3WZYA

S266a mutant 3-isopropylmalate dehydrogenase from shewanella oneidensis mr-1 at 580mpa - complex with ipm and mg
Total Genus 129
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
129
sequence length
364
structure length
364
Chain Sequence
SSYQIAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGCEAADAILFGSVGGPKWEKLPPNEQPERGALLPLRGHFELFCNLRPAKLHDGLEHMSPLRSDISARGFDVLCVRELTGGIYFGKPKGRQGEGESEEAFDTMRYSRREISRIARIAFEAARGRRKKVTSVDKANVLACSVLWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIAMLTGSMGLLASASMNSTGFGLFEPAGGSAPDIAGKGIANPIAQILSAALMLRHSLKQEEAASAIERAVTKALNSGYLTGELLSSDQRHKAKTTVQMGDFIADAVKAGV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords 3-isopropylmalate dehydrogenase
publication title Pressure Adaptation of 3-Isopropylmalate Dehydrogenase from the Extremely Piezophilic Bacterium Shewanella benthica is Attributed to just One Amino Acid Substitution
rcsb
source organism Shewanella oneidensis mr-1
total genus 129
structure length 364
sequence length 364
ec nomenclature ec 1.1.1.85: 3-isopropylmalate dehydrogenase.
pdb deposition date 2014-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 3wzyA00
1DR8A 3UF6A 5ICDA 1X0LA 3UDUA 1GC9A 5LGEA 1OSJA 1IDCA 4AJAA 3MASA 1A05A 3VL2A 8ICDA 3ASJA 1IKAA 1XGVA 1PTMA 2D1CA 5HN6A 4WUOA 2UXQA 3TY3A 3VL4A 4I3KA 5K11A 1CW4A 4L04A 5GRLB 1IPDA 3UDOA 4BNPA 4AJRA 1XACA 4AOUA 3BLXB 4ICDA 2Y41A 3DMSA 1XAAA 1G2UA 2D4VA 4JQPA 4IWHA 3BLVA 1SJSA 5HN3A 1PB3A 3TSNA 2QFVA 2G4OA 2ZTWA 5I95A 1GC8A 1PB1A 1W0DA 1XABA 5GRFB 1CW1A 2QFXA 1ISOA 1IDMA 1HEXA 4Y1PA 4YB4A 1CNZA 1P8FA 5HN4A 3INMA 2QFYA 2DHTA 3FMXX 3R8WA 1V53A 3BLVB 4L03A 3MAPA 3WZWA 2Y40A 9ICDA 1V94A 4AOYA 4AJCA 1DR0A 3TNGA 1TYOA 3MASB 5J33A 2IV0A 5GRIA 1T09A 1IDEA 1U7NA 4KZOA 1LWDA 3WZVA 3VMLA 1WPWA 1VLCA 3MARA 1AI3A 5I96A 4XRXA 1YXOA 1XKDA 3AH3A 5DE1A 3VL3A 1IDDA 3VMJA 4P69C 4UMXA 3VL7A 4L06A 5HN5A 3US8A 3LCBC 1GRPA 1CW7A 1HJ6A 1YCOA 4AJ3A 1IDFA 1PS6A 2E5MA 1VI1A 5GRLA 4XXVA 5GREA 1OSIA 3WZXA 4F7IA 2HI1A 3BLXA 1BL5A 2AYQA 6ICDA 1T0LA 5GRHA 4I3LA 2Y3ZA 4ATYA 3VKZA 5J34A 1HQSA 4AJSA 3ICDA 2UXRA 4HCXA 4AOVA 4XS3A 1XADA 1DPZA 3FLKA 4AJBA 3U1HA 5L58A 5L57A 5GRFA 5K10A 3LXYA 5GREB 4UMYA 1GROA 1ZORA 1PS7A 2Y42A 5GRIB 3VL6A 3TY4A 7ICDA 1V5BA 3U9EA 2QFWA 1AI2A 5GRHB 3VMKA 5J32A 1R8KA 4JA8A 3WZYA 1WALA 2E0CA 1CM7A
