3ZOHA

Crystal structure of fmn-binding protein (yp_005476) from thermus thermophilus with bound 1-cyclohex-2-enone
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
178
structure length
178
Chain Sequence
MRSYRAQGPLPGFYHYYPGVPAVVGVRVEERVNFCPAVWNTGLSADPPLFGVSISPKRFTHGLLLKARRFSASFHPFGQKDLVHWLGSHSGREVDKGQAPHFLGHTGVPILEGAYAAYELELLEVHTFGDHDLFVGRVVAVWEEEGLLDEKGRPKPGLALLYYGKGLYGRPAEETFAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations.
pubmed doi rcsb
molecule tags Fmn-binding protein
source organism Thermus thermophilus
molecule keywords FLAVOREDOXIN
total genus 36
structure length 178
sequence length 178
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3zohA00
1W9AA 2HHZA 3R5WA 4HMXA 3U5WA 2HQ7A 2RDEA 3BPKA 3RH7A 2AQ6A 2PTFA 3AMFA 3R5RA 2RE7A 2Q9KA 3F7EA 1JNWA 1G77A 3ZODA 1I0SA 3IN6A 3U34A 2D36A 1WV4A 3FKHA 1G76A 3HY8A 5ESCA 3HMZA 1DNLA 1NRGA 2R0XA 1WGBA 1Y30A 3A6QA 4HMVA 3R5ZA 1G78A 4ZKYA 2ECRA 3ZOGA 2E83A 2D5MA 3ZOEA 2QEAA 3TGVA 3DB0A 3ZOHA 1W3PA 4YWNA 1YLNA 5CHEC 1XXOA 1G79A 3SWJA 2FG9A 1T9MA 3BA3A 1TY9A 4QVBA 1AXJA 1XHNA 2ECUA 3EC6A 1EJEA 3CP3A 4N7RC 3ZOFA 2D37A 4Y9IA 2VPAA 2FURA 1VL7A 3PFTA 1RFEA 2IMLA 4IRAA 2A2JA 3U35A 3R5PA 2NR4A 3K87A 3H96A 1RZ1A 2D38A 5BNCA 3GASA 1W3RA 1W3OA 1RZ0A 2X1KA 4R82A 4YBNA 3U0IA 3CB0A 2GJGA 4HMSA 4HMTA 3R5LA 3VY5A 4HMWA 3KYFA 3VY2A 3KYGA 3AWHA 3DNHA 2X1JA 4XHYA 1YOAA 3B5MA 1CI0A 3VYAA 3FGEA 5CHOA 3BNKA 3A6RA 3NFWA 4Z85A 3E4VA 5JABA 2I02A 4XJ2A 1FLMA 1USCA 1I0RA 1W3QA 2ED4A 3ZOCA 2I51A 2HTDA 3A20A 3K88A 2OL5A 2IABA 1WLIA 2HTIA 1WLKA 2HQ9A 4F07A 2OU5A 2ARZA 3DMBA 2ASFA 4L82A 2FHQA 2R6VA 4HMUA 2IG6A 3K86A 4HX6A 1USFA 3R5YA 2QCKA
chains in the Genus database with same CATH superfamily
1W9AA 2HHZA 3R5WA 3HE1A 4HMXA 4MTKA 3U5WA 2HQ7A 2RDEA 3BPKA 3RH7A 2AQ6A 2PTFA 3AMFA 3R5RA 2RE7A 2Q9KA 3F7EA 1JNWA 1G77A 2L1TA 3ZODA 1I0SA 4UHVA 3IN6A 3U34A 2D36A 1WV4A 3FKHA 1G76A 3HY8A 5ESCA 3HMZA 2GUJA 1DNLA 1NRGA 2R0XA 1WGBA 1Y30A 3A6QA 4HMVA 3R5ZA 1G78A 4ZKYA 2ECRA 3ZOGA 2E83A 2K4QA 2D5MA 3ZOEA 2QEAA 3TGVA 4TV4A 3DB0A 3EAAA 3ZOHA 1W3PA 4YWNA 1Y12A 1YLNA 5CHEC 1XXOA 1G79A 