3X1LF

Crystal structure of the crispr-cas rna silencing cmr complex bound to a target analog
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
149
structure length
146
Chain Sequence
IREIEQERASFAFKVVSDIKDKYSQNKKVQGKYSSYAEKAPTIILNNGLGATLAFFLSKLIDDVDYKSINPESFGNAENIAYAFLYKHLSTWLAEGNGKDSAFSGLTNGEDPLKYIMEKTAIDVAISTEEALSILNWIKKFAKAML
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein/rna/dna
molecule keywords CRISPR system Cmr subunit Cmr2
publication title Crystal Structure of the CRISPR-Cas RNA Silencing Cmr Complex Bound to a Target Analog
pubmed doi rcsb
source organism Pyrococcus furiosus dsm 3638
total genus 55
structure length 146
sequence length 149
chains with identical sequence G
ec nomenclature
pdb deposition date 2014-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF09701 Cas_Cmr5 CRISPR-associated protein (Cas_Cmr5)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.520.30 Mainly Alpha Orthogonal Bundle Peroxidase; domain 1 AF1862-like domain 3x1lF00
2OEBA 3X1LF 4GKFA 2ZOPA
chains in the Genus database with same CATH superfamily
4BLZA 3M8MA 1ABVA 1H5JA 1H5MA 1LYKA 1CMQA 5ABQA 1MNPA 2GGNX 1QPAA 1AEUA 3R99A 1AEOA 1YZRA 1ARWA 5L02A 4JB4A 1FHFA 4C50A 3M2AA 4JMTA 4USCA 2CCAA 4BM4A 3EXBA 5SXWA 1CCJA 1AESA 1HSRA 2RBWX 2RBZX 3Q3UA 2GB8A 4OQ7A 1Z53A 5SX1A 1BVAA 1CCIA 4NVLA 5CD4J 2VCSA 5KQ6A 3CCXA 1H58A 2B10A 1MN1A 1H5CA 1DSGA 3M26A 1LY8A 1LY9A 2V23A 4BM0A 2AS1A 3M2IA 4H7AA 1DJ1A 5JHZA 4CZNA 2OEBA 1CCEA 1MKQA 4JMWA 4JPUA 1KXNA 5KQHA 1SDQA 4JMBA 1U2JA 1CCLA 1DJ5A 4NVIB 4BLXA 2CCDA 1GWOA 2XIHA 3M2FA 1SOGA 1H5AA 5AOGA 3FM4A 4JM5A 4NVFA 4XVAA 1YYDA 3RIVA 1HCHA 1BGPA 2ICVA 3E2OA 2X08A 2E3AA 5CIBA 4C51A 3CCPA 3X1LF 1YZPA 1BEJA 5CJHA 5SYWA 4NFGA 5SXTA 1AA4A 5KQ0A 2PCBA 4FEFA 4NVNB 1H5KA 1PA2A 1SCHA 2E39A 1BEKA 4JMVA 3WA8A 5L86A 3VLKA 1AEMA 1AEVA 1CYFA 3M25A 3HDLA 4U7UB 4CVIA 1AETA 5SW6A 5SYHA 2ATJA 5SXQA 1STQA 4XV5A 4CZPA 2EUOA 1ARVA 5EJTA 2AQDA 5SX0B 1DSPA 1H5GA 4CUOA 1OAFA 3UT2A 4NVDA 5KQIA 1UB2A 3RRWA 5SX2A 1H5IA 1APXA 1KZMA 4CCPA 1B82A 1H5LA 2WD4A 4BLLA 2ZCAA 5FNBA 7ATJA 3M5QA 1AEJA 1KOKA 2CL4X 4NVMB 