3ZNGB

Ankyrin repeat and socs-box protein 9 (asb9) in complex with elonginb and elonginc
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
95
structure length
84
Chain Sequence
YVKLISSDGHEFIVKREHALTSGTIKAMLNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords ANKYRIN REPEAT AND SOCS BOX PROTEIN 9
publication title Multimeric Complexes Among Ankyrin-Repeat and Socs-Box Protein 9 (Asb9), Elonginbc, and Cullin 5: Insights Into the Structure and Assembly of Ecs-Type Cullin-Ring E3 Ubiquitin Ligases.
pubmed doi rcsb
source organism Homo sapiens
total genus 21
structure length 84
sequence length 95
chains with identical sequence E
ec nomenclature
pdb deposition date 2013-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 3zngB00
4W9LB 2ASTA 3M5BA 2ASSA 5EUPA 5DAFA 3C6NA 3DRZA 4JTDB 3BIMA 2P1MA 3HTMA 4B9KB 5BXDA 2P1PA 3I3NA 4U77A 5FTAA 4W9HH 2E32B 1DSXA 4B9KE 4U2NA 5BXHA 5H7HA 1S1GA 3ZUNB 4W9EB 4W9FB 5HZGC 2YY9A 3OGLA 1EOFA 1FQVB 2MA9C 4BKTB 3FKCA 4W9HB 2P1NA 4CXIA 1T1DA 4N9F5 1FS1B 2NN2A 2P1QA 4CRHA 2C9WC 3L2OA 1A68A 3ZKJB 1BUOA 4WQOC 4W9GB 4B95B 3ZNGB 1P22B 2PPIA 4I6JC 4J8ZA 5A6RA 4UYIA 3HQIA 3ZRFB 1CS3A 4AJYC 3HVEA 1QDVA 4AWJB 4U2MA 4BGCA 2JZ3C 3HVEB 4HXIA 3ZTDB 2I2RA 2VPKA 1LDKD 4W9JB 3GA1A 3LUTB 2NZ0B 2P1OA 3LNMB 1EOEA 5HYWB 3OGMA 1EODA 3WSOB 2OVPA 1R2BA 3ZTCB 4AP2A 1EXBE 2FNJC 4BKSB 3C6PA 3ZRCB 4EOZA 2VKPA 3HU6A 3LBZA 1VCBB 1FS2B 1HV2A 4JTAB 1LQBB 3M52A 5LLIB 4JGHC 4CXJA 2Q81A 5IBKA 1R29A 5H7GA 2OVRA 2OVQA 3E4UA 2Z8HA 3OGKA 1NN7A 2IHCA 4W9IB 4CXTA 4UIJA 5A15A 3MKSA 3M4TA 4ZOUA 2R9RB 3V7DA 3OHUA 4W9KB 4CP3A 5DADA 3DCGB 1QDWA 5BO4C 4APFA 3C6OA 2A79B 4W9DB 3B84A 3KVTA 3M8VA 4W9CB 1LM8C 1NEXA 3OHVA 5JH5B 4JTCB 2E31B 2IZVC 1R28A 5BXBA 2IF5A
chains in the Genus database with same CATH superfamily
4W9LB 2ASTA 3DRXA 3M5BA 2ASSA 5EUPA 5DAFA 3C6NA 3DRZA 4JTDB 3BIMA 2P1MA 3HTMA 4B9KB 5BXDA 2P1PA 3I3NA 4U77A 5FTAA 4W9HH 2E32B 1DSXA 4B9KE 4U2NA 5BXHA 5H7HA 1S1GA 3ZUNB 4W9EB 4W9FB 5HZGC 2YY9A 3OGLA 1EOFA 1FQVB 2MA9C 4BKTB 3FKCA 4W9HB 2P1NA 4CXIA 1T1DA 4N9F5 1FS1B 2NN2A 2P1QA 4CRHA 2C9WC 3L2OA 1A68A 3ZKJB 1BUOA 4WQOC 