chains in the Genus database with same CATH superfamily
1DR8A 3UF6A 5ICDA 1X0LA 3UDUA 1GC9A 5LGEA 1OSJA 1IDCA 4AJAA 3MASA 1A05A 3VL2A 8ICDA 3ASJA 1IKAA 1XGVA 1PTMA 2D1CA 5HN6A 4WUOA 2UXQA 3TY3A 3VL4A 4I3KA 5K11A 1CW4A 4L04A 5GRLB 1IPDA 3UDOA 4BNPA 4AJRA 1XACA 4AOUA 3BLXB 4ICDA 2Y41A 3DMSA 1XAAA 1G2UA 2D4VA 4JQPA 4IWHA 3BLVA 1SJSA 5HN3A 1PB3A 3TSNA 2QFVA 2G4OA 2ZTWA 5I95A 1GC8A 1PB1A 1W0DA 1XABA 5GRFB 1CW1A 2QFXA 1ISOA 1IDMA 1HEXA 4Y1PA 4YB4A 1CNZA 1P8FA 5HN4A 3INMA 2QFYA 2DHTA 3FMXX 3R8WA 1V53A 3BLVB 4L03A 3MAPA 3WZWA 2Y40A 9ICDA 1V94A 4AOYA 4AJCA 1DR0A 3TNGA 1TYOA 3MASB 5J33A 2IV0A 5GRIA 1T09A 1IDEA 1U7NA 4KZOA 1LWDA 3WZVA 3VMLA 1WPWA 1VLCA 3MARA 1AI3A 5I96A 4XRXA 1YXOA 1XKDA 3AH3A 5DE1A 3VL3A 1IDDA 3VMJA 4P69C 4UMXA 3VL7A 4L06A 5HN5A 3US8A 3LCBC 1GRPA 1CW7A 1HJ6A 1YCOA 4AJ3A 1IDFA 1PS6A 2E5MA 1VI1A 5GRLA 4XXVA 5GREA 1OSIA 3WZXA 4F7IA 2HI1A 3BLXA 1BL5A 2AYQA 6ICDA 1T0LA 5GRHA 4I3LA 2Y3ZA 4ATYA 3VKZA 5J34A 1HQSA 4AJSA 3ICDA 2UXRA 4HCXA 4AOVA 4XS3A 1XADA 1DPZA 3FLKA 4AJBA 3U1HA 5L58A 5L57A 5GRFA 5K10A 3LXYA 5GREB 4UMYA 1GROA 1ZORA 1PS7A 2Y42A 5GRIB 3VL6A 3TY4A 7ICDA 1V5BA 3U9EA 2QFWA 1AI2A 5GRHB 3VMKA 5J32A 1R8KA 4JA8A 3WZYA 1WALA 2E0CA 1CM7A
chains in the Genus database with same CATH topology
1DR8A 3UF6A 5ICDA 1X0LA 3UDUA 1GC9A 5LGEA 1OSJA 1IDCA 4AJAA 3MASA 1A05A 3VL2A 8ICDA 3ASJA 1IKAA 1XGVA 1PTMA 2D1CA 5HN6A 4WUOA 2UXQA 3TY3A 3VL4A 4I3KA 5K11A 1CW4A 4L04A 5GRLB 1IPDA 3UDOA 4BNPA 4AJRA 1XACA 4AOUA 3BLXB 4ICDA 2Y41A 3DMSA 1XAAA 1G2UA 2D4VA 4JQPA 4IWHA 3BLVA 1SJSA 5HN3A 1PB3A 3TSNA 2QFVA 2G4OA 2ZTWA 5I95A 1GC8A 1PB1A 1W0DA 1XABA 5GRFB 1CW1A 2QFXA 1ISOA 1IDMA 1HEXA 4Y1PA 4YB4A 1CNZA 1P8FA 5HN4A 3INMA 2QFYA 2DHTA 3FMXX 3R8WA 1V53A 3BLVB 4L03A 