3X0YA

Crystal structure of fmn-bound dszc from rhodococcus erythropolis d-1
Total Genus 152
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
152
sequence length
402
structure length
402
Chain Sequence
ADNDPVAVARGLAEKWRATAVERDRAGGSATAEREDLRASGLLSLLVPREYGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPMIELIGSQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVRATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWTPAGIQQATEDPYTIRSYGEFTIALQGADAAAREAAHLLQTVWDKGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVIGARGTHPRYGFDRFWRNVRTHSLHDPVSYKIADVGKHTLNGQYPIPGFTS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DszC
publication title Crystal structures of apo-DszC and FMN-bound DszC from Rhodococcus erythropolis D-1
pubmed doi rcsb
source organism Rhodococcus erythropolis
molecule tags Oxidoreductase
total genus 152
structure length 402
sequence length 402
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2014-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
A PF08028 Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3x0yA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3x0yA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3x0yA02
3TTBA 4DOYA 4L3XA 4P13A 3FCJA 5K3GA 4IV6A 4U83A 2Z1QA 3MKHA 4N5FA 1SIRA 2VIGA 1W07A 2EBAA 3BNHA 2J7AA 2YYJA 2YYLA 2RF7A 3D9DA 1BUCA 3MXLA 2WBIA 3AFFA 3II9A 1SIQA 3GQTA 3MDDA 2R0MA 4Q4UA 2ZAFA 2IX5A 3HWCA 2CX9A 2D29A 2FONA 3SXQA 3MPJA 1R2JA 3D6BA 3EONA 3D1IA 3X0XA 2JBSA 3GM6A 3MMOA 3R7KA 2R0NA 1UDYA 3B96A 2YYMA 4Q17A 3D9FA 3P4TA 2OR0A 1GU6A 3LGQA 1EGCA 4XVXA 3SCEA 1WS9A 3TORA 3GNCA 4OO2A 4L3ZA 1FS9A 4X28C 1U8VA 3MDEA 3F29A 4WJYA 3OWMA 1FS7A 1IS2A 4KTOA 2JBTA 3D9EA 5K3JA 3BNFA 2RFQA 4KCFA 4Q5CA 3SF6A 2A1TA 2E81A 3D9GA 3OWAA 3SWOA 3PFDA 2C12A 4L1FA 4Q1OA 3M9VA 4W9UA 2YYKA 2UXWA 4G5EA 3AFEA 1OAHA 3X0YA 4ZXVA 4RM7A 4L38A 2REHA 1FS8A 3BNGA 1UKWA 4NXLA 2DVLA 3UU9A 2C0UA 1JQIA 3UBRA 1IVHA 4JEKA 1EGDA 3LG1A 2VR0A 1RX0A 1QDBA 4Q5BA 2IX6A 4ZYJA 4HR3A 2JIFA 3EOMA 2YYIA 3S7WA 2RDZA 2ZO5A 2DDHA 4IRNA 3NF4A 1EGEA 2E80A 4O5MA 1T9GA 3FO3A 5K3HA 2PG0A 4X28A 2OT4A 3L1TA 4L3YA 5K3IA 4M9AA 2JBRA 3BNJA 3RKHA 3MPIA 2YYGA 3OIBA 4Q0TA
chains in the Genus database with same CATH superfamily