4W9GB 4B95B 3ZNGB 1P22B 2PPIA 4I6JC 4J8ZA 5A6RA 4UYIA 3HQIA 3ZRFB 1CS3A 4AJYC 3HVEA 1QDVA 4AWJB 4U2MA 4BGCA 2JZ3C 4ZGCA 3HVEB 4HXIA 3ZTDB 2I2RA 2VPKA 1LDKD 4W9JB 3GA1A 3LUTB 2NZ0B 2P1OA 3LNMB 1EOEA 5HYWB 3OGMA 1EODA 3WSOB 2OVPA 1R2BA 3ZTCB 4AP2A 1EXBE 2FNJC 4BKSB 3C6PA 3ZRCB 4EOZA 2VKPA 3HU6A 3LBZA 1VCBB 1FS2B 1HV2A 4JTAB 1LQBB 3M52A 5LLIB 4JGHC 4CXJA 2Q81A 5IBKA 1R29A 5H7GA 2OVRA 2OVQA 3E4UA 2Z8HA 3OGKA 1NN7A 2IHCA 4W9IB 4CXTA 4UIJA 5A15A 3MKSA 3M4TA 4ZOUA 2R9RB 3V7DA 3OHUA 4W9KB 4CP3A 5DADA 3DCGB 1QDWA 5BO4C 4APFA 3C6OA 2A79B 3DRYA 4W9DB 3B84A 3KVTA 3M8VA 4W9CB 1LM8C 1NEXA 4YY8A 3OHVA 5JH5B 4JTCB 2E31B 2IZVC 1R28A 5BXBA 2IF5A
chains in the Genus database with same CATH topology
4W9LB 2ASTA 3DRXA 3M5BA 2ASSA 5EUPA 5DAFA 3C6NA 3DRZA 4JTDB 3BIMA 2P1MA 3HTMA 4B9KB 5BXDA 2P1PA 3I3NA 4U77A 5FTAA 4W9HH 2E32B 1DSXA 4B9KE 4U2NA 5BXHA 5H7HA 1S1GA 3ZUNB 4W9EB 4W9FB 5HZGC 2YY9A 3OGLA 1EOFA 1FQVB 2MA9C 4BKTB 3FKCA 4W9HB 2P1NA 4CXIA 1T1DA 4N9F5 1FS1B 2NN2A 2P1QA 4CRHA 2C9WC 3L2OA 1A68A 3ZKJB 1BUOA 4WQOC 4W9GB 4B95B 3ZNGB 1P22B 2PPIA 4I6JC 4J8ZA 5A6RA 4UYIA 3HQIA 3ZRFB 1CS3A 4AJYC 3HVEA 1QDVA 4AWJB 4U2MA 4BGCA 2JZ3C 4ZGCA 3HVEB 4HXIA 3ZTDB 2I2RA 2VPKA 1LDKD 4W9JB 3GA1A 3LUTB 2NZ0B 2P1OA 3LNMB 1EOEA 5HYWB 3OGMA 1EODA 3WSOB 2OVPA 1R2BA 3ZTCB 4AP2A 1EXBE 2FNJC 4BKSB 3C6PA 3ZRCB 4EOZA 2VKPA 3HU6A 3LBZA 1VCBB 1FS2B 1HV2A 4JTAB 1LQBB 3M52A 5LLIB 4JGHC 4CXJA 2Q81A 5IBKA 1R29A 5H7GA 2OVRA 2OVQA 3E4UA 2Z8HA 3OGKA 1NN7A 2IHCA 4W9IB 4CXTA 4UIJA 5A15A 3MKSA 3M4TA 4ZOUA 2R9RB 3V7DA 3OHUA 4W9KB 4CP3A 5DADA 3DCGB 1QDWA 5BO4C 4APFA 3C6OA 2A79B 3DRYA 4W9DB 3B84A 3KVTA 3M8VA 4W9CB 1LM8C 1NEXA 4YY8A 3OHVA 5JH5B 4JTCB 2E31B 2IZVC 1R28A 5BXBA 2IF5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4W9L B;  2AST A;  3M5B A;  2ASS A;  5EUP A;  5DAF A;  3C6N A;  3DRZ A;  4JTD B;  3BIM A;  2P1M A;  3HTM A;  4B9K B;  5BXD A;  2P1P A;  3I3N A;  4U77 A;  5FTA A;  4W9H H;  2E32 B;  1DSX A;  4B9K E;  4U2N A;  5BXH A;  5H7H A;  1S1G A;  3ZUN B;  4W9E B;  4W9F B;  5HZG C;  2YY9 A;  3OGL A;  1EOF A;  1FQV B;  2MA9 C;  4BKT B;  3FKC A;  4W9H B;  2P1N A;  4CXI A;  