5SX7A 1AEDA 1ML2A 5ABOA 1H55A 4ATJA 4XV7A 1AC4A 2ANZA 1JDRA 2GHKX 5H9EB 3M2DA 1ARPA 5CIFA 2RC2X 2Y6AA 4BLNA 1S6VA 5KQ2A 1GZBA 1KXMA 2BO5A 1ARXA 4PAEA 2EUQA 1AEGA 1V0HX 2YLJA 5SYUA 4BM1A 2YCGA 1EBEA 3VLLA 1GZAA 1GW2A 2GHDX 4JM6A 5KSKA 1DSEA 2W23A 1AC8A 4JZAA 4NVOB 2E3BA 4A78A 2ZOPA 4A5GA 3M28A 4BM2A 3WXOA 1AEQA 5H9FB 5JHYA 3M27A 4JMSA 3RIWA 1BEMA 4XV8A 2B12A 4JMZA 4JQMA 4XV4A 5SW4A 2X07A 2AS2A 1ITKA 2GHHX 4A7MA 1BEPA 5SX6A 3ATJA 1MK8A 5CIEA 3VLIA 1CCKA 1ARYA 4CZRA 2Y5AA 4NVEA 1AEBA 1H5DA 1GWTA 5CCPA 1GWUA 1CCCA 3X16A 3VLMA 3M2GA 4JM9A 1GX2A 3ZCGA 4XV6A 1CPGA 5SXRA 3M29A 2XJ6A 5ABNA 4NVAA 3ZCHA 1SJ2A 1JCIA 5CIHA 1IYNA 1KRJA 1MN2A 5SXXA 1MKRA 4FDQA 4BM3A 5KSFA 1ARUA 5CIDA 2CCPA 5FNEA 1CPEA 2B11A 2XJ5A 5JPRA 4A6ZA 5JQRA 1U2KA 1U74A 5CIGA 2B0ZA 1BJ9A 1U75A 2AS3A 3ZCYA 5KQKA 3UW8A 5SYXA 4NVCA 1CMPA 4JQKA 2RBYX 5AMMA 1CK6A 5L05A 1CCPA 5SYIA 1YYGA 5EJXA 3VLHA 1AEKA 4A71A 1DS4A 3VLJA 3M2BA 1BESA 3M2EA 5SX0A 1B80A 1DCCA 3FM6A 5SYKA 4FCSA 4JQJA 2VKAA 4GEDA 4NVJB 4FCNA 3WNUA 3FMUA 5SYYA 5SW5A 1SBMA 1BEQA 1AENA 2GHEX 1W4WA 1W4YA 2JTIA 1DSOA 2RC0X 4NVKB 5AL9A 1CCGA 1ZBYA 2WSSS 4CVJA 1OAGA 3R98A 5JHXA 4CCXA 1CMUA 2Y6BA 1LYCA 6CCPA 5SX3A 4GKFA 2JMXA 2VCFX 1QO4A 2EUTA 1CPFA 1ZBZA 2BOQA 1A2FA 1LGAA 2RBUX 2RBVX 2XI6A 2VO2X 3E2NA 2VNZX 1A2GA 2AS4A 3FM1A 4NVGB 5D6MA 2RC1X 4JPTA 2IA8A 1QGJA 1S73A 1U2LA 2CEPA 1H57A 4BLKA 2BCNA 4JMAA 4CZOA 2EUUA 1H3JA 4JQNA 4H79A 4QYZB 5CICA 2VCNA 2A7UB 3M2HA 2AS6A 5SYVA 2EUSA 4JPLA 2XILA 1H5FA 5SYJA 5KQ3A 1H5EA 5ALAA 5SXSA 2RBXX 1AEHA 6ATJA 1CPDA 1RYCA 4BLYA 4JN0A 2V2EA 2N18A 1CMTA 3M23A 2VNXX 1AEEA 1B85A 2XIFA 4G05A 2EURA 2EUPA 1LLPA 2GHCX 3FJWA 3M2CA 1C8IA 1AEFA 1ATJA 3FKGA 1CCBA 2RBTX 7CCPA 1CCAA 4NVHB 5SYLA 2PCCA 2EUNA 2CYPA 4CZQA 2XJ8A 4JM8A 1H5HA 4NVBA 4P4QA
chains in the Genus database with same CATH topology
2OEBA 3X1LF 4GKFA 2ZOPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OEB A;  3X1L F;  4GKF A;  2ZOP A; 
#chains in the Genus database with same CATH topology