3TTBA 4DOYA 4L3XA 4P13A 2R02A 1R3BA 1SC5A 1K8TA 2BTZA 3C2PA 3FCJA 3TZ5A 1X8ZA 5K3GA 4IV6A 4MP7A 4U83A 5BRKA 2Z1QA 5J6AA 5M4MA 2R03A 3Q24A 4AI6A 1Y8OA 3MKHA 4N5FA 1SIRA 2VIGA 1W07A 2EBAA 1XFYA 3D2RA 4FZ4A 1K93A 1GKXA 1S26A 3BNHA 4H81A 4MP2A 2J7AA 5BRMA 2YYJA 2ZKJA 2YYLA 2RF7A 3DJLA 3D9DA 4H85A 1BUCA 3MXLA 5EZ3A 3Q22A 3U33A 2BU7A 2WBIA 3AFFA 3VADA 4HKSA 3II9A 2AO2A 1SIQA 3GQTA 3C46A 3MDDA 2R0MA 4Q4UA 2ZAFA 2HJNA 2IX5A 3HWCA 4KSFA 4P79A 2CX9A 2D29A 2FONA 5B5WA 3SXQA 3MPJA 1XFUA 3KMLA 1SK6A 1R2JA 2Q8HA 3D6BA 4F0XA 3EONA 3X29A 3D1IA 3X0XA 1RJ1A 3CE2A 2OEVA 2JBSA 3GM6A 4JIZA 3MMOA 4DZYA 3R7KA 2R0NA 2F6LA 1UDYA 3B96A 2YYMA 4Q17A 3D9FA 3P4TA 2OR0A 1GU6A 2Q8FA 2PO4A 4MPCA 3LGQA 1RP3A 1EGCA 4XVXA 1JM6A 3VKGA 3SCEA 1WS9A 4JIOA 3GNCA 4OO2A 3TORA 3TZ0A 4AKHA 2Q8IA 4L3ZA 1PI1A 1FS9A 2LFWA 1Y8NA 2XS8A 4X28C 4AKIA 2YGWA 2E0AA 2FP1A 1U8VA 3MDEA 2BU2A 3F29A 5GJVE 4WJYA 4FF2A 3OWMA 1XFZA 1FS7A 1IS2A 4KTOA 2JBTA 3D9EA 3CRLA 4E02A 5K3JA 3BNFA 3TZ2A 2RFQA 1X91A 4KCFA 1XFWA 2FP2A 2BU5A 2OJQA 2PNRA 3SF6A 2A1TA 4KSAA 2E81A 2AZEA 4Q5CA 3D9GA 3OWAA 3SWOA 2CJ6A 3PFDA 2OEXA 2C12A 4MPNA 4L1FA 4Q1OA 1PK0A 3M9VA 4MPEA 4W9UA 3Q0AA 3TZ4A 2YYKA 5B5VA 2ZDXA 2UXWA 4G5EA 1X90A 3AFEA 4H7QA 1OAHA 5J71A 3X0YA 4AKGA 4ZXVA 2CJ4A 4RM7A 4V26A 2Q8GA 5M4PA 4L38A 2REHA 5GJWE 2ZDYA 4KS9A 2GBBA 1FS8A 4E00A 3BNGA 1UKWA 4NXLA 3VKHA 2DVLA 2XS1A 2C0UA 3UU9A 5B6BA 2CJ7A 1JQIA 4V25A 3Q23A 3N0RA 3UBRA 1IVHA 1Y8PA 2VF1A 4JEKA 1EGDA 3LG1A 2VR0A 2R05A 1XFXA 4E01A 3CRKA 1RX0A 1QDBA 4Q5BA 2IX6A 4ZYJA 1K90A 2EBHX 4HR3A 1RJ4A 2JIFA 1Y0VA 3EOMA 1XG2B 2YYIA 3S7WA 2RDZA 2QR4A 2ZO5A 2EBFX 2DDHA 4IRNA 3NF4A 1EGEA 2BU6A 2E80A 4O5MA 1T9GA 2XQRB 4LQQB 5M4KA 4J1VA 2BU8A 3FO3A 5M4NA 5K3HA 2PG0A 4X28A 1XFVA 4FF1A 2OT4A 3L1TA 4L3YA 5K3IA 1GJVA 2CJ5A 4M9AA 4G97A 3C3LA 2JBRA 1GKZA 3BNJA 4FF4A 3RKHA 3MPIA 4LQSB 4HKRA 2EC5A 4QICA 1LVCA 2YYGA 3OIBA 4FF3A 2CJ8A 4Q0TA
chains in the Genus database with same CATH topology
