IDDA 1PS6A 3MAPA 4AJ3A 2E0CA 5I96A 2IV0A 1WALA 1XKDA 3WZWA 1CM7A 5HN6A 4P69C 5LGEA 1GROA 1VLCA 3UDOA 4XS3A 1SJSA 5GRFA 3UF6A 1XACA 2QFVA 1GC9A 2DHTA 1A05A 1VI1A 1XAAA 1R8KA 4AJSA 2Y3ZA 4F7IA 3BLVA 1IDFA 1T0LA 1PB3A 1U7NA 4L03A 3FLKA 1AI3A 3MASA 4UMYA 5DE1A 3ICDA 5GRHA 3WZVA 4L06A 1G2UA 1XADA 5I95A 3AH3A 4AJAA 2D4VA 5K10A 5L58A 4IWHA 5GRIA 5GREA 2QFXA 4HCXA 4JQPA 3U9EA 2QFWA 5L57A 1V94A 5HN4A 1CW7A 1TYOA 5J34A 1ZORA 4AOYA 1T09A 2Y42A 3VKZA 3BLXB 4KZOA 1XGVA 1IPDA 5J33A 3R8WA 1OSIA 6ICDA 3UDUA 1V5BA 4WUOA 1PB1A 8ICDA 5GRFB 4Y1PA 3VL6A 4JA8A 4XRXA 1DR0A 3LCBC 5J32A 1ISOA 3FMXX 5GRLB 1HQSA 3TNGA 3VL3A 3US8A 1IDMA 1BL5A 2E5MA 4ICDA 1IKAA 2Y41A 3BLVB 2UXQA 3TY4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MAS B;  5GRH B;  3INM A;  1CW1 A;  1CW4 A;  4ATY A;  1XAB A;  3VL4 A;  1X0L A;  2Y40 A;  5GRI B;  1HJ6 A;  3VML A;  5HN3 A;  1W0D A;  1YXO A;  1CNZ A;  1LWD A;  1DPZ A;  9ICD A;  2D1C A;  3VMJ A;  4I3L A;  2HI1 A;  2UXR A;  3MAR A;  3BLX A;  2ZTW A;  4AJR A;  3ASJ A;  1AI2 A;  3VL2 A;  5ICD A;  1HEX A;  3LXY A;  3WZX A;  2AYQ A;  1P8F A;  3VL7 A;  1V53 A;  4I3K A;  3TSN A;  4AOU A;  5K11 A;  3TY3 A;  4L04 A;  1WPW A;  3VMK A;  1DR8 A;  1YCO A;  3WZY A;  2G4O A;  4UMX A;  4YB4 A;  1OSJ A;  5GRL A;  5HN5 A;  3DMS A;  1GRP A;  3U1H A;  1PS7 A;  5GRE B;  2QFY A;  1IDC A;  4AJC A;  4AOV A;  1GC8 A;  1IDE A;  1PTM A;  4XXV A;  4BNP A;  4AJB A;  7ICD A;  1IDD A;  1PS6 A;  3MAP A;  4AJ3 A;  2E0C A;  5I96 A;  2IV0 A;  1WAL A;  1XKD A;  3WZW A;  1CM7 A;  5HN6 A;  4P69 C;  5LGE A;  1GRO A;  1VLC A;  3UDO A;  4XS3 A;  1SJS A;  5GRF A;  3UF6 A;  1XAC A;  2QFV A;  1GC9 A;  2DHT A;  1A05 A;  1VI1 A;  1XAA A;  1R8K A;  4AJS A;  2Y3Z A;  4F7I A;  3BLV A;  1IDF A;  1T0L A;  1PB3 A;  1U7N A;  4L03 A;  3FLK A;  1AI3 A;  3MAS A;  4UMY A;  5DE1 A;  3ICD A;  5GRH A;  3WZV A;  4L06 A;  1G2U A;  1XAD A;  5I95 A;  3AH3 A;  4AJA A;  2D4V A;  5K10 A;  5L58 A;  4IWH A;  5GRI A;  5GRE A;  2QFX A;  4HCX A;  4JQP A;  3U9E A;  2QFW A;  5L57 A;  