3ZNSA

Hdac7 bound with tfmo inhibitor tmp942
Total Genus 134
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
sequence length
386
structure length
368
Chain Sequence
LPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQRL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords HISTONE DEACETYLASE 7
publication title Selective Class Iia Histone Deacetylase Inhibition Via a Non-Chelating Zinc Binding Group
pubmed doi rcsb
source organism Homo sapiens
total genus 134
structure length 368
sequence length 386
chains with identical sequence B, C
ec nomenclature ec 3.5.1.98: Histone deacetylase.
pdb deposition date 2013-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 3znsA00
3MZ6A 3EZPA 1C3SA 4ZUMA 5EEKA 2VQVA 3MENA 5G1CA 4QA1A 5EEIA 3ZNRA 4QA2A 1T64A 5DC7A 2VQJA 2V5WA 5G0HA 3SFFA 5BWZA 3MAXA 5FUEA 3RQDA 5G12A 3C10A 1C3RA 4ZUPA 5JI5A 5G0IA 3EW8A 5EFGA 5EENA 5G0GA 4RN0A 5ICNB 1ZZ3A 5G1BA 4QA4A 3EWFA 4BZ5A 4LY1A 5G3WA 2VCGA 3C0YA 3Q9BA 5EEMA 4QA5A 5LI3A 5G0XA 5FCWA 3MZ7A 1VKGA 5DC5A 3Q9EA 5G0YA 5G11A 2V5XA 4QA7A 5THVA 2VQQA 3EZTA 3F06A 3C0ZA 1C3PA 5G13A 5EF7A 5EF8A 4BKXB 4RN1A 4QA3A 5EFKB 5A2SA 4ZUOA 4CQFA 4BZ9A 2VQOA 4QA6A 5G17A 1ZZ1A 3MZ4A 3F07A 4BZ8A 1T67A 5G10A 3Q9CA 5EFNA 4ZUNA 2VQMA 4ZURA 3SFHA 2VQWG 5THUA 2GH6A 5G1AA 3F0RA 5G0JA 1W22A 4RN2A 5D1DA 5EFBD 5EEFA 3ZNSA 5D1BA 5IX0A 4BZ6A 5DC6A 5IWGA 5THSA 4LXZA 5DC8A 5THTA 4BZ7A 5EFJD 4A69A 3Q9FA 4QA0A 3MZ3A 4ZUQA 1T69A 4CBYA 5D1CA 4CBTA 1ZZ0A 5EFHA
chains in the Genus database with same CATH superfamily
3SL0A 4Q3UA 3MZ6A 1WOGA 4IXVA 3EZPA 1C3SA 4ZUMA 1CEVA 1HQ5A 5EEKA 3THHA 2VQVA 2A0MA 3MENA 5G1CA 4QA1A 5EEIA 3ZNRA 2AEBA 4QA2A 1T64A 5DC7A 2VQJA 4MYKA 2V5WA 5G0HA 3LP7A 3SFFA 1P8QA 5BWZA 3MAXA 1T4RA 5FUEA 3MFWA 2RLAA 4MXRA 5G12A 1TBHA 2EIVA 5RLAA 3E8QA 3RQDA 3C10A 4GSZA 1T5FA 3F80A 4HWWA 1HQXA 4Q3TA 1C3RA 4IE3A 4Q3RA 4ZUPA 1HQGA 1P8OA 5JI5A 5G0IA 1TBJA 3EW8A 5HJAA 3LP4A 3GN0A 5EFGA 3E6VA 5EENA 4IU5A 1TA1A 4RN0A 5G0GA 5ICNB 1ZZ3A 5G1BA 3SL1A 4QA4A 3EWFA 4MYNA 4GSMA 4BZ5A 4RHIA 4LY1A 5G3WA 1GQ6A 4Q3SA 1HQHA 2VCGA 3C0YA 3RLAA 2PHOA 3Q9BA 1T4PA 1P8NA 1T5GA 5EEMA 4QA5A 4MYLA 4Q3VA 5LI3A 5G0XA 3DJ8A 3MMRA 5FCWA 3GMZA 4GSVA 3MZ7A 4ITYA 3LHLA 5CEVA 1VKGA 5DC5A 