3TTBA 4DOYA 4L3XA 4P13A 3FCJA 5K3GA 4IV6A 4U83A 2Z1QA 3MKHA 4N5FA 1SIRA 2VIGA 1W07A 2EBAA 3BNHA 2J7AA 2YYJA 2YYLA 2RF7A 3D9DA 1BUCA 3MXLA 2WBIA 3AFFA 3II9A 1SIQA 3GQTA 3MDDA 2R0MA 4Q4UA 2ZAFA 2IX5A 3HWCA 2CX9A 2D29A 2FONA 3SXQA 3MPJA 1R2JA 3D6BA 3EONA 3D1IA 3X0XA 2JBSA 3GM6A 3MMOA 3R7KA 2R0NA 1UDYA 3B96A 2YYMA 4Q17A 3D9FA 3P4TA 2OR0A 1GU6A 3LGQA 1EGCA 4XVXA 3SCEA 1WS9A 3TORA 3GNCA 4OO2A 4L3ZA 1FS9A 4X28C 1U8VA 3MDEA 3F29A 4WJYA 3OWMA 1FS7A 1IS2A 4KTOA 2JBTA 3D9EA 5K3JA 3BNFA 2RFQA 4KCFA 4Q5CA 3SF6A 2A1TA 2E81A 3D9GA 3OWAA 3SWOA 3PFDA 2C12A 4L1FA 4Q1OA 3M9VA 4W9UA 2YYKA 2UXWA 4G5EA 3AFEA 1OAHA 3X0YA 4ZXVA 4RM7A 4L38A 2REHA 1FS8A 3BNGA 1UKWA 4NXLA 2DVLA 3UU9A 2C0UA 1JQIA 3UBRA 1IVHA 4JEKA 1EGDA 3LG1A 2VR0A 1RX0A 1QDBA 4Q5BA 2IX6A 4ZYJA 4HR3A 2JIFA 3EOMA 2YYIA 3S7WA 2RDZA 2ZO5A 2DDHA 4IRNA 3NF4A 1EGEA 2E80A 4O5MA 1T9GA 3FO3A 5K3HA 2PG0A 4X28A 2OT4A 3L1TA 4L3YA 5K3IA 4M9AA 2JBRA 3BNJA 3RKHA 3MPIA 2YYGA 3OIBA 4Q0TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TTB A;  4DOY A;  4L3X A;  4P13 A;  3FCJ A;  5K3G A;  4IV6 A;  4U83 A;  2Z1Q A;  3MKH A;  4N5F A;  1SIR A;  2VIG A;  1W07 A;  2EBA A;  3BNH A;  2J7A A;  2YYJ A;  2YYL A;  2RF7 A;  3D9D A;  1BUC A;  3MXL A;  2WBI A;  3AFF A;  3II9 A;  1SIQ A;  3GQT A;  3MDD A;  2R0M A;  4Q4U A;  2ZAF A;  2IX5 A;  3HWC A;  2CX9 A;  2D29 A;  2FON A;  3SXQ A;  3MPJ A;  1R2J A;  3D6B A;  3EON A;  3D1I A;  3X0X A;  2JBS A;  3GM6 A;  3MMO A;  3R7K A;  2R0N A;  1UDY A;  3B96 A;  2YYM A;  4Q17 A;  3D9F A;  3P4T A;  2OR0 A;  1GU6 A;  3LGQ A;  1EGC A;  4XVX A;  3SCE A;  1WS9 A;  3TOR A;  3GNC A;  4OO2 A;  4L3Z A;  1FS9 A;  4X28 C;  1U8V A;  3MDE A;  3F29 A;  4WJY A;  3OWM A;  1FS7 A;  1IS2 A;  4KTO A;  2JBT A;  3D9E A;  5K3J A;  3BNF A;  2RFQ A;  4KCF A;  4Q5C A;  3SF6 A;  2A1T A;  2E81 A;  3D9G A;  3OWA A;  3SWO A;  3PFD A;  2C12 A;  4L1F A;  4Q1O A;  3M9V A;  4W9U A;  2YYK A;  2UXW A;  4G5E A;  3AFE A;  1OAH A;  3X0Y A;  4ZXV A;  4RM7 A;  4L38 A;  2REH A;  1FS8 A;  3BNG A;  1UKW A;  4NXL A;  2DVL A;  3UU9 A;  2C0U A;  1JQI A;  3UBR A;  1IVH A;  4JEK A;  1EGD A;  3LG1 A;  2VR0 A;  1RX0 A;  1QDB A;  4Q5B A;  2IX6 A;  4ZYJ A;  4HR3 A;  2JIF A;  3EOM A;  2YYI A;  3S7W A;  2RDZ A;  2ZO5 A;  2DDH A;  4IRN A;  3NF4 A;  1EGE A;  2E80 A;  4O5M A;  1T9G A;  3FO3 A;  5K3H A;  2PG0 A;  4X28 A;  2OT4 A;  3L1T A;  4L3Y A;  5K3I A;  4M9A A;  2JBR A;  3BNJ A;  3RKH A;  3MPI A;  2YYG A;  3OIB A;  4Q0T A; 
#chains in the Genus database with same CATH topology