 4BLZ A;  3M8M A;  1ABV A;  1H5J A;  1H5M A;  1LYK A;  1CMQ A;  5ABQ A;  1MNP A;  2GGN X;  1QPA A;  1AEU A;  3R99 A;  1AEO A;  1YZR A;  1ARW A;  5L02 A;  4JB4 A;  1FHF A;  4C50 A;  3M2A A;  4JMT A;  4USC A;  2CCA A;  4BM4 A;  3EXB A;  5SXW A;  1CCJ A;  1AES A;  1HSR A;  2RBW X;  2RBZ X;  3Q3U A;  2GB8 A;  4OQ7 A;  1Z53 A;  5SX1 A;  1BVA A;  1CCI A;  4NVL A;  5CD4 J;  2VCS A;  5KQ6 A;  3CCX A;  1H58 A;  2B10 A;  1MN1 A;  1H5C A;  1DSG A;  3M26 A;  1LY8 A;  1LY9 A;  2V23 A;  4BM0 A;  2AS1 A;  3M2I A;  4H7A A;  1DJ1 A;  5JHZ A;  4CZN A;  2OEB A;  1CCE A;  1MKQ A;  4JMW A;  4JPU A;  1KXN A;  5KQH A;  1SDQ A;  4JMB A;  1U2J A;  1CCL A;  1DJ5 A;  4NVI B;  4BLX A;  2CCD A;  1GWO A;  2XIH A;  3M2F A;  1SOG A;  1H5A A;  5AOG A;  3FM4 A;  4JM5 A;  4NVF A;  4XVA A;  1YYD A;  3RIV A;  1HCH A;  1BGP A;  2ICV A;  3E2O A;  2X08 A;  2E3A A;  5CIB A;  4C51 A;  3CCP A;  3X1L F;  1YZP A;  1BEJ A;  5CJH A;  5SYW A;  4NFG A;  5SXT A;  1AA4 A;  5KQ0 A;  2PCB A;  4FEF A;  4NVN B;  1H5K A;  1PA2 A;  1SCH A;  2E39 A;  1BEK A;  4JMV A;  3WA8 A;  5L86 A;  3VLK A;  1AEM A;  1AEV A;  1CYF A;  3M25 A;  3HDL A;  4U7U B;  4CVI A;  1AET A;  5SW6 A;  5SYH A;  2ATJ A;  5SXQ A;  1STQ A;  4XV5 A;  4CZP A;  2EUO A;  1ARV A;  5EJT A;  2AQD A;  5SX0 B;  1DSP A;  1H5G A;  4CUO A;  1OAF A;  3UT2 A;  4NVD A;  5KQI A;  1UB2 A;  3RRW A;  5SX2 A;  1H5I A;  1APX A;  1KZM A;  4CCP A;  1B82 A;  1H5L A;  2WD4 A;  4BLL A;  2ZCA A;  5FNB A;  7ATJ A;  3M5Q A;  1AEJ A;  1KOK A;  2CL4 X;  4NVM B;  5SX7 A;  1AED A;  1ML2 A;  5ABO A;  1H55 A;  4ATJ A;  4XV7 A;  1AC4 A;  2ANZ A;  1JDR A;  2GHK X;  5H9E B;  3M2D A;  1ARP A;  5CIF A;  2RC2 X;  2Y6A A;  4BLN A;  1S6V A;  5KQ2 A;  1GZB A;  1KXM A;  2BO5 A;  1ARX A;  4PAE A;  2EUQ A;  1AEG A;  1V0H X;  2YLJ A;  5SYU A;  4BM1 A;  2YCG A;  1EBE A;  3VLL A;  1GZA A;  1GW2 A;  2GHD X;  4JM6 A;  5KSK A;  1DSE A;  2W23 A;  1AC8 A;  4JZA A;  4NVO B;  2E3B A;  4A78 A;  2ZOP A;  4A5G A;  3M28 A;  4BM2 A;  3WXO A;  1AEQ A;  5H9F B;  5JHY A;  3M27 A;  4JMS A;  3RIW A;  1BEM A;  4XV8 A;  2B12 A;  4JMZ A;  4JQM A;  4XV4 A;  5SW4 A;  2X07 A;  2AS2 A;  1ITK A;  2GHH X;  4A7M A;  1BEP A;  5SX6 A;  3ATJ A;  1MK8 A;  5CIE A;  3VLI A;  1CCK A;  1ARY A;  4CZR A;  