3Q9EA 5G0YA 1D3VA 2V5XA 3E8ZA 4QA7A 5G11A 5THVA 3E6KA 4FCIA 3NIQA 2EF5A 1R1OA 4RHJA 2VQQA 1T4TA 1XFKA 2PHAA 1T4SA 4IU0A 3EZTA 3F06A 3C0ZA 1C3PA 2EF4A 5G13A 4RHKA 3SJTA 5EF7A 1WOHA 4GWDA 5EF8A 4RN1A 4QA3A 2ZAVA 4Q3QA 4Q3RC 5EFKB 4RLAA 4BKXB 5A2SA 4ZUOA 1PQ3A 4Q41A 4CQFA 1WVBA 3NIPA 4BZ9A 2PLLA 2VQOA 2CEVA 4QA6A 5G17A 1ZZ1A 3E9BA 3MZ4A 3PZLA 3F07A 3SKKA 4Q40A 4BZ8A 4IU4A 1T67A 5G10A 3MJLA 1RLAA 3Q9CA 4MYFA 1TBLA 5EFNA 2VQMA 4G3HA 4ZUNA 4ZURA 1P8MA 1P8RA 1P8PA 5HJ9A 3SFHA 4DZ4A 2VQWG 4FCKA 4GWCA 5THUA 1WOIA 2GH6A 4RHMA 5G1AA 3F0RA 1ZPEA 4RHLA 5G0JA 1W22A 1ZPGA 3NIOA 4RN2A 4IE1A 5D1DA 1HQFA 5EFBD 5EEFA 3TH7A 3ZNSA 5D1BA 3M1RA 4I06A 4Q3PA 4HXQA 5IX0A 1GQ7A 4IE2A 4BZ6A 3MFVA 5DC6A 5IWGA 1WVAA 4HZEA 5THSA 3CEVA 4LXZA 5DC8A 3THEA 3KV2A 3TF3A 4Q42A 5THTA 4RHQA 4CEVA 4BZ7A 5EFJD 4A69A 3Q9FA 4QA0A 3MZ3A 4ZUQA 1T69A 4IU1A 1P8SA 4IXUA 3THJA 4CBYA 5D1CA 4CBTA 1ZZ0A 5EFHA
chains in the Genus database with same CATH topology
3MZ6A 3EZPA 1C3SA 4ZUMA 5EEKA 2VQVA 3MENA 5G1CA 4QA1A 5EEIA 3ZNRA 4QA2A 1T64A 5DC7A 2VQJA 2V5WA 5G0HA 3SFFA 5BWZA 3MAXA 5FUEA 3RQDA 5G12A 3C10A 1C3RA 4ZUPA 5JI5A 5G0IA 3EW8A 5EFGA 5EENA 5G0GA 4RN0A 5ICNB 1ZZ3A 5G1BA 4QA4A 3EWFA 4BZ5A 4LY1A 5G3WA 2VCGA 3C0YA 3Q9BA 5EEMA 4QA5A 5LI3A 5G0XA 5FCWA 3MZ7A 1VKGA 5DC5A 3Q9EA 5G0YA 5G11A 2V5XA 4QA7A 5THVA 2VQQA 3EZTA 3F06A 3C0ZA 1C3PA 5G13A 5EF7A 5EF8A 4BKXB 4RN1A 4QA3A 5EFKB 5A2SA 4ZUOA 4CQFA 4BZ9A 2VQOA 4QA6A 5G17A 1ZZ1A 3MZ4A 3F07A 4BZ8A 1T67A 5G10A 3Q9CA 5EFNA 4ZUNA 2VQMA 4ZURA 3SFHA 2VQWG 5THUA 2GH6A 5G1AA 3F0RA 5G0JA 1W22A 4RN2A 5D1DA 5EFBD 5EEFA 3ZNSA 5D1BA 5IX0A 4BZ6A 5DC6A 5IWGA 5THSA 4LXZA 5DC8A 5THTA 4BZ7A 5EFJD 4A69A 3Q9FA 4QA0A 3MZ3A 4ZUQA 1T69A 4CBYA 5D1CA 4CBTA 1ZZ0A 5EFHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MZ6 A;  3EZP A;  1C3S A;  4ZUM A;  5EEK A;  2VQV A;  3MEN A;  5G1C A;  4QA1 A;  5EEI A;  3ZNR A;  4QA2 A;  1T64 A;  5DC7 A;  2VQJ A;  2V5W A;  5G0H A;  3SFF A;  5BWZ A;  3MAX A;  5FUE A;  3RQD A;  5G12 A;  3C10 A;  1C3R A;  4ZUP A;  5JI5 A;  5G0I A;  3EW8 A;  5EFG A;  5EEN A;  5G0G A;  4RN0 A;  5ICN B;  1ZZ3 A;  5G1B A;  4QA4 A;  3EWF A;  4BZ5 A;  4LY1 A;  5G3W A;  2VCG A;  3C0Y A;  3Q9B A;  5EEM A;  4QA5 A;  5LI3 A;  5G0X A;  