1T1D A;  4N9F 5;  1FS1 B;  2NN2 A;  2P1Q A;  4CRH A;  2C9W C;  3L2O A;  1A68 A;  3ZKJ B;  1BUO A;  4WQO C;  4W9G B;  4B95 B;  3ZNG B;  1P22 B;  2PPI A;  4I6J C;  4J8Z A;  5A6R A;  4UYI A;  3HQI A;  3ZRF B;  1CS3 A;  4AJY C;  3HVE A;  1QDV A;  4AWJ B;  4U2M A;  4BGC A;  2JZ3 C;  3HVE B;  4HXI A;  3ZTD B;  2I2R A;  2VPK A;  1LDK D;  4W9J B;  3GA1 A;  3LUT B;  2NZ0 B;  2P1O A;  3LNM B;  1EOE A;  5HYW B;  3OGM A;  1EOD A;  3WSO B;  2OVP A;  1R2B A;  3ZTC B;  4AP2 A;  1EXB E;  2FNJ C;  4BKS B;  3C6P A;  3ZRC B;  4EOZ A;  2VKP A;  3HU6 A;  3LBZ A;  1VCB B;  1FS2 B;  1HV2 A;  4JTA B;  1LQB B;  3M52 A;  5LLI B;  4JGH C;  4CXJ A;  2Q81 A;  5IBK A;  1R29 A;  5H7G A;  2OVR A;  2OVQ A;  3E4U A;  2Z8H A;  3OGK A;  1NN7 A;  2IHC A;  4W9I B;  4CXT A;  4UIJ A;  5A15 A;  3MKS A;  3M4T A;  4ZOU A;  2R9R B;  3V7D A;  3OHU A;  4W9K B;  4CP3 A;  5DAD A;  3DCG B;  1QDW A;  5BO4 C;  4APF A;  3C6O A;  2A79 B;  4W9D B;  3B84 A;  3KVT A;  3M8V A;  4W9C B;  1LM8 C;  1NEX A;  3OHV A;  5JH5 B;  4JTC B;  2E31 B;  2IZV C;  1R28 A;  5BXB A;  2IF5 A; 
#chains in the Genus database with same CATH topology
 4W9L B;  2AST A;  3DRX A;  3M5B A;  2ASS A;  5EUP A;  5DAF A;  3C6N A;  3DRZ A;  4JTD B;  3BIM A;  2P1M A;  3HTM A;  4B9K B;  5BXD A;  2P1P A;  3I3N A;  4U77 A;  5FTA A;  4W9H H;  2E32 B;  1DSX A;  4B9K E;  4U2N A;  5BXH A;  5H7H A;  1S1G A;  3ZUN B;  4W9E B;  4W9F B;  5HZG C;  2YY9 A;  3OGL A;  1EOF A;  1FQV B;  2MA9 C;  4BKT B;  3FKC A;  4W9H B;  2P1N A;  4CXI A;  1T1D A;  4N9F 5;  1FS1 B;  2NN2 A;  2P1Q A;  4CRH A;  2C9W C;  3L2O A;  1A68 A;  3ZKJ B;  1BUO A;  4WQO C;  4W9G B;  4B95 B;  3ZNG B;  1P22 B;  2PPI A;  4I6J C;  4J8Z A;  5A6R A;  4UYI A;  3HQI A;  3ZRF B;  1CS3 A;  4AJY C;  3HVE A;  1QDV A;  4AWJ B;  4U2M A;  4BGC A;  2JZ3 C;  4ZGC A;  3HVE B;  4HXI A;  3ZTD B;  2I2R A;  2VPK A;  1LDK D;  4W9J B;  3GA1 A;  3LUT B;  2NZ0 B;  2P1O A;  3LNM B;  1EOE A;  5HYW B;  3OGM A;  1EOD A;  3WSO B;  2OVP A;  1R2B A;  3ZTC B;  4AP2 A;  1EXB E;  2FNJ C;  4BKS B;  3C6P A;  3ZRC B;  4EOZ A;  2VKP A;  3HU6 A;  3LBZ A;  1VCB B;  1FS2 B;  1HV2 A;  4JTA B;  