3MAPA 3WZWA 2Y40A 9ICDA 1V94A 4AOYA 4AJCA 1DR0A 3TNGA 1TYOA 3MASB 5J33A 2IV0A 5GRIA 1T09A 1IDEA 1U7NA 4KZOA 1LWDA 3WZVA 3VMLA 1WPWA 1VLCA 3MARA 1AI3A 5I96A 4XRXA 1YXOA 1XKDA 3AH3A 5DE1A 3VL3A 1IDDA 3VMJA 4P69C 4UMXA 3VL7A 4L06A 5HN5A 3US8A 3LCBC 1GRPA 1CW7A 1HJ6A 1YCOA 4AJ3A 1IDFA 1PS6A 2E5MA 1VI1A 5GRLA 4XXVA 5GREA 1OSIA 3WZXA 4F7IA 2HI1A 3BLXA 1BL5A 2AYQA 6ICDA 1T0LA 5GRHA 4I3LA 2Y3ZA 4ATYA 3VKZA 5J34A 1HQSA 4AJSA 3ICDA 2UXRA 4HCXA 4AOVA 4XS3A 1XADA 1DPZA 3FLKA 4AJBA 3U1HA 5L58A 5L57A 5GRFA 5K10A 3LXYA 5GREB 4UMYA 1GROA 1ZORA 1PS7A 2Y42A 5GRIB 3VL6A 3TY4A 7ICDA 1V5BA 3U9EA 2QFWA 1AI2A 5GRHB 3VMKA 5J32A 1R8KA 4JA8A 3WZYA 1WALA 2E0CA 1CM7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DR8 A;  3UF6 A;  5ICD A;  1X0L A;  3UDU A;  1GC9 A;  5LGE A;  1OSJ A;  1IDC A;  4AJA A;  3MAS A;  1A05 A;  3VL2 A;  8ICD A;  3ASJ A;  1IKA A;  1XGV A;  1PTM A;  2D1C A;  5HN6 A;  4WUO A;  2UXQ A;  3TY3 A;  3VL4 A;  4I3K A;  5K11 A;  1CW4 A;  4L04 A;  5GRL B;  1IPD A;  3UDO A;  4BNP A;  4AJR A;  1XAC A;  4AOU A;  3BLX B;  4ICD A;  2Y41 A;  3DMS A;  1XAA A;  1G2U A;  2D4V A;  4JQP A;  4IWH A;  3BLV A;  1SJS A;  5HN3 A;  1PB3 A;  3TSN A;  2QFV A;  2G4O A;  2ZTW A;  5I95 A;  1GC8 A;  1PB1 A;  1W0D A;  1XAB A;  5GRF B;  1CW1 A;  2QFX A;  1ISO A;  1IDM A;  1HEX A;  4Y1P A;  4YB4 A;  1CNZ A;  1P8F A;  5HN4 A;  3INM A;  2QFY A;  2DHT A;  3FMX X;  3R8W A;  1V53 A;  3BLV B;  4L03 A;  3MAP A;  3WZW A;  2Y40 A;  9ICD A;  1V94 A;  4AOY A;  4AJC A;  1DR0 A;  3TNG A;  1TYO A;  3MAS B;  5J33 A;  2IV0 A;  5GRI A;  1T09 A;  1IDE A;  1U7N A;  4KZO A;  1LWD A;  3WZV A;  3VML A;  1WPW A;  1VLC A;  3MAR A;  1AI3 A;  5I96 A;  4XRX A;  1YXO A;  1XKD A;  3AH3 A;  5DE1 A;  3VL3 A;  1IDD A;  3VMJ A;  4P69 C;  4UMX A;  3VL7 A;  4L06 A;  5HN5 A;  3US8 A;  3LCB C;  1GRP A;  1CW7 A;  1HJ6 A;  1YCO A;  4AJ3 A;  1IDF A;  1PS6 A;  2E5M A;  1VI1 A;  5GRL A;  4XXV A;  5GRE A;  1OSI A;  3WZX A;  4F7I A;  2HI1 A;  3BLX A;  1BL5 A;  2AYQ A;  6ICD A;  1T0L A;  5GRH A;  4I3L A;  