3SWJA 2FG9A 1T9MA 3BA3A 1TY9A 4QVBA 1AXJA 1XHNA 2ECUA 3EC6A 1EJEA 3CP3A 4N7RC 3V4HA 3ZOFA 2D37A 4Y9IA 2VPAA 2FURA 1VL7A 3PFTA 1RFEA 2IMLA 4IRAA 2A2JA 3U35A 3R5PA 2NR4A 3K87A 3H96A 1RZ1A 2D38A 5BNCA 3GASA 1W3RA 1W3OA 1RZ0A 2X1KA 4R82A 4W64A 4YBNA 3U0IA 3CB0A 4HKHA 2GJGA 4HMSA 4HMTA 3R5LA 3VY5A 4HMWA 3KYFA 3VY2A 3KYGA 3AWHA 3DNHA 2X1JA 4XHYA 1YOAA 3B5MA 2P5ZX 1CI0A 3VYAA 3FGEA 5CHOA 3BNKA 3A6RA 3NFWA 4Z85A 3E4VA 5JABA 2I02A 4XJ2A 1FLMA 1USCA 1I0RA 1W3QA 2ED4A 3ZOCA 2I51A 2HTDA 3A20A 3K88A 2OL5A 2IABA 1WLIA 2HTIA 1WLKA 2HQ9A 4F07A 2OU5A 2ARZA 3DMBA 2ASFA 4L82A 2FHQA 2R6VA 4HMUA 2IG6A 3K86A 4HX6A 1USFA 3R5YA 2QCKA
chains in the Genus database with same CATH topology
1W9AA 2HHZA 3R5WA 4HMXA 3U5WA 2HQ7A 2RDEA 3BPKA 3RH7A 2AQ6A 2PTFA 3AMFA 3R5RA 2RE7A 2Q9KA 3F7EA 1JNWA 1G77A 3ZODA 1I0SA 3IN6A 3U34A 2D36A 1WV4A 3FKHA 1G76A 3HY8A 5ESCA 3HMZA 1DNLA 1NRGA 2R0XA 1WGBA 1Y30A 3A6QA 4HMVA 3R5ZA 1G78A 4ZKYA 2ECRA 3ZOGA 2E83A 2D5MA 3ZOEA 2QEAA 3TGVA 3DB0A 3ZOHA 1W3PA 4YWNA 1YLNA 5CHEC 1XXOA 1G79A 3SWJA 2FG9A 1T9MA 3BA3A 1TY9A 4QVBA 1AXJA 1XHNA 2ECUA 3EC6A 1EJEA 3CP3A 4N7RC 3ZOFA 2D37A 4Y9IA 2VPAA 2FURA 1VL7A 3PFTA 1RFEA 2IMLA 4IRAA 2A2JA 3U35A 3R5PA 2NR4A 3K87A 3H96A 1RZ1A 2D38A 5BNCA 3GASA 1W3RA 1W3OA 1RZ0A 2X1KA 4R82A 4YBNA 3U0IA 3CB0A 2GJGA 4HMSA 4HMTA 3R5LA 3VY5A 4HMWA 3KYFA 3VY2A 3KYGA 3AWHA 3DNHA 2X1JA 4XHYA 1YOAA 3B5MA 1CI0A 3VYAA 3FGEA 5CHOA 3BNKA 3A6RA 3NFWA 4Z85A 3E4VA 5JABA 2I02A 4XJ2A 1FLMA 1USCA 1I0RA 1W3QA 2ED4A 3ZOCA 2I51A 2HTDA 3A20A 3K88A 2OL5A 2IABA 1WLIA 2HTIA 1WLKA 2HQ9A 4F07A 2OU5A 2ARZA 3DMBA 2ASFA 4L82A 2FHQA 2R6VA 4HMUA 2IG6A 3K86A 4HX6A 1USFA 3R5YA 2QCKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W9A A;  2HHZ A;  3R5W A;  4HMX A;  3U5W A;  2HQ7 A;  2RDE A;  3BPK A;  3RH7 A;  2AQ6 A;  2PTF A;  3AMF A;  3R5R A;  2RE7 A;  2Q9K A;  3F7E A;  1JNW A;  1G77 A;  3ZOD A;  1I0S A;  3IN6 A;  3U34 A;  2D36 A;  1WV4 A;  3FKH A;  1G76 A;  3HY8 A;  5ESC A;  3HMZ A;  1DNL A;  1NRG A;  2R0X A;  1WGB A;  1Y30 A;  3A6Q A;  4HMV A;  3R5Z A;  1G78 A;  4ZKY A;  2ECR A;  3ZOG A;  2E83 A;  2D5M A;  3ZOE