 3TTB A;  4DOY A;  4L3X A;  4P13 A;  2R02 A;  1R3B A;  1SC5 A;  1K8T A;  2BTZ A;  3C2P A;  3FCJ A;  3TZ5 A;  1X8Z A;  5K3G A;  4IV6 A;  4MP7 A;  4U83 A;  5BRK A;  2Z1Q A;  5J6A A;  5M4M A;  2R03 A;  3Q24 A;  4AI6 A;  1Y8O A;  3MKH A;  4N5F A;  1SIR A;  2VIG A;  1W07 A;  2EBA A;  1XFY A;  3D2R A;  4FZ4 A;  1K93 A;  1GKX A;  1S26 A;  3BNH A;  4H81 A;  4MP2 A;  2J7A A;  5BRM A;  2YYJ A;  2ZKJ A;  2YYL A;  2RF7 A;  3DJL A;  3D9D A;  4H85 A;  1BUC A;  3MXL A;  5EZ3 A;  3Q22 A;  3U33 A;  2BU7 A;  2WBI A;  3AFF A;  3VAD A;  4HKS A;  3II9 A;  2AO2 A;  1SIQ A;  3GQT A;  3C46 A;  3MDD A;  2R0M A;  4Q4U A;  2ZAF A;  2HJN A;  2IX5 A;  3HWC A;  4KSF A;  4P79 A;  2CX9 A;  2D29 A;  2FON A;  5B5W A;  3SXQ A;  3MPJ A;  1XFU A;  3KML A;  1SK6 A;  1R2J A;  2Q8H A;  3D6B A;  4F0X A;  3EON A;  3X29 A;  3D1I A;  3X0X A;  1RJ1 A;  3CE2 A;  2OEV A;  2JBS A;  3GM6 A;  4JIZ A;  3MMO A;  4DZY A;  3R7K A;  2R0N A;  2F6L A;  1UDY A;  3B96 A;  2YYM A;  4Q17 A;  3D9F A;  3P4T A;  2OR0 A;  1GU6 A;  2Q8F A;  2PO4 A;  4MPC A;  3LGQ A;  1RP3 A;  1EGC A;  4XVX A;  1JM6 A;  3VKG A;  3SCE A;  1WS9 A;  4JIO A;  3GNC A;  4OO2 A;  3TOR A;  3TZ0 A;  4AKH A;  2Q8I A;  4L3Z A;  1PI1 A;  1FS9 A;  2LFW A;  1Y8N A;  2XS8 A;  4X28 C;  4AKI A;  2YGW A;  2E0A A;  2FP1 A;  1U8V A;  3MDE A;  2BU2 A;  3F29 A;  5GJV E;  4WJY A;  4FF2 A;  3OWM A;  1XFZ A;  1FS7 A;  1IS2 A;  4KTO A;  2JBT A;  3D9E A;  3CRL A;  4E02 A;  5K3J A;  3BNF A;  3TZ2 A;  2RFQ A;  1X91 A;  4KCF A;  1XFW A;  2FP2 A;  2BU5 A;  2OJQ A;  2PNR A;  3SF6 A;  2A1T A;  4KSA A;  2E81 A;  2AZE A;  4Q5C A;  3D9G A;  3OWA A;  3SWO A;  2CJ6 A;  3PFD A;  2OEX A;  2C12 A;  4MPN A;  4L1F A;  4Q1O A;  1PK0 A;  3M9V A;  4MPE A;  4W9U A;  3Q0A A;  3TZ4 A;  2YYK A;  5B5V A;  2ZDX A;  2UXW A;  4G5E A;  1X90 A;  3AFE A;  4H7Q A;  1OAH A;  5J71 A;  3X0Y A;  4AKG A;  4ZXV A;  2CJ4 A;  4RM7 A;  4V26 A;  2Q8G A;  5M4P A;  4L38 A;  2REH A;  5GJW E;  2ZDY A;  4KS9 A;  2GBB A;  1FS8 A;  4E00 A;  3BNG A;  1UKW A;  4NXL A;  3VKH A;  2DVL A;  2XS1 A;  2C0U A;  3UU9 A;  5B6B A;  2CJ7 A;  1JQI A;  4V25 A;  3Q23 A;  3N0R A;  3UBR A;  1IVH A;  1Y8P A;  2VF1 A;  4JEK A;  1EGD A;  3LG1 A;  2VR0 A;  2R05 A;  