3X33A

Crystal structure of the oxidized form of the solubilized domain of porcine cytochrome b5 in form 2 crystal
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
87
structure length
87
Chain Sequence
AVKYYTLEEIQKHNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDRSKIAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title High-resolution crystal structures of the solubilized domain of porcine cytochrome b5
doi rcsb
molecule tags Electron transport
source organism Sus scrofa
molecule keywords Cytochrome b5
total genus 27
structure length 87
sequence length 87
ec nomenclature
pdb deposition date 2015-01-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 3x33A00
1MNYA 1LCOA 1CYOA 1NX7A 1LQXA 4HINA 1LR6A 2KEOA 1F04A 1ICCA 2I96A 1I8CA 1MJ4A 2OZ0A 1ES1A 1EHBA 1CXYA 1M59A 1SOXA 1I5UA 3NERA 1AWPA 1KBIA 1U9MA 3KS0A 1U9UA 1LJ0A 1F03A 1IB7A 1T0GA 1LDCA 1HKOA 1IEUA 1I87A 1M20A 1IETA 1X3XA 1AXXA 1JEXA 1EUEA 2I89A 1SH4A 3X32A 1J03A 1BLVA 1B5BA 3LF5A 3OZZB 2IBJA 3X33A 4B8NA 1B5AA 3X34A 1DO9A 2AXXA 1M2IA 3X35A 4HILA 4X8YA 1BFXA 1AQAA 1LTDA 1M2MA 2M33A 1J0QA 1FCBA 3MUSA 1AW3A 1B5MA
chains in the Genus database with same CATH superfamily
1MNYA 1LCOA 1CYOA 1NX7A 1LQXA 4HINA 1LR6A 2KEOA 1F04A 1ICCA 2I96A 1I8CA 1MJ4A 2OZ0A 1ES1A 1EHBA 1CXYA 1M59A 1SOXA 1I5UA 3NERA 1AWPA 1KBIA 1U9MA 3KS0A 1U9UA 1LJ0A 1F03A 1IB7A 1T0GA 1LDCA 1HKOA 1IEUA 1I87A 1M20A 1IETA 1X3XA 1AXXA 1JEXA 1EUEA 2I89A 1SH4A 3X32A 1J03A 1BLVA 1B5BA 3LF5A 3OZZB 2IBJA 3X33A 4B8NA 1B5AA 3X34A 1DO9A 2AXXA 1M2IA 3X35A 4HILA 4X8YA 1BFXA 1AQAA 1LTDA 1M2MA 2M33A 1J0QA 1FCBA 3MUSA 1AW3A 1B5MA
chains in the Genus database with same CATH topology
1MNYA 1LCOA 1CYOA 1NX7A 1LQXA 4HINA 1LR6A 2KEOA 1F04A 1ICCA 2I96A 1I8CA 1MJ4A 2OZ0A 1ES1A 1EHBA 1CXYA 1M59A 1SOXA 1I5UA 3NERA 1AWPA 1KBIA 1U9MA 3KS0A 1U9UA 1LJ0A 1F03A 1IB7A 1T0GA 1LDCA 1HKOA 1IEUA 1I87A 1M20A 1IETA 1X3XA 1AXXA 1JEXA 1EUEA 2I89A 1SH4A 3X32A 1J03A 1BLVA 1B5BA 3LF5A 3OZZB 2IBJA 3X33A 4B8NA 1B5AA 3X34A 1DO9A 2AXXA 1M2IA 3X35A 4HILA 4X8YA 1BFXA 1AQAA 1LTDA 1M2MA 2M33A 1J0QA 1FCBA 3MUSA 1AW3A 1B5MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MNY A;  1LCO A;  1CYO A;  1NX7 A;  1LQX A;  4HIN A;  1LR6 A;  2KEO A;  1F04 A;  1ICC A;  2I96 A;  1I8C A;  1MJ4 A;  2OZ0 A;  1ES1 A;  1EHB A;  1CXY A;  1M59 A;  1SOX A;  1I5U A;  3NER A;  1AWP A;  1KBI A;  1U9M A;  3KS0 A;  1U9U A;  1LJ0 A;  1F03 A;  1IB7 A;  1T0G A;  1LDC A;  1HKO A;  1IEU A;  1I87 A;  1M20 A;  1IET A;  1X3X A;  1AXX A;  1JEX A;  1EUE A;  2I89 A;  1SH4 A;  3X32 A;  1J03 A;  1BLV A;  1B5B A;  3LF5 A;  3OZZ B;  2IBJ A;  3X33 A;  4B8N A;  1B5A A;  3X34 A;  1DO9 A;  2AXX A;  1M2I A;  3X35 A;  4HIL A;  4X8Y A;  1BFX A;  1AQA A;  1LTD A;  1M2M A;  2M33 A;  1J0Q A;  1FCB A;  3MUS A;  1AW3 A;  1B5M A; 
#chains in the Genus database with same CATH topology
 1MNY A;  1LCO A;  1CYO A;  1NX7 A;  1LQX A;  4HIN A;  1LR6 A;  2KEO A;  1F04 A;  1ICC A;  2I96 A;  1I8C A;  1MJ4 A;  2OZ0 A;  1ES1 A;  1EHB A;  1CXY A;  1M59 A;  1SOX A;  1I5U A;  3NER A;  1AWP A;  1KBI A;  1U9M A;  3KS0 A;  1U9U A;  1LJ0 A;  1F03 A;  1IB7 A;  1T0G A;  1LDC A;  1HKO A;  1IEU A;  1I87 A;  1M20 A;  1IET A;  1X3X A;  1AXX A;  1JEX A;  1EUE A;  2I89 A;  1SH4 A;  3X32 A;  1J03 A;  1BLV A;  1B5B A;  3LF5 A;  3OZZ B;  2IBJ A;  3X33 A;  4B8N A;  1B5A A;  3X34 A;  1DO9 A;  2AXX A;  1M2I A;  3X35 A;  4HIL A;  4X8Y A;  1BFX A;  1AQA A;  1LTD A;  1M2M A;  2M33 A;  1J0Q A;  1FCB A;  3MUS A;  1AW3 A;  1B5M A; 
#chains in the Genus database with same CATH homology
 1MNY A;  1LCO A;  1CYO A;  1NX7 A;  1LQX A;  4HIN A;  1LR6 A;  2KEO A;  1F04 A;  1ICC A;  2I96 A;  1I8C A;  1MJ4 A;  2OZ0 A;  1ES1 A;  1EHB A;  1CXY A;  1M59 A;  1SOX A;  1I5U A;  3NER A;  1AWP A;  1KBI A;  1U9M A;  3KS0 A;  1U9U A;  1LJ0 A;  1F03 A;  1IB7 A;  1T0G A;  1LDC A;  1HKO A;  1IEU A;  1I87 A;  1M20 A;  1IET A;  1X3X A;  1AXX A;  1JEX A;  1EUE A;  2I89 A;  1SH4 A;  3X32 A;  1J03 A;  1BLV A;  1B5B A;  3LF5 A;  3OZZ B;  2IBJ A;  3X33 A;  4B8N A;  1B5A A;  3X34 A;  1DO9 A;  2AXX A;  1M2I A;  3X35 A;  4HIL A;  4X8Y A;  1BFX A;  1AQA A;  1LTD A;  1M2M A;  2M33 A;  1J0Q A;  1FCB A;  3MUS A;  1AW3 A;  1B5M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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