3ZFPA

Crystal structure of product-like, processed n-terminal protease npro with internal his-tag
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
148
structure length
148
Chain Sequence
MEPLYDKNGAVLFGEPSDTHPQSTLKLPHPRGEKEVIVGIRDLPRKGDCRTGNRLGPVSGLFVKPGPVFYQDYSGPVYHRAPLEQFKQAPMCEVTKRIGRVTGSDGNLYHMYVCTDGCILVKTAKHHHHHVLKWVYNVLDSPIWVTSC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords N-TERMINAL PROTEASE NPRO
publication title Crystal Structures of the Viral Protease Npro Imply Distinct Roles for the Catalytic Water in Catalysis
pubmed doi rcsb
source organism Pestivirus strain d32/00_hobi
total genus 36
structure length 148
sequence length 148
ec nomenclature ec 3.4.22.-:
pdb deposition date 2012-12-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.140.40 Mainly Beta Roll Spermidine Synthase; Chain: A, domain 2 Spermidine Synthase; Chain: A, domain 2 3zfpA02
3ZFNA 3ZFPA 3ZFTA 3ZFOA 3ZFQA 3ZFUA 4H9KA 4H9JA 3ZFRA
chains in the Genus database with same CATH superfamily
1XJ5A 2PT6A 2PWPA 2O07A 3RW9A 3C6KA 3ANXA 3C6MA 2O05A 3ZFQA 2O06A 4BP1A 2B2CA 3HUNA 4YV0A 1JQ3A 3HUMA 1INLA 4CXMA 3BWBA 3ZFTA 4YUZA 4YUWA 2E5WA 2ZSUA 3ZFOA 4YUYA 1TVFA 3O4FA 4YUVA 4BP3A 2PSSA 3BWCA 1MJFA 3ZFPA 4CWAA 2I7CA 3ZFUA 5B1SA 2HTEA 2O0LA 2PT9A 4H9KA 4H9JA 4F98A 4YV1A 4YUXA 4UOEA 3B7PA 2CMGA 4YV2A 2Q41A 3MFDA 3RIEA 1UIRA 3ZFRA 3ZFNA 2CMHA 1IY9A
chains in the Genus database with same CATH topology
3ZFNA 3ZFPA 3ZFTA 3MFDA 3ZFOA 3ZFQA 3ZFUA 4H9KA 4F98A 4H9JA 3ZFRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZFN A;  3ZFP A;  3ZFT A;  3ZFO A;  3ZFQ A;  3ZFU A;  4H9K A;  4H9J A;  3ZFR A; 
#chains in the Genus database with same CATH topology
 1XJ5 A;  2PT6 A;  2PWP A;  2O07 A;  3RW9 A;  3C6K A;  3ANX A;  3C6M A;  2O05 A;  3ZFQ A;  2O06 A;  4BP1 A;  2B2C A;  3HUN A;  4YV0 A;  1JQ3 A;  3HUM A;  1INL A;  4CXM A;  3BWB A;  3ZFT A;  4YUZ A;  4YUW A;  2E5W A;  2ZSU A;  3ZFO A;  4YUY A;  1TVF A;  3O4F A;  4YUV A;  4BP3 A;  2PSS A;  3BWC A;  1MJF A;  3ZFP A;  4CWA A;  2I7C A;  3ZFU A;  5B1S A;  2HTE A;  2O0L A;  2PT9 A;  4H9K A;  4H9J A;  4F98 A;  4YV1 A;  4YUX A;  4UOE A;  3B7P A;  2CMG A;  4YV2 A;  2Q41 A;  3MFD A;  3RIE A;  1UIR A;  3ZFR A;  3ZFN A;  2CMH A;  1IY9 A; 
#chains in the Genus database with same CATH homology
 3ZFN A;  3ZFP A;  3ZFT A;  3MFD A;  3ZFO A;  3ZFQ A;  3ZFU A;  4H9K A;  4F98 A;  4H9J A;  3ZFR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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