3ZRJA

Complex of clpv n-domain with vipb peptide
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
162
structure length
160
Chain Sequence
HHTDPIRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIASTYSREQVTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHFAMILSDSAET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular Basis for the Unique Role of the Aaa+ Chaperone Clpv in Type Vi Protein Secretion.
pubmed doi rcsb
molecule tags Chaperone/peptide
source organism Vibrio cholerae
molecule keywords CLPB PROTEIN
total genus 64
structure length 160
sequence length 162
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-06-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1780.10 Mainly Alpha Orthogonal Bundle Double Clp-N motif Clp, N-terminal domain 3zrjA01
4HH5A 3WDCA 1R6CX 5HBNA 4Y0BA 1KHYA 1MBUA 3ZRIA 1KSFX 2Y1QA 3WDEA 1QVRA 5GUIA 1R6OA 1LZWB 4UQWA 1R6QA 1K6KA 2K77A 4Y0CA 1R6BX 1MG9B 3PXGA 4IRFA 3FESA 2Y1RA 1MBVA 3FH2A 4HH6A 3WDBA 4IODA 3WDDA 3ZRJA 1MBXA 4P15A
chains in the Genus database with same CATH superfamily
4HH5A 3WDCA 1R6CX 5HBNA 4Y0BA 1KHYA 1MBUA 3ZRIA 1KSFX 2Y1QA 3WDEA 1QVRA 5GUIA 1R6OA 1LZWB 4UQWA 1R6QA 1K6KA 2K77A 4Y0CA 1R6BX 1MG9B 3PXGA 4IRFA 3FESA 2Y1RA 1MBVA 3FH2A 4HH6A 3WDBA 4IODA 3WDDA 3ZRJA 1MBXA 4P15A
chains in the Genus database with same CATH topology
4HH5A 3WDCA 1R6CX 5HBNA 4Y0BA 1KHYA 1MBUA 3ZRIA 1KSFX 2Y1QA 3WDEA 1QVRA 5GUIA 1R6OA 1LZWB 4UQWA 1R6QA 1K6KA 2K77A 4Y0CA 1R6BX 1MG9B 3PXGA 4IRFA 3FESA 2Y1RA 1MBVA 3FH2A 4HH6A 3WDBA 4IODA 3WDDA 3ZRJA 1MBXA 4P15A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HH5 A;  3WDC A;  1R6C X;  5HBN A;  4Y0B A;  1KHY A;  1MBU A;  3ZRI A;  1KSF X;  2Y1Q A;  3WDE A;  1QVR A;  5GUI A;  1R6O A;  1LZW B;  4UQW A;  1R6Q A;  1K6K A;  2K77 A;  4Y0C A;  1R6B X;  1MG9 B;  3PXG A;  4IRF A;  3FES A;  2Y1R A;  1MBV A;  3FH2 A;  4HH6 A;  3WDB A;  4IOD A;  3WDD A;  3ZRJ A;  1MBX A;  4P15 A; 
#chains in the Genus database with same CATH topology
 4HH5 A;  3WDC A;  1R6C X;  5HBN A;  4Y0B A;  1KHY A;  1MBU A;  3ZRI A;  1KSF X;  2Y1Q A;  3WDE A;  1QVR A;  5GUI A;  1R6O A;  1LZW B;  4UQW A;  1R6Q A;  1K6K A;  2K77 A;  4Y0C A;  1R6B X;  1MG9 B;  3PXG A;  4IRF A;  3FES A;  2Y1R A;  1MBV A;  3FH2 A;  4HH6 A;  3WDB A;  4IOD A;  3WDD A;  3ZRJ A;  1MBX A;  4P15 A; 
#chains in the Genus database with same CATH homology
 4HH5 A;  3WDC A;  1R6C X;  5HBN A;  4Y0B A;  1KHY A;  1MBU A;  3ZRI A;  1KSF X;  2Y1Q A;  3WDE A;  1QVR A;  5GUI A;  1R6O A;  1LZW B;  4UQW A;  1R6Q A;  1K6K A;  2K77 A;  4Y0C A;  1R6B X;  1MG9 B;  3PXG A;  4IRF A;  3FES A;  2Y1R A;  1MBV A;  3FH2 A;  4HH6 A;  3WDB A;  4IOD A;  3WDD A;  3ZRJ A;  1MBX A;  4P15 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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