2Y5A A;  4NVE A;  1AEB A;  1H5D A;  1GWT A;  5CCP A;  1GWU A;  1CCC A;  3X16 A;  3VLM A;  3M2G A;  4JM9 A;  1GX2 A;  3ZCG A;  4XV6 A;  1CPG A;  5SXR A;  3M29 A;  2XJ6 A;  5ABN A;  4NVA A;  3ZCH A;  1SJ2 A;  1JCI A;  5CIH A;  1IYN A;  1KRJ A;  1MN2 A;  5SXX A;  1MKR A;  4FDQ A;  4BM3 A;  5KSF A;  1ARU A;  5CID A;  2CCP A;  5FNE A;  1CPE A;  2B11 A;  2XJ5 A;  5JPR A;  4A6Z A;  5JQR A;  1U2K A;  1U74 A;  5CIG A;  2B0Z A;  1BJ9 A;  1U75 A;  2AS3 A;  3ZCY A;  5KQK A;  3UW8 A;  5SYX A;  4NVC A;  1CMP A;  4JQK A;  2RBY X;  5AMM A;  1CK6 A;  5L05 A;  1CCP A;  5SYI A;  1YYG A;  5EJX A;  3VLH A;  1AEK A;  4A71 A;  1DS4 A;  3VLJ A;  3M2B A;  1BES A;  3M2E A;  5SX0 A;  1B80 A;  1DCC A;  3FM6 A;  5SYK A;  4FCS A;  4JQJ A;  2VKA A;  4GED A;  4NVJ B;  4FCN A;  3WNU A;  3FMU A;  5SYY A;  5SW5 A;  1SBM A;  1BEQ A;  1AEN A;  2GHE X;  1W4W A;  1W4Y A;  2JTI A;  1DSO A;  2RC0 X;  4NVK B;  5AL9 A;  1CCG A;  1ZBY A;  2WSS S;  4CVJ A;  1OAG A;  3R98 A;  5JHX A;  4CCX A;  1CMU A;  2Y6B A;  1LYC A;  6CCP A;  5SX3 A;  4GKF A;  2JMX A;  2VCF X;  1QO4 A;  2EUT A;  1CPF A;  1ZBZ A;  2BOQ A;  1A2F A;  1LGA A;  2RBU X;  2RBV X;  2XI6 A;  2VO2 X;  3E2N A;  2VNZ X;  1A2G A;  2AS4 A;  3FM1 A;  4NVG B;  5D6M A;  2RC1 X;  4JPT A;  2IA8 A;  1QGJ A;  1S73 A;  1U2L A;  2CEP A;  1H57 A;  4BLK A;  2BCN A;  4JMA A;  4CZO A;  2EUU A;  1H3J A;  4JQN A;  4H79 A;  4QYZ B;  5CIC A;  2VCN A;  2A7U B;  3M2H A;  2AS6 A;  5SYV A;  2EUS A;  4JPL A;  2XIL A;  1H5F A;  5SYJ A;  5KQ3 A;  1H5E A;  5ALA A;  5SXS A;  2RBX X;  1AEH A;  6ATJ A;  1CPD A;  1RYC A;  4BLY A;  4JN0 A;  2V2E A;  2N18 A;  1CMT A;  3M23 A;  2VNX X;  1AEE A;  1B85 A;  2XIF A;  4G05 A;  2EUR A;  2EUP A;  1LLP A;  2GHC X;  3FJW A;  3M2C A;  1C8I A;  1AEF A;  1ATJ A;  3FKG A;  1CCB A;  2RBT X;  7CCP A;  1CCA A;  4NVH B;  5SYL A;  2PCC A;  2EUN A;  2CYP A;  4CZQ A;  2XJ8 A;  4JM8 A;  1H5H A;  4NVB A;  4P4Q A; 
#chains in the Genus database with same CATH homology
 2OEB A;  3X1L F;  4GKF A;  2ZOP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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