A;  2QEA A;  3TGV A;  3DB0 A;  3ZOH A;  1W3P A;  4YWN A;  1YLN A;  5CHE C;  1XXO A;  1G79 A;  3SWJ A;  2FG9 A;  1T9M A;  3BA3 A;  1TY9 A;  4QVB A;  1AXJ A;  1XHN A;  2ECU A;  3EC6 A;  1EJE A;  3CP3 A;  4N7R C;  3ZOF A;  2D37 A;  4Y9I A;  2VPA A;  2FUR A;  1VL7 A;  3PFT A;  1RFE A;  2IML A;  4IRA A;  2A2J A;  3U35 A;  3R5P A;  2NR4 A;  3K87 A;  3H96 A;  1RZ1 A;  2D38 A;  5BNC A;  3GAS A;  1W3R A;  1W3O A;  1RZ0 A;  2X1K A;  4R82 A;  4YBN A;  3U0I A;  3CB0 A;  2GJG A;  4HMS A;  4HMT A;  3R5L A;  3VY5 A;  4HMW A;  3KYF A;  3VY2 A;  3KYG A;  3AWH A;  3DNH A;  2X1J A;  4XHY A;  1YOA A;  3B5M A;  1CI0 A;  3VYA A;  3FGE A;  5CHO A;  3BNK A;  3A6R A;  3NFW A;  4Z85 A;  3E4V A;  5JAB A;  2I02 A;  4XJ2 A;  1FLM A;  1USC A;  1I0R A;  1W3Q A;  2ED4 A;  3ZOC A;  2I51 A;  2HTD A;  3A20 A;  3K88 A;  2OL5 A;  2IAB A;  1WLI A;  2HTI A;  1WLK A;  2HQ9 A;  4F07 A;  2OU5 A;  2ARZ A;  3DMB A;  2ASF A;  4L82 A;  2FHQ A;  2R6V A;  4HMU A;  2IG6 A;  3K86 A;  4HX6 A;  1USF A;  3R5Y A;  2QCK A; 
#chains in the Genus database with same CATH topology
 1W9A A;  2HHZ A;  3R5W A;  3HE1 A;  4HMX A;  4MTK A;  3U5W A;  2HQ7 A;  2RDE A;  3BPK A;  3RH7 A;  2AQ6 A;  2PTF A;  3AMF A;  3R5R A;  2RE7 A;  2Q9K A;  3F7E A;  1JNW A;  1G77 A;  2L1T A;  3ZOD A;  1I0S A;  4UHV A;  3IN6 A;  3U34 A;  2D36 A;  1WV4 A;  3FKH A;  1G76 A;  3HY8 A;  5ESC A;  3HMZ A;  2GUJ A;  1DNL A;  1NRG A;  2R0X A;  1WGB A;  1Y30 A;  3A6Q A;  4HMV A;  3R5Z A;  1G78 A;  4ZKY A;  2ECR A;  3ZOG A;  2E83 A;  2K4Q A;  2D5M A;  3ZOE A;  2QEA A;  3TGV A;  4TV4 A;  3DB0 A;  3EAA A;  3ZOH A;  1W3P A;  4YWN A;  1Y12 A;  1YLN A;  5CHE C;  1XXO A;  1G79 A;  3SWJ A;  2FG9 A;  1T9M A;  3BA3 A;  1TY9 A;  4QVB A;  1AXJ A;  1XHN A;  2ECU A;  3EC6 A;  1EJE A;  3CP3 A;  4N7R C;  3V4H A;  3ZOF A;  2D37 A;  4Y9I A;  2VPA A;  2FUR A;  1VL7 A;  3PFT A;  1RFE A;  2IML A;  4IRA A;  2A2J A;  3U35 A;  3R5P A;  2NR4 A;  3K87 A;  3H96 A;  1RZ1 A;  2D38 A;  5BNC A;  3GAS A;  1W3R A;  1W3O A;  1RZ0 A;  2X1K A;  4R82 A;  4W64 A;  4YBN A;  3U0I A;  3CB0 A;  4HKH A;  2GJG A;  4HMS A;  4HMT A;  3R5L