5FCW A;  3MZ7 A;  1VKG A;  5DC5 A;  3Q9E A;  5G0Y A;  5G11 A;  2V5X A;  4QA7 A;  5THV A;  2VQQ A;  3EZT A;  3F06 A;  3C0Z A;  1C3P A;  5G13 A;  5EF7 A;  5EF8 A;  4BKX B;  4RN1 A;  4QA3 A;  5EFK B;  5A2S A;  4ZUO A;  4CQF A;  4BZ9 A;  2VQO A;  4QA6 A;  5G17 A;  1ZZ1 A;  3MZ4 A;  3F07 A;  4BZ8 A;  1T67 A;  5G10 A;  3Q9C A;  5EFN A;  4ZUN A;  2VQM A;  4ZUR A;  3SFH A;  2VQW G;  5THU A;  2GH6 A;  5G1A A;  3F0R A;  5G0J A;  1W22 A;  4RN2 A;  5D1D A;  5EFB D;  5EEF A;  3ZNS A;  5D1B A;  5IX0 A;  4BZ6 A;  5DC6 A;  5IWG A;  5THS A;  4LXZ A;  5DC8 A;  5THT A;  4BZ7 A;  5EFJ D;  4A69 A;  3Q9F A;  4QA0 A;  3MZ3 A;  4ZUQ A;  1T69 A;  4CBY A;  5D1C A;  4CBT A;  1ZZ0 A;  5EFH A; 
#chains in the Genus database with same CATH topology
 3SL0 A;  4Q3U A;  3MZ6 A;  1WOG A;  4IXV A;  3EZP A;  1C3S A;  4ZUM A;  1CEV A;  1HQ5 A;  5EEK A;  3THH A;  2VQV A;  2A0M A;  3MEN A;  5G1C A;  4QA1 A;  5EEI A;  3ZNR A;  2AEB A;  4QA2 A;  1T64 A;  5DC7 A;  2VQJ A;  4MYK A;  2V5W A;  5G0H A;  3LP7 A;  3SFF A;  1P8Q A;  5BWZ A;  3MAX A;  1T4R A;  5FUE A;  3MFW A;  2RLA A;  4MXR A;  5G12 A;  1TBH A;  2EIV A;  5RLA A;  3E8Q A;  3RQD A;  3C10 A;  4GSZ A;  1T5F A;  3F80 A;  4HWW A;  1HQX A;  4Q3T A;  1C3R A;  4IE3 A;  4Q3R A;  4ZUP A;  1HQG A;  1P8O A;  5JI5 A;  5G0I A;  1TBJ A;  3EW8 A;  5HJA A;  3LP4 A;  3GN0 A;  5EFG A;  3E6V A;  5EEN A;  4IU5 A;  1TA1 A;  4RN0 A;  5G0G A;  5ICN B;  1ZZ3 A;  5G1B A;  3SL1 A;  4QA4 A;  3EWF A;  4MYN A;  4GSM A;  4BZ5 A;  4RHI A;  4LY1 A;  5G3W A;  1GQ6 A;  4Q3S A;  1HQH A;  2VCG A;  3C0Y A;  3RLA A;  2PHO A;  3Q9B A;  1T4P A;  1P8N A;  1T5G A;  5EEM A;  4QA5 A;  4MYL A;  4Q3V A;  5LI3 A;  5G0X A;  3DJ8 A;  3MMR A;  5FCW A;  3GMZ A;  4GSV A;  3MZ7 A;  4ITY A;  3LHL A;  5CEV A;  1VKG A;  5DC5 A;  3Q9E A;  5G0Y A;  1D3V A;  2V5X A;  3E8Z A;  4QA7 A;  5G11 A;  5THV A;  3E6K A;  4FCI A;  3NIQ A;  2EF5 A;  1R1O A;  4RHJ A;  2VQQ A;  1T4T A;  1XFK A;  2PHA A;  1T4S A;  4IU0 A;  3EZT A;  3F06 A;  3C0Z A;  1C3P A;  2EF4 A;  5G13 A;  4RHK A;  3SJT A;  5EF7 A;  1WOH A;  4GWD A;  5EF8 A;  4RN1 A;  4QA3 A;  2ZAV A;  4Q3Q A;  4Q3R C;  5EFK B;  4RLA A;  4BKX B;  5A2S A;  4ZUO A;  1PQ3 A;  4Q41 A;  4CQF A;  1WVB A;  3NIP A;  