1V94 A;  5HN4 A;  1CW7 A;  1TYO A;  5J34 A;  1ZOR A;  4AOY A;  1T09 A;  2Y42 A;  3VKZ A;  3BLX B;  4KZO A;  1XGV A;  1IPD A;  5J33 A;  3R8W A;  1OSI A;  6ICD A;  3UDU A;  1V5B A;  4WUO A;  1PB1 A;  8ICD A;  5GRF B;  4Y1P A;  3VL6 A;  4JA8 A;  4XRX A;  1DR0 A;  3LCB C;  5J32 A;  1ISO A;  3FMX X;  5GRL B;  1HQS A;  3TNG A;  3VL3 A;  3US8 A;  1IDM A;  1BL5 A;  2E5M A;  4ICD A;  1IKA A;  2Y41 A;  3BLV B;  2UXQ A;  3TY4 A; 
#chains in the Genus database with same CATH topology
 3MAS B;  5GRH B;  3INM A;  1CW1 A;  1CW4 A;  4ATY A;  1XAB A;  3VL4 A;  1X0L A;  2Y40 A;  5GRI B;  1HJ6 A;  3VML A;  5HN3 A;  1W0D A;  1YXO A;  1CNZ A;  1LWD A;  1DPZ A;  9ICD A;  2D1C A;  3VMJ A;  4I3L A;  2HI1 A;  2UXR A;  3MAR A;  3BLX A;  2ZTW A;  4AJR A;  3ASJ A;  1AI2 A;  3VL2 A;  5ICD A;  1HEX A;  3LXY A;  3WZX A;  2AYQ A;  1P8F A;  3VL7 A;  1V53 A;  4I3K A;  3TSN A;  4AOU A;  5K11 A;  3TY3 A;  4L04 A;  1WPW A;  3VMK A;  1DR8 A;  1YCO A;  3WZY A;  2G4O A;  4UMX A;  4YB4 A;  1OSJ A;  5GRL A;  5HN5 A;  3DMS A;  1GRP A;  3U1H A;  1PS7 A;  5GRE B;  2QFY A;  1IDC A;  4AJC A;  4AOV A;  1GC8 A;  1IDE A;  1PTM A;  4XXV A;  4BNP A;  4AJB A;  7ICD A;  1IDD A;  1PS6 A;  3MAP A;  4AJ3 A;  2E0C A;  5I96 A;  2IV0 A;  1WAL A;  1XKD A;  3WZW A;  1CM7 A;  5HN6 A;  4P69 C;  5LGE A;  1GRO A;  1VLC A;  3UDO A;  4XS3 A;  1SJS A;  5GRF A;  3UF6 A;  1XAC A;  2QFV A;  1GC9 A;  2DHT A;  1A05 A;  1VI1 A;  1XAA A;  1R8K A;  4AJS A;  2Y3Z A;  4F7I A;  3BLV A;  1IDF A;  1T0L A;  1PB3 A;  1U7N A;  4L03 A;  3FLK A;  1AI3 A;  3MAS A;  4UMY A;  5DE1 A;  3ICD A;  5GRH A;  3WZV A;  4L06 A;  1G2U A;  1XAD A;  5I95 A;  3AH3 A;  4AJA A;  2D4V A;  5K10 A;  5L58 A;  4IWH A;  5GRI A;  5GRE A;  2QFX A;  4HCX A;  4JQP A;  3U9E A;  2QFW A;  5L57 A;  1V94 A;  5HN4 A;  1CW7 A;  1TYO A;  5J34 A;  1ZOR A;  4AOY A;  1T09 A;  2Y42 A;  3VKZ A;  3BLX B;  4KZO A;  1XGV A;  1IPD A;  5J33 A;  3R8W A;  1OSI A;  6ICD A;  3UDU A;  1V5B A;  4WUO A;  1PB1 A;  8ICD A;  5GRF B;  4Y1P A;  3VL6 A;  4JA8 A;  4XRX A;  1DR0 A;  3LCB C;  5J32 A;  1ISO A;  3FMX X;  5GRL B;  1HQS A;  3TNG A;  3VL3 A;  3US8 A;  1IDM A;  1BL5 A;  2E5M A;  4ICD A;  1IKA A;  2Y41 A;  3BLV B;  2UXQ A;  3TY4 A; 