1XFX A;  4E01 A;  3CRK A;  1RX0 A;  1QDB A;  4Q5B A;  2IX6 A;  4ZYJ A;  1K90 A;  2EBH X;  4HR3 A;  1RJ4 A;  2JIF A;  1Y0V A;  3EOM A;  1XG2 B;  2YYI A;  3S7W A;  2RDZ A;  2QR4 A;  2ZO5 A;  2EBF X;  2DDH A;  4IRN A;  3NF4 A;  1EGE A;  2BU6 A;  2E80 A;  4O5M A;  1T9G A;  2XQR B;  4LQQ B;  5M4K A;  4J1V A;  2BU8 A;  3FO3 A;  5M4N A;  5K3H A;  2PG0 A;  4X28 A;  1XFV A;  4FF1 A;  2OT4 A;  3L1T A;  4L3Y A;  5K3I A;  1GJV A;  2CJ5 A;  4M9A A;  4G97 A;  3C3L A;  2JBR A;  1GKZ A;  3BNJ A;  4FF4 A;  3RKH A;  3MPI A;  4LQS B;  4HKR A;  2EC5 A;  4QIC A;  1LVC A;  2YYG A;  3OIB A;  4FF3 A;  2CJ8 A;  4Q0T A; 
#chains in the Genus database with same CATH homology
 3TTB A;  4DOY A;  4L3X A;  4P13 A;  3FCJ A;  5K3G A;  4IV6 A;  4U83 A;  2Z1Q A;  3MKH A;  4N5F A;  1SIR A;  2VIG A;  1W07 A;  2EBA A;  3BNH A;  2J7A A;  2YYJ A;  2YYL A;  2RF7 A;  3D9D A;  1BUC A;  3MXL A;  2WBI A;  3AFF A;  3II9 A;  1SIQ A;  3GQT A;  3MDD A;  2R0M A;  4Q4U A;  2ZAF A;  2IX5 A;  3HWC A;  2CX9 A;  2D29 A;  2FON A;  3SXQ A;  3MPJ A;  1R2J A;  3D6B A;  3EON A;  3D1I A;  3X0X A;  2JBS A;  3GM6 A;  3MMO A;  3R7K A;  2R0N A;  1UDY A;  3B96 A;  2YYM A;  4Q17 A;  3D9F A;  3P4T A;  2OR0 A;  1GU6 A;  3LGQ A;  1EGC A;  4XVX A;  3SCE A;  1WS9 A;  3TOR A;  3GNC A;  4OO2 A;  4L3Z A;  1FS9 A;  4X28 C;  1U8V A;  3MDE A;  3F29 A;  4WJY A;  3OWM A;  1FS7 A;  1IS2 A;  4KTO A;  2JBT A;  3D9E A;  5K3J A;  3BNF A;  2RFQ A;  4KCF A;  4Q5C A;  3SF6 A;  2A1T A;  2E81 A;  3D9G A;  3OWA A;  3SWO A;  3PFD A;  2C12 A;  4L1F A;  4Q1O A;  3M9V A;  4W9U A;  2YYK A;  2UXW A;  4G5E A;  3AFE A;  1OAH A;  3X0Y A;  4ZXV A;  4RM7 A;  4L38 A;  2REH A;  1FS8 A;  3BNG A;  1UKW A;  4NXL A;  2DVL A;  3UU9 A;  2C0U A;  1JQI A;  3UBR A;  1IVH A;  4JEK A;  1EGD A;  3LG1 A;  2VR0 A;  1RX0 A;  1QDB A;  4Q5B A;  2IX6 A;  4ZYJ A;  4HR3 A;  2JIF A;  3EOM A;  2YYI A;  3S7W A;  2RDZ A;  2ZO5 A;  2DDH A;  4IRN A;  3NF4 A;  1EGE A;  2E80 A;  4O5M A;  1T9G A;  3FO3 A;  5K3H A;  2PG0 A;  4X28 A;  2OT4 A;  3L1T A;  4L3Y A;  5K3I A;  4M9A A;  2JBR A;  3BNJ A;  3RKH A;  3MPI A;  2YYG A;  3OIB A;  4Q0T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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