4BZ9 A;  2PLL A;  2VQO A;  2CEV A;  4QA6 A;  5G17 A;  1ZZ1 A;  3E9B A;  3MZ4 A;  3PZL A;  3F07 A;  3SKK A;  4Q40 A;  4BZ8 A;  4IU4 A;  1T67 A;  5G10 A;  3MJL A;  1RLA A;  3Q9C A;  4MYF A;  1TBL A;  5EFN A;  2VQM A;  4G3H A;  4ZUN A;  4ZUR A;  1P8M A;  1P8R A;  1P8P A;  5HJ9 A;  3SFH A;  4DZ4 A;  2VQW G;  4FCK A;  4GWC A;  5THU A;  1WOI A;  2GH6 A;  4RHM A;  5G1A A;  3F0R A;  1ZPE A;  4RHL A;  5G0J A;  1W22 A;  1ZPG A;  3NIO A;  4RN2 A;  4IE1 A;  5D1D A;  1HQF A;  5EFB D;  5EEF A;  3TH7 A;  3ZNS A;  5D1B A;  3M1R A;  4I06 A;  4Q3P A;  4HXQ A;  5IX0 A;  1GQ7 A;  4IE2 A;  4BZ6 A;  3MFV A;  5DC6 A;  5IWG A;  1WVA A;  4HZE A;  5THS A;  3CEV A;  4LXZ A;  5DC8 A;  3THE A;  3KV2 A;  3TF3 A;  4Q42 A;  5THT A;  4RHQ A;  4CEV A;  4BZ7 A;  5EFJ D;  4A69 A;  3Q9F A;  4QA0 A;  3MZ3 A;  4ZUQ A;  1T69 A;  4IU1 A;  1P8S A;  4IXU A;  3THJ A;  4CBY A;  5D1C A;  4CBT A;  1ZZ0 A;  5EFH A; 
#chains in the Genus database with same CATH homology
 3MZ6 A;  3EZP A;  1C3S A;  4ZUM A;  5EEK A;  2VQV A;  3MEN A;  5G1C A;  4QA1 A;  5EEI A;  3ZNR A;  4QA2 A;  1T64 A;  5DC7 A;  2VQJ A;  2V5W A;  5G0H A;  3SFF A;  5BWZ A;  3MAX A;  5FUE A;  3RQD A;  5G12 A;  3C10 A;  1C3R A;  4ZUP A;  5JI5 A;  5G0I A;  3EW8 A;  5EFG A;  5EEN A;  5G0G A;  4RN0 A;  5ICN B;  1ZZ3 A;  5G1B A;  4QA4 A;  3EWF A;  4BZ5 A;  4LY1 A;  5G3W A;  2VCG A;  3C0Y A;  3Q9B A;  5EEM A;  4QA5 A;  5LI3 A;  5G0X A;  5FCW A;  3MZ7 A;  1VKG A;  5DC5 A;  3Q9E A;  5G0Y A;  5G11 A;  2V5X A;  4QA7 A;  5THV A;  2VQQ A;  3EZT A;  3F06 A;  3C0Z A;  1C3P A;  5G13 A;  5EF7 A;  5EF8 A;  4BKX B;  4RN1 A;  4QA3 A;  5EFK B;  5A2S A;  4ZUO A;  4CQF A;  4BZ9 A;  2VQO A;  4QA6 A;  5G17 A;  1ZZ1 A;  3MZ4 A;  3F07 A;  4BZ8 A;  1T67 A;  5G10 A;  3Q9C A;  5EFN A;  4ZUN A;  2VQM A;  4ZUR A;  3SFH A;  2VQW G;  5THU A;  2GH6 A;  5G1A A;  3F0R A;  5G0J A;  1W22 A;  4RN2 A;  5D1D A;  5EFB D;  5EEF A;  3ZNS A;  5D1B A;  5IX0 A;  4BZ6 A;  5DC6 A;  5IWG A;  5THS A;  4LXZ A;  5DC8 A;  5THT A;  4BZ7 A;  5EFJ D;  4A69 A;  3Q9F A;  4QA0 A;  3MZ3 A;  4ZUQ A;  1T69 A;  4CBY A;  5D1C A;  4CBT A;  1ZZ0 A;  5EFH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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