2Y3Z A;  4ATY A;  3VKZ A;  5J34 A;  1HQS A;  4AJS A;  3ICD A;  2UXR A;  4HCX A;  4AOV A;  4XS3 A;  1XAD A;  1DPZ A;  3FLK A;  4AJB A;  3U1H A;  5L58 A;  5L57 A;  5GRF A;  5K10 A;  3LXY A;  5GRE B;  4UMY A;  1GRO A;  1ZOR A;  1PS7 A;  2Y42 A;  5GRI B;  3VL6 A;  3TY4 A;  7ICD A;  1V5B A;  3U9E A;  2QFW A;  1AI2 A;  5GRH B;  3VMK A;  5J32 A;  1R8K A;  4JA8 A;  3WZY A;  1WAL A;  2E0C A;  1CM7 A; 
#chains in the Genus database with same CATH topology
 1DR8 A;  3UF6 A;  5ICD A;  1X0L A;  3UDU A;  1GC9 A;  5LGE A;  1OSJ A;  1IDC A;  4AJA A;  3MAS A;  1A05 A;  3VL2 A;  8ICD A;  3ASJ A;  1IKA A;  1XGV A;  1PTM A;  2D1C A;  5HN6 A;  4WUO A;  2UXQ A;  3TY3 A;  3VL4 A;  4I3K A;  5K11 A;  1CW4 A;  4L04 A;  5GRL B;  1IPD A;  3UDO A;  4BNP A;  4AJR A;  1XAC A;  4AOU A;  3BLX B;  4ICD A;  2Y41 A;  3DMS A;  1XAA A;  1G2U A;  2D4V A;  4JQP A;  4IWH A;  3BLV A;  1SJS A;  5HN3 A;  1PB3 A;  3TSN A;  2QFV A;  2G4O A;  2ZTW A;  5I95 A;  1GC8 A;  1PB1 A;  1W0D A;  1XAB A;  5GRF B;  1CW1 A;  2QFX A;  1ISO A;  1IDM A;  1HEX A;  4Y1P A;  4YB4 A;  1CNZ A;  1P8F A;  5HN4 A;  3INM A;  2QFY A;  2DHT A;  3FMX X;  3R8W A;  1V53 A;  3BLV B;  4L03 A;  3MAP A;  3WZW A;  2Y40 A;  9ICD A;  1V94 A;  4AOY A;  4AJC A;  1DR0 A;  3TNG A;  1TYO A;  3MAS B;  5J33 A;  2IV0 A;  5GRI A;  1T09 A;  1IDE A;  1U7N A;  4KZO A;  1LWD A;  3WZV A;  3VML A;  1WPW A;  1VLC A;  3MAR A;  1AI3 A;  5I96 A;  4XRX A;  1YXO A;  1XKD A;  3AH3 A;  5DE1 A;  3VL3 A;  1IDD A;  3VMJ A;  4P69 C;  4UMX A;  3VL7 A;  4L06 A;  5HN5 A;  3US8 A;  3LCB C;  1GRP A;  1CW7 A;  1HJ6 A;  1YCO A;  4AJ3 A;  1IDF A;  1PS6 A;  2E5M A;  1VI1 A;  5GRL A;  4XXV A;  5GRE A;  1OSI A;  3WZX A;  4F7I A;  2HI1 A;  3BLX A;  1BL5 A;  2AYQ A;  6ICD A;  1T0L A;  5GRH A;  4I3L A;  2Y3Z A;  4ATY A;  3VKZ A;  5J34 A;  1HQS A;  4AJS A;  3ICD A;  2UXR A;  4HCX A;  4AOV A;  4XS3 A;  1XAD A;  1DPZ A;  3FLK A;  4AJB A;  3U1H A;  5L58 A;  5L57 A;  5GRF A;  5K10 A;  3LXY A;  5GRE B;  4UMY A;  1GRO A;  1ZOR A;  1PS7 A;  2Y42 A;  5GRI B;  3VL6 A;  3TY4 A;  7ICD A;  1V5B A;  3U9E A;  2QFW A;  1AI2 A;  5GRH B;  3VMK A;  5J32 A;  1R8K A;  4JA8 A;  3WZY A;  1WAL A;  2E0C A;  1CM7 A; 