1LQB B;  3M52 A;  5LLI B;  4JGH C;  4CXJ A;  2Q81 A;  5IBK A;  1R29 A;  5H7G A;  2OVR A;  2OVQ A;  3E4U A;  2Z8H A;  3OGK A;  1NN7 A;  2IHC A;  4W9I B;  4CXT A;  4UIJ A;  5A15 A;  3MKS A;  3M4T A;  4ZOU A;  2R9R B;  3V7D A;  3OHU A;  4W9K B;  4CP3 A;  5DAD A;  3DCG B;  1QDW A;  5BO4 C;  4APF A;  3C6O A;  2A79 B;  3DRY A;  4W9D B;  3B84 A;  3KVT A;  3M8V A;  4W9C B;  1LM8 C;  1NEX A;  4YY8 A;  3OHV A;  5JH5 B;  4JTC B;  2E31 B;  2IZV C;  1R28 A;  5BXB A;  2IF5 A; 
#chains in the Genus database with same CATH homology
 4W9L B;  2AST A;  3DRX A;  3M5B A;  2ASS A;  5EUP A;  5DAF A;  3C6N A;  3DRZ A;  4JTD B;  3BIM A;  2P1M A;  3HTM A;  4B9K B;  5BXD A;  2P1P A;  3I3N A;  4U77 A;  5FTA A;  4W9H H;  2E32 B;  1DSX A;  4B9K E;  4U2N A;  5BXH A;  5H7H A;  1S1G A;  3ZUN B;  4W9E B;  4W9F B;  5HZG C;  2YY9 A;  3OGL A;  1EOF A;  1FQV B;  2MA9 C;  4BKT B;  3FKC A;  4W9H B;  2P1N A;  4CXI A;  1T1D A;  4N9F 5;  1FS1 B;  2NN2 A;  2P1Q A;  4CRH A;  2C9W C;  3L2O A;  1A68 A;  3ZKJ B;  1BUO A;  4WQO C;  4W9G B;  4B95 B;  3ZNG B;  1P22 B;  2PPI A;  4I6J C;  4J8Z A;  5A6R A;  4UYI A;  3HQI A;  3ZRF B;  1CS3 A;  4AJY C;  3HVE A;  1QDV A;  4AWJ B;  4U2M A;  4BGC A;  2JZ3 C;  4ZGC A;  3HVE B;  4HXI A;  3ZTD B;  2I2R A;  2VPK A;  1LDK D;  4W9J B;  3GA1 A;  3LUT B;  2NZ0 B;  2P1O A;  3LNM B;  1EOE A;  5HYW B;  3OGM A;  1EOD A;  3WSO B;  2OVP A;  1R2B A;  3ZTC B;  4AP2 A;  1EXB E;  2FNJ C;  4BKS B;  3C6P A;  3ZRC B;  4EOZ A;  2VKP A;  3HU6 A;  3LBZ A;  1VCB B;  1FS2 B;  1HV2 A;  4JTA B;  1LQB B;  3M52 A;  5LLI B;  4JGH C;  4CXJ A;  2Q81 A;  5IBK A;  1R29 A;  5H7G A;  2OVR A;  2OVQ A;  3E4U A;  2Z8H A;  3OGK A;  1NN7 A;  2IHC A;  4W9I B;  4CXT A;  4UIJ A;  5A15 A;  3MKS A;  3M4T A;  4ZOU A;  2R9R B;  3V7D A;  3OHU A;  4W9K B;  4CP3 A;  5DAD A;  3DCG B;  1QDW A;  5BO4 C;  4APF A;  3C6O A;  2A79 B;  3DRY A;  4W9D B;  3B84 A;  3KVT A;  3M8V A;  4W9C B;  1LM8 C;  1NEX A;  4YY8 A;  3OHV A;  5JH5 B;  4JTC B;  2E31 B;  2IZV C;  1R28 A;  5BXB A;  2IF5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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