#chains in the Genus database with same CATH homology
 3MAS B;  5GRH B;  3INM A;  1CW1 A;  1CW4 A;  4ATY A;  1XAB A;  3VL4 A;  1X0L A;  2Y40 A;  5GRI B;  1HJ6 A;  3VML A;  5HN3 A;  1W0D A;  1YXO A;  1CNZ A;  1LWD A;  1DPZ A;  9ICD A;  2D1C A;  3VMJ A;  4I3L A;  2HI1 A;  2UXR A;  3MAR A;  3BLX A;  2ZTW A;  4AJR A;  3ASJ A;  1AI2 A;  3VL2 A;  5ICD A;  1HEX A;  3LXY A;  3WZX A;  2AYQ A;  1P8F A;  3VL7 A;  1V53 A;  4I3K A;  3TSN A;  4AOU A;  5K11 A;  3TY3 A;  4L04 A;  1WPW A;  3VMK A;  1DR8 A;  1YCO A;  3WZY A;  2G4O A;  4UMX A;  4YB4 A;  1OSJ A;  5GRL A;  5HN5 A;  3DMS A;  1GRP A;  3U1H A;  1PS7 A;  5GRE B;  2QFY A;  1IDC A;  4AJC A;  4AOV A;  1GC8 A;  1IDE A;  1PTM A;  4XXV A;  4BNP A;  4AJB A;  7ICD A;  1IDD A;  1PS6 A;  3MAP A;  4AJ3 A;  2E0C A;  5I96 A;  2IV0 A;  1WAL A;  1XKD A;  3WZW A;  1CM7 A;  5HN6 A;  4P69 C;  5LGE A;  1GRO A;  1VLC A;  3UDO A;  4XS3 A;  1SJS A;  5GRF A;  3UF6 A;  1XAC A;  2QFV A;  1GC9 A;  2DHT A;  1A05 A;  1VI1 A;  1XAA A;  1R8K A;  4AJS A;  2Y3Z A;  4F7I A;  3BLV A;  1IDF A;  1T0L A;  1PB3 A;  1U7N A;  4L03 A;  3FLK A;  1AI3 A;  3MAS A;  4UMY A;  5DE1 A;  3ICD A;  5GRH A;  3WZV A;  4L06 A;  1G2U A;  1XAD A;  5I95 A;  3AH3 A;  4AJA A;  2D4V A;  5K10 A;  5L58 A;  4IWH A;  5GRI A;  5GRE A;  2QFX A;  4HCX A;  4JQP A;  3U9E A;  2QFW A;  5L57 A;  1V94 A;  5HN4 A;  1CW7 A;  1TYO A;  5J34 A;  1ZOR A;  4AOY A;  1T09 A;  2Y42 A;  3VKZ A;  3BLX B;  4KZO A;  1XGV A;  1IPD A;  5J33 A;  3R8W A;  1OSI A;  6ICD A;  3UDU A;  1V5B A;  4WUO A;  1PB1 A;  8ICD A;  5GRF B;  4Y1P A;  3VL6 A;  4JA8 A;  4XRX A;  1DR0 A;  3LCB C;  5J32 A;  1ISO A;  3FMX X;  5GRL B;  1HQS A;  3TNG A;  3VL3 A;  3US8 A;  1IDM A;  1BL5 A;  2E5M A;  4ICD A;  1IKA A;  2Y41 A;  3BLV B;  2UXQ A;  3TY4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...