#chains in the Genus database with same CATH homology
 1DR8 A;  3UF6 A;  5ICD A;  1X0L A;  3UDU A;  1GC9 A;  5LGE A;  1OSJ A;  1IDC A;  4AJA A;  3MAS A;  1A05 A;  3VL2 A;  8ICD A;  3ASJ A;  1IKA A;  1XGV A;  1PTM A;  2D1C A;  5HN6 A;  4WUO A;  2UXQ A;  3TY3 A;  3VL4 A;  4I3K A;  5K11 A;  1CW4 A;  4L04 A;  5GRL B;  1IPD A;  3UDO A;  4BNP A;  4AJR A;  1XAC A;  4AOU A;  3BLX B;  4ICD A;  2Y41 A;  3DMS A;  1XAA A;  1G2U A;  2D4V A;  4JQP A;  4IWH A;  3BLV A;  1SJS A;  5HN3 A;  1PB3 A;  3TSN A;  2QFV A;  2G4O A;  2ZTW A;  5I95 A;  1GC8 A;  1PB1 A;  1W0D A;  1XAB A;  5GRF B;  1CW1 A;  2QFX A;  1ISO A;  1IDM A;  1HEX A;  4Y1P A;  4YB4 A;  1CNZ A;  1P8F A;  5HN4 A;  3INM A;  2QFY A;  2DHT A;  3FMX X;  3R8W A;  1V53 A;  3BLV B;  4L03 A;  3MAP A;  3WZW A;  2Y40 A;  9ICD A;  1V94 A;  4AOY A;  4AJC A;  1DR0 A;  3TNG A;  1TYO A;  3MAS B;  5J33 A;  2IV0 A;  5GRI A;  1T09 A;  1IDE A;  1U7N A;  4KZO A;  1LWD A;  3WZV A;  3VML A;  1WPW A;  1VLC A;  3MAR A;  1AI3 A;  5I96 A;  4XRX A;  1YXO A;  1XKD A;  3AH3 A;  5DE1 A;  3VL3 A;  1IDD A;  3VMJ A;  4P69 C;  4UMX A;  3VL7 A;  4L06 A;  5HN5 A;  3US8 A;  3LCB C;  1GRP A;  1CW7 A;  1HJ6 A;  1YCO A;  4AJ3 A;  1IDF A;  1PS6 A;  2E5M A;  1VI1 A;  5GRL A;  4XXV A;  5GRE A;  1OSI A;  3WZX A;  4F7I A;  2HI1 A;  3BLX A;  1BL5 A;  2AYQ A;  6ICD A;  1T0L A;  5GRH A;  4I3L A;  2Y3Z A;  4ATY A;  3VKZ A;  5J34 A;  1HQS A;  4AJS A;  3ICD A;  2UXR A;  4HCX A;  4AOV A;  4XS3 A;  1XAD A;  1DPZ A;  3FLK A;  4AJB A;  3U1H A;  5L58 A;  5L57 A;  5GRF A;  5K10 A;  3LXY A;  5GRE B;  4UMY A;  1GRO A;  1ZOR A;  1PS7 A;  2Y42 A;  5GRI B;  3VL6 A;  3TY4 A;  7ICD A;  1V5B A;  3U9E A;  2QFW A;  1AI2 A;  5GRH B;  3VMK A;  5J32 A;  1R8K A;  4JA8 A;  3WZY A;  1WAL A;  2E0C A;  1CM7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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