3ZIHA

Bacillus subtilis sepf, c-terminal domain
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
79
structure length
79
Chain Sequence
SSKVVLSEPRVYAEAQEIADHLKNRRAVVVNLQRIQHDQAKRIVDFLSGTVYAIGGDIQRIGSDIFLCTPDNVDVSGTI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords CELL DIVISION PROTEIN SEPF
publication title Structural and Genetic Analyses Reveal the Protein Sepf as a New Membrane Anchor for the Z Ring.
pubmed doi rcsb
source organism Bacillus subtilis
total genus 20
structure length 79
sequence length 79
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-01-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04472 SepF Cell division protein SepF
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.150 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 Translation Initiation Factor IF3 3zihA00
3P04A 3ZIEA 3ZIHA 3ZIGA 3ZIIA
chains in the Genus database with same CATH superfamily
1NJ8A 2BKYX 4WI1A 4HVCA 3TTFA 1LN4A 2EK0A 3ZIHA 3DSDA 2H9UA 3T1IA 2A2YA 3LVKB 4Z9EA 3TSUA 1HC7A 1RQ8A 1DCJA 2LXRA 1NJ2A 1NJ5A 2Q3VA 1NFHA 1NJ6A 2Z7CA 2IFEA 4FBWA 1NFJA 1JE3A 1NJ1A 1NH9A 4YDQA 4FBQA 4K87A 4K86A 2P9BA 3WBMA 1II7A 1Y9XA 3VTIA 1VM0A 3IABA 4FBKA 1H4QA 1S8EA 2GTCA 1TIGA 2L8YA 2CRQA 3LVJC 2EH1A 1H4SA 2LN3A 1XEZA 3ZIIA 1Y2IA 3IALA 2Y1BA 3TTCA 1PAVA 3IABB 4NZRM 3TSPA 4EO0A 1JDQA 3ZIGA 3HZ7A 4K88A 1VR4A 4FCXA 3VTHA 2M71A 4NZTM 3ZIEA 1H0YA 4NCXA 4HD0A 3TOEA 1UDVA 3TTDA 1H0XA 1JO0A 4YKEA 4OLFA 4HVZA 4TWAA 3TSQA 3U6YA 4Q15A 3P04A 3QKBA 1H4TA 3DSCA
chains in the Genus database with same CATH topology
4FBWA 4NZTM 3ZIEA 2LN3A 3TTDA 1XEZA 3ZIIA 3TTFA 3TTCA 3ZIHA 4FBQA 4NZRM 4YKEA 3T1IA 2P9BA 3TSPA 4EO0A 3TSUA 4HVZA 3TSQA 3VTIA 3ZIGA 3P04A 4FBKA 4FCXA 3VTHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P04 A;  3ZIE A;  3ZIH A;  3ZIG A;  3ZII A; 
#chains in the Genus database with same CATH topology
 1NJ8 A;  2BKY X;  4WI1 A;  4HVC A;  3TTF A;  1LN4 A;  2EK0 A;  3ZIH A;  3DSD A;  2H9U A;  3T1I A;  2A2Y A;  3LVK B;  4Z9E A;  3TSU A;  1HC7 A;  1RQ8 A;  1DCJ A;  2LXR A;  1NJ2 A;  1NJ5 A;  2Q3V A;  1NFH A;  1NJ6 A;  2Z7C A;  2IFE A;  4FBW A;  1NFJ A;  1JE3 A;  1NJ1 A;  1NH9 A;  4YDQ A;  4FBQ A;  4K87 A;  4K86 A;  2P9B A;  3WBM A;  1II7 A;  1Y9X A;  3VTI A;  1VM0 A;  3IAB A;  4FBK A;  1H4Q A;  1S8E A;  2GTC A;  1TIG A;  2L8Y A;  2CRQ A;  3LVJ C;  2EH1 A;  1H4S A;  2LN3 A;  1XEZ A;  3ZII A;  1Y2I A;  3IAL A;  2Y1B A;  3TTC A;  1PAV A;  3IAB B;  4NZR M;  3TSP A;  4EO0 A;  1JDQ A;  3ZIG A;  3HZ7 A;  4K88 A;  1VR4 A;  4FCX A;  3VTH A;  2M71 A;  4NZT M;  3ZIE A;  1H0Y A;  4NCX A;  4HD0 A;  3TOE A;  1UDV A;  3TTD A;  1H0X A;  1JO0 A;  4YKE A;  4OLF A;  4HVZ A;  4TWA A;  3TSQ A;  3U6Y A;  4Q15 A;  3P04 A;  3QKB A;  1H4T A;  3DSC A; 
#chains in the Genus database with same CATH homology
 4FBW A;  4NZT M;  3ZIE A;  2LN3 A;  3TTD A;  1XEZ A;  3ZII A;  3TTF A;  3TTC A;  3ZIH A;  4FBQ A;  4NZR M;  4YKE A;  3T1I A;  2P9B A;  3TSP A;  4EO0 A;  3TSU A;  4HVZ A;  3TSQ A;  3VTI A;  3ZIG A;  3P04 A;  4FBK A;  4FCX A;  3VTH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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