A;  3VY5 A;  4HMW A;  3KYF A;  3VY2 A;  3KYG A;  3AWH A;  3DNH A;  2X1J A;  4XHY A;  1YOA A;  3B5M A;  2P5Z X;  1CI0 A;  3VYA A;  3FGE A;  5CHO A;  3BNK A;  3A6R A;  3NFW A;  4Z85 A;  3E4V A;  5JAB A;  2I02 A;  4XJ2 A;  1FLM A;  1USC A;  1I0R A;  1W3Q A;  2ED4 A;  3ZOC A;  2I51 A;  2HTD A;  3A20 A;  3K88 A;  2OL5 A;  2IAB A;  1WLI A;  2HTI A;  1WLK A;  2HQ9 A;  4F07 A;  2OU5 A;  2ARZ A;  3DMB A;  2ASF A;  4L82 A;  2FHQ A;  2R6V A;  4HMU A;  2IG6 A;  3K86 A;  4HX6 A;  1USF A;  3R5Y A;  2QCK A; 
#chains in the Genus database with same CATH homology
 1W9A A;  2HHZ A;  3R5W A;  4HMX A;  3U5W A;  2HQ7 A;  2RDE A;  3BPK A;  3RH7 A;  2AQ6 A;  2PTF A;  3AMF A;  3R5R A;  2RE7 A;  2Q9K A;  3F7E A;  1JNW A;  1G77 A;  3ZOD A;  1I0S A;  3IN6 A;  3U34 A;  2D36 A;  1WV4 A;  3FKH A;  1G76 A;  3HY8 A;  5ESC A;  3HMZ A;  1DNL A;  1NRG A;  2R0X A;  1WGB A;  1Y30 A;  3A6Q A;  4HMV A;  3R5Z A;  1G78 A;  4ZKY A;  2ECR A;  3ZOG A;  2E83 A;  2D5M A;  3ZOE A;  2QEA A;  3TGV A;  3DB0 A;  3ZOH A;  1W3P A;  4YWN A;  1YLN A;  5CHE C;  1XXO A;  1G79 A;  3SWJ A;  2FG9 A;  1T9M A;  3BA3 A;  1TY9 A;  4QVB A;  1AXJ A;  1XHN A;  2ECU A;  3EC6 A;  1EJE A;  3CP3 A;  4N7R C;  3ZOF A;  2D37 A;  4Y9I A;  2VPA A;  2FUR A;  1VL7 A;  3PFT A;  1RFE A;  2IML A;  4IRA A;  2A2J A;  3U35 A;  3R5P A;  2NR4 A;  3K87 A;  3H96 A;  1RZ1 A;  2D38 A;  5BNC A;  3GAS A;  1W3R A;  1W3O A;  1RZ0 A;  2X1K A;  4R82 A;  4YBN A;  3U0I A;  3CB0 A;  2GJG A;  4HMS A;  4HMT A;  3R5L A;  3VY5 A;  4HMW A;  3KYF A;  3VY2 A;  3KYG A;  3AWH A;  3DNH A;  2X1J A;  4XHY A;  1YOA A;  3B5M A;  1CI0 A;  3VYA A;  3FGE A;  5CHO A;  3BNK A;  3A6R A;  3NFW A;  4Z85 A;  3E4V A;  5JAB A;  2I02 A;  4XJ2 A;  1FLM A;  1USC A;  1I0R A;  1W3Q A;  2ED4 A;  3ZOC A;  2I51 A;  2HTD A;  3A20 A;  3K88 A;  2OL5 A;  2IAB A;  1WLI A;  2HTI A;  1WLK A;  2HQ9 A;  4F07 A;  2OU5 A;  2ARZ A;  3DMB A;  2ASF A;  4L82 A;  2FHQ A;  2R6V A;  4HMU A;  2IG6 A;  3K86 A;  4HX6 A;  1USF